markuskowa 01f1b41a7d Merge pull request #156381 from r-ryantm/auto-update/bowtie2 ... bowtie2: 2.4.4 -> 2.4.5		2022-01-29 14:56:23 +01:00
..
ants
aragorn
bayescan
bcftools
bedops
bedtools
bftools
blast
bowtie
bowtie2	bowtie2: 2.4.4 -> 2.4.5	2022-01-23 22:45:59 +00:00
bppsuite
bwa
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix
deeptools	deeptools: 3.5.0 -> 3.5.1	2022-01-21 05:36:24 +00:00
delly	delly: 0.8.7 -> 0.9.1	2021-11-25 21:19:48 +11:00
diamond	diamond: switch to fetchFromGitHub	2021-12-23 19:11:17 +01:00
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc
fastp	fastp: 0.23.1 -> 0.23.2	2021-12-02 08:03:17 +11:00
freebayes
genmap	genmap: init 1.3.0	2021-12-04 06:51:16 +11:00
hisat2
hmmer
igv
inormalize
itsx
iv
kallisto
kent
kssd	kssd: switch to fetchFromGitHub	2021-12-23 19:11:17 +01:00
last
MACS2
macse
manta
megahit
meme-suite
messer-slim	messer-slim: 3.6 -> 3.7	2021-12-30 20:32:56 +00:00
migrate
minc-tools
minc-widgets
minia
minimap2	minimap2: 2.23 -> 2.24	2022-01-17 08:49:35 +01:00
mni_autoreg
mosdepth
mrbayes
mrtrix	mrtrix: 3.0.2 -> unstable-2021-11-25	2021-11-30 21:03:53 -08:00
muscle
N3
ncbi-tools
neuron
niftyreg
niftyseg	niftyseg: switch to fetchFromGitHub	2021-12-23 19:11:17 +01:00
obitools
octopus
paml
picard-tools	picard-tools: 2.26.6 -> 2.26.9	2021-12-22 22:20:36 +11:00
platypus
plink-ng
poretools	python,pythonPackages: make aliases	2022-01-16 18:39:59 +00:00
prodigal
quast
raxml
sambamba	sambamba: 0.8.1 -> 0.8.2 (#155972)	2022-01-23 04:51:46 +01:00
samblaster
samtools	samtools: pull upstream fix for ncurses-6.3	2021-11-26 13:02:05 +00:00
seaview	seaview: 5.0.4 -> 5.0.5	2021-12-12 15:59:16 +00:00
snpeff
somatic-sniper
sortmerna
spades
stacks	stacks: 2.59 -> 2.60	2022-01-02 19:23:58 +01:00
star	star: 2.7.9a -> 2.7.10a	2022-01-24 19:51:44 +01:00
strelka
subread	subread: init 2.0.3	2021-12-14 13:30:23 +11:00
sumatools
svaba
tebreak	tebreak: also use python3 for tests	2022-01-16 18:00:59 +00:00
trimal
truvari
varscan
vcftools
whisper
xenomapper	python3Packages.xenomapper: move to top-level	2022-01-01 02:09:11 +01:00