R. RyanTM
7a939f1db3
dcmtk: 3.6.5 -> 3.6.6
2021-01-29 16:43:50 +00:00
github-actions[bot]
c367646dd4
Merge staging-next into staging
2021-01-29 12:23:58 +00:00
Gabriel Ebner
b7fe801cce
Merge pull request #111117 from r-ryantm/auto-update/lean
...
lean: 3.25.0 -> 3.26.0
2021-01-29 11:04:43 +01:00
github-actions[bot]
4c82d7eb24
Merge staging-next into staging
2021-01-29 06:19:21 +00:00
R. RyanTM
fe1239c794
lean: 3.25.0 -> 3.26.0
2021-01-29 05:15:16 +00:00
Sandro
d17f76f05a
Merge pull request #108172 from sikmir/geogebra
...
geogebra: 5-0-609-0 → 5-0-620-0, geogebra6: 6-0-609-0 → 6-0-620-0
2021-01-29 02:19:06 +01:00
github-actions[bot]
798f7b136c
Merge staging-next into staging
2021-01-28 18:30:08 +00:00
Sandro
e368149fcd
Merge pull request #111003 from NieDzejkob/isabelle-vampire
...
isabelle: provide perl LWP for remote_vampire
2021-01-28 18:32:27 +01:00
Jakub Kądziołka
df410f8de7
isabelle: provide perl LWP for remote_vampire
2021-01-28 11:05:39 +01:00
R. RyanTM
abd5395184
mavproxy: 1.8.30 -> 1.8.31
2021-01-28 00:24:12 +00:00
github-actions[bot]
06efb52369
Merge staging-next into staging
2021-01-27 18:28:34 +00:00
Roland Coeurjoly
cbad557fe2
saw-tools: update license ( #110920 )
2021-01-27 17:52:41 +01:00
Ben Siraphob
82454e9df8
treewide: remove implicit use of stdenv.lib
2021-01-27 20:04:57 +07:00
github-actions[bot]
1b5da764a7
Merge staging-next into staging
2021-01-27 12:24:09 +00:00
Sandro
ad97ca4e51
Merge pull request #110912 from siraben/stdenv-lib-inherit
...
treewide: remove inherited stdenv.lib
2021-01-27 10:28:55 +01:00
Ben Siraphob
3bbad8b041
treewide: remove inherited stdenv.lib
2021-01-27 12:44:43 +07:00
Thomas Tuegel
0e418a1a18
Merge pull request #108888 from ttuegel/feature--staging--qt-no-mkDerivation
...
Qt: Do not require mkDerivation
2021-01-26 16:24:41 -06:00
Phillip Cloud
bba47f95f1
sortmerna: mark broken on darwin
2021-01-26 12:55:33 -05:00
Thomas Tuegel
5590e365e4
qtbase: Check for wrapQtAppsHook in setupHook
2021-01-25 15:56:15 -06:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed
2021-01-25 18:31:47 +01:00
Sandro
ad445d3728
Merge pull request #110735 from jbedo/bedtools
...
bedtools: 2.29.2 -> 2.30.0
2021-01-25 11:04:30 +01:00
Ryan Mulligan
afebf1cc9a
Merge pull request #110529 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.24.0 -> 2.24.1
2021-01-24 18:06:28 -08:00
Justin Bedo
d81e79af15
bedtools: 2.29.2 -> 2.30.0
2021-01-25 13:06:22 +11:00
Sandro
a36bf6faf9
Merge pull request #101796 from luc65r/pkg/tilp2
2021-01-25 01:11:50 +01:00
Mario Rodas
214d726b92
Merge pull request #110487 from r-ryantm/auto-update/lean
...
lean: 3.24.0 -> 3.25.0
2021-01-24 10:17:35 -05:00
luc65r
3c5f402e6e
tilp2: init at 1.18
2021-01-24 14:06:41 +01:00
luc65r
99d0610e03
gfm: init at 1.08
2021-01-24 14:06:41 +01:00
volth
bc0d605cf1
treewide: fix double quoted strings in meta.description
...
Signed-off-by: Ben Siraphob <bensiraphob@gmail.com>
2021-01-24 19:56:59 +07:00
Pavol Rusnak
90f7338112
treewide: stdenv.lib -> lib
2021-01-24 01:49:49 +01:00
Markus Kowalewski
6dba41fbcb
mpi: use mpi attribute consistently as the default MPI implementations
...
Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
{
mpi = super.mpich;
}
All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
2021-01-23 12:15:13 +01:00
R. RyanTM
e1ea0a237a
picard-tools: 2.24.0 -> 2.24.1
2021-01-22 19:10:27 +00:00
R. RyanTM
0119128f9e
lean: 3.24.0 -> 3.25.0
2021-01-22 14:11:46 +00:00
sternenseemann
9212e03c13
acgtk: use dune install
2021-01-21 11:26:26 +01:00
Ryan Mulligan
33784b7228
Merge pull request #110086 from r-ryantm/auto-update/marvin
...
marvin: 20.20.0 -> 20.21.0
2021-01-20 23:38:00 -08:00
zowoq
932941b79c
treewide: editorconfig fixes
...
- remove trailing whitespace
- use spaces for indentation
2021-01-21 13:29:54 +10:00
R. RyanTM
427bbe059a
picard-tools: 2.23.9 -> 2.24.0
2021-01-20 20:42:01 +00:00
R. RyanTM
26dba9209f
marvin: 20.20.0 -> 20.21.0
2021-01-20 05:27:37 +00:00
zowoq
759a2cd563
ecopcr: use spaces for indentation
2021-01-20 10:53:10 +10:00
zowoq
31f5dd3f36
treewide: editorconfig fixes
...
- remove trailing whitespace
- use spaces for indentation
2021-01-20 09:11:11 +10:00
R. RyanTM
5eeafdb3ad
kstars: 3.5.0 -> 3.5.1
2021-01-19 18:56:23 +00:00
Jonathan Ringer
9bb3fccb5b
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
...
continuation of #109595
pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.
python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
2021-01-19 01:16:25 -08:00
Jonathan Ringer
200bb8c977
cd-hit: remove non-existent package
2021-01-19 01:16:25 -08:00
Sandro
ed2dbbba22
Merge pull request #109771 from r-ryantm/auto-update/delly
...
delly: 0.8.6 -> 0.8.7
2021-01-18 17:36:01 +01:00
R. RyanTM
e776f923e4
elan: 0.10.2 -> 0.10.3
2021-01-18 15:20:28 +00:00
R. RyanTM
a0e1bb6a4b
delly: 0.8.6 -> 0.8.7
2021-01-18 14:22:30 +00:00
Sandro
0b6f223eec
Merge pull request #104756 from Mazurel/qucs-s
...
qucs-s: init at 0.0.22
2021-01-18 01:30:34 +01:00
Sandro
fe2882e5d3
Merge pull request #107845 from danielbarter/openbabel3
2021-01-18 00:37:32 +01:00
Sandro Jäckel
197eace081
avogadro: update maintainers
2021-01-18 00:21:49 +01:00
Mauricio Scheffer
f8b69fa6d2
starspace: init at unstable-2021-01-17
2021-01-17 21:31:55 +00:00
Ben Siraphob
badf51221d
treewide: stdenv.lib -> lib
2021-01-16 17:58:11 +07:00
yangm2
c7ebdc8123
verilator: 4.100 -> 4.108
...
Co-authored-by: Austin Seipp <aseipp@pobox.com>
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2021-01-15 21:10:37 -06:00
CRTified
f8c06505db
aliza: 1.98.32 -> 1.98.43
2021-01-15 21:30:55 +01:00
Sandro
403ea9f27c
Merge pull request #97101 from fricklerhandwerk/wxpython
2021-01-15 10:30:05 +01:00
Michael Raskin
d714c53f17
fix mis-merge
2021-01-14 15:26:10 +00:00
Michael Raskin
f2210b7287
Merge branch 'master' into remove-opensmt
2021-01-14 14:22:22 +00:00
fricklerhandwerk
bb2879d593
mavproxy: fix darwin build
2021-01-14 09:26:12 +01:00
Sandro Jäckel
55444ed07f
nasc: Fix compilation with gcc10
2021-01-11 12:08:20 +01:00
Profpatsch
4a7f99d55d
treewide: with stdenv.lib; in meta -> with lib;
...
Part of: https://github.com/NixOS/nixpkgs/issues/108938
meta = with stdenv.lib;
is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.
This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.
The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00
Jan Tojnar
dd72357155
Merge branch 'master' into staging-next
2021-01-10 23:24:33 +01:00
John Ericson
05b5b5491e
Merge pull request #108507 from Ericson2314/ott-mode
...
ott-mode: Factor our from ott
2021-01-10 14:30:59 -05:00
Nikolay Korotkiy
c0575fe0ef
geogebra: 5-0-609-0 → 5-0-620-0, geogebra6: 6-0-609-0 → 6-0-620-0
2021-01-10 20:19:43 +03:00
github-actions[bot]
433c7b069c
Merge master into staging-next
2021-01-10 01:03:35 +00:00
Markus Kowalewski
14caa4b2bf
octopus: 10.0 -> 10.3
2021-01-09 16:32:49 +01:00
Markus Kowalewski
0961d5b998
octopus: update licenses
2021-01-09 16:32:49 +01:00
Michael Weiss
8ae8602bf7
Merge branch 'master' into staging-next
...
Manually resolved a conflict in
pkgs/development/libraries/libbladeRF/default.nix.
2021-01-09 12:16:11 +01:00
Cyril Cohen
9ffd16b385
coqPackages: refactor
2021-01-09 11:56:17 +01:00
github-actions[bot]
ecebf82121
Merge master into staging-next
2021-01-08 12:29:36 +00:00
Gabriel Ebner
5000e5707b
Merge pull request #108717 from Dyazz/libqalculate
...
libqalculate: 3.14.0 -> 3.16.0
2021-01-08 11:23:31 +01:00
Dyazz
8cdefb6995
qalculate-gtk: 3.15.0 -> 3.16.0
2021-01-08 08:43:39 +01:00
Jan Tojnar
e6c0c98940
Merge branch 'master' into staging-next
...
zynaddsubfx conflict has been updated to 3.0.1, which conflicted with rewrite after 3.0.5 update on a different branch.
2021-01-08 02:07:34 +01:00
Evils
0448f1c082
kicad-unstable: 2020-12-01 -> 2020-12-23
2021-01-07 16:17:41 -05:00
Evils
9be551c1d8
kicad: 5.1.8 -> 5.1.9
2021-01-07 16:17:41 -05:00
Evils
86e29a0b72
kicad: fix update.sh multiple tag reply handling
...
and fix tabs in update.sh
2021-01-07 16:17:41 -05:00
Sandro
7ae17783a7
Merge pull request #108432 from jbedo/fastp
...
fastp: init 0.20.1
2021-01-07 21:44:33 +01:00
github-actions[bot]
5c072a088d
Merge master into staging-next
2021-01-07 18:40:50 +00:00
Sandro
ec56bf6ede
Merge pull request #106456 from eduardosm/diylc
2021-01-07 17:24:42 +01:00
Jan Tojnar
f19eb635b4
Merge branch 'master' into staging-next
...
b04fc593e7
2021-01-07 13:04:31 +01:00
Eduardo Sánchez Muñoz
0d84b3f540
diylc: init at 4.15.1
2021-01-07 12:53:35 +01:00
Justin Bedo
bdf3d727ca
fastp: init 0.20.1
2021-01-07 18:24:19 +11:00
Devon Richards
7a16349789
lean: 3.23.0 -> 3.24.0
...
We have to update to be able to use the current version of mathlib.
2021-01-06 21:38:04 -06:00
Сухарик
4746e1717f
sympy: 1.6.2 -> 1.7.1 ( #107663 )
...
* sympy: 1.6.2 -> 1.7.1
* sage: adapt tests to sympy 1.7
Co-authored-by: Mauricio Collares <mauricio@collares.org>
2021-01-06 17:10:30 +00:00
Sandro
0af4d59732
Merge pull request #108437 from jbedo/varscan
...
varscan: 2.4.2 -> 2.4.4
2021-01-06 00:19:30 +01:00
Sandro
31d6b1cd06
Merge pull request #108435 from jbedo/last
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last: 1145 -> 1170
2021-01-06 00:18:41 +01:00
Guillaume Girol
f3e84c4d42
Merge pull request #107416 from hjones2199/phd2wrap
...
phd2: add GApps wrapper to fix breakage on non-nixos wayland systems
2021-01-05 20:09:24 +00:00
John Ericson
4eb13669a0
ott: Don't also install emacs mode
...
There is now a separate package for that.
2021-01-05 14:41:52 -05:00
Anderson Torres
0972bbc12d
Merge pull request #108445 from AndersonTorres/updates
...
Misc updates
2021-01-05 11:54:15 -03:00
AndersonTorres
e8183d4687
magic-vlsi: 8.3.80 -> 8.3.109
...
Also, add myself to maintainers list.
2021-01-05 10:49:00 -03:00
Sandro
f53c431645
Merge pull request #108379 from SuperSandro2000/cleanups
2021-01-05 02:19:24 +01:00
Justin Bedo
56dd3fa172
varscan: 2.4.2 -> 2.4.4
2021-01-05 10:55:28 +11:00
Justin Bedo
62432c855f
last: 1145 -> 1170
2021-01-05 10:29:31 +11:00
Frederik Rietdijk
b20838eb4a
Merge staging-next into staging
2021-01-04 20:51:32 +01:00
Pavol Rusnak
bf77245202
Merge pull request #108219 from prusnak/viennarna
...
ViennaRNA: init at 2.4.17
2021-01-04 18:04:56 +01:00
markuskowa
d480c86858
Merge pull request #107223 from markuskowa/upd-qe
...
quantum-espresso: 6.5 -> 6.6
2021-01-04 14:33:37 +01:00
Sandro
6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36
2021-01-04 14:25:21 +01:00
Sandro Jäckel
a8d360eca3
raxml: cleanup
2021-01-04 11:02:16 +01:00
github-actions[bot]
07165c7226
Merge staging-next into staging
2021-01-03 18:38:32 +00:00
John Ericson
b03fdcc7f9
Merge pull request #108300 from siraben/parallel-cmake
...
treewide: remove enableParallelBuilding = true if using cmake
2021-01-03 13:22:09 -05:00
Pavol Rusnak
77364ac7c0
Merge pull request #108251 from prusnak/bowtie2
...
bowtie2: 2.3.5.1 -> 2.4.2
2021-01-03 13:47:45 +01:00
github-actions[bot]
0649757570
Merge staging-next into staging
2021-01-03 12:24:59 +00:00
Ben Siraphob
3ae5e6ce03
treewide: remove enableParallelBuilding = true if using cmake
2021-01-03 18:37:40 +07:00
Sandro
6ae069c990
Merge pull request #108249 from prusnak/bowtie
...
bowtie: init at at 1.3.0
2021-01-03 10:03:24 +01:00
zowoq
fb2311d430
Merge staging-next into staging
2021-01-03 16:33:28 +10:00
Pavol Rusnak
9139eb5aee
bowtie2: 2.3.5.1 -> 2.4.2
2021-01-02 22:18:32 +01:00
Pavol Rusnak
03b99f0721
bowtie: init at at 1.3.0
2021-01-02 19:46:59 +01:00
Maximilian Bosch
097cd34db0
Merge pull request #108126 from Ma27/cleanup-maintained-pkgs
...
treewide: remove maintainership of `ma27` from a few packages
2021-01-02 18:58:26 +01:00
Pavol Rusnak
cb0b77e2f5
ViennaRNA: init at 2.4.17
2021-01-02 18:53:31 +01:00
Sandro
84c3e129cc
Merge pull request #108190 from lopsided98/qgroundcontrol-update
...
qgroundcontrol: 4.0.10 -> 4.0.11
2021-01-02 09:55:16 +01:00
Ben Wolsieffer
92e3304792
qgroundcontrol: 4.0.10 -> 4.0.11
2021-01-01 22:22:20 -05:00
freezeboy
9fd99b5a32
opensmt: 20101017 -> 2.0.1
2021-01-01 23:38:04 +01:00
Sandro
0336dda91b
Merge pull request #108113 from r-ryantm/auto-update/nanovna-saver
...
nanovna-saver: 0.3.7 -> 0.3.8
2021-01-01 21:10:11 +01:00
Maximilian Bosch
e7d1be840c
treewide: remove maintainership of ma27 from a few packages
...
Those are packages I don't use anymore for a longer time and I therefore
don't think that listing me as maintainer is a good idea. If those
should be removed now, I'd be fine with that.
SuperSandro2000 will take care of a few packages[1].
[1] https://github.com/NixOS/nixpkgs/pull/108126#pullrequestreview-560599381
2021-01-01 19:48:01 +01:00
github-actions[bot]
0eb369d907
Merge staging-next into staging
2021-01-01 18:39:12 +00:00
Dmitry Kalinkin
8bee208bf8
Merge pull request #107335 from veprbl/pr/root_6_20_08
...
root: 6.18.04 -> 6.22.06, don't build vendored LLVM
2021-01-01 12:28:37 -05:00
R. RyanTM
43a4341bf7
nanovna-saver: 0.3.7 -> 0.3.8
2021-01-01 10:47:03 +00:00
Ben Siraphob
b04fc593e7
treewide: cmake buildInputs to nativeBuildInputs, minor cleanups
2021-01-01 11:52:33 +07:00
Florian Pester
b740afa546
colmap: 3.5 -> 3.6
2020-12-31 09:56:07 +01:00
Florian Pester
75eef96f08
colmapWithCuda: fix build
2020-12-31 09:56:07 +01:00
Pavol Rusnak
1017eb06b1
Merge pull request #101227 from herberteuler/fix/mathematica-12.1.1-opencv4
...
mathematica: use opencv4
2020-12-29 23:41:09 +01:00
Doron Behar
7c304d037f
Merge pull request #104848 from hjones2199/kstars-up
...
kstars: 3.4.3 -> 3.5.0
2020-12-28 00:16:21 +02:00
Doron Behar
6f8710ae1e
Merge pull request #107545 from wucke13/mission-planner
...
mission-planner: init at version 1.3.74
2020-12-28 00:02:53 +02:00
Hunter Jones
7d42517d83
kstars: 3.4.3 -> 3.5.0
2020-12-27 14:00:39 -06:00
freezeboy
3c89e637e8
bcal: 1.9 -> 2.2
2020-12-27 17:52:28 +01:00
wucke13
54c2534c3b
mission-planner: init at version 1.3.74
2020-12-26 21:39:02 +01:00
Markus Kowalewski
1ba79ed57f
openmolcas: set platform to x86-64-linux
...
This is the main development platforms. Others are not
officially supported.
2020-12-26 16:58:58 +01:00
Markus Kowalewski
c3fadb95f4
openmolcas: fix fallout from #83888
...
Removed non-functional lines.
Openmolcas does not build with the blas/lapack switching mechanism
2020-12-26 01:55:46 +01:00
R. RyanTM
2c3ca45515
mavproxy: 1.8.29 -> 1.8.30
2020-12-24 08:35:40 -08:00
lsix
156b9cc570
Merge pull request #107482 from lsix/gama-2.12
...
gama: 2.09 -> 2.12
2020-12-24 08:22:07 +00:00
Matthias Beyer
fd4a486dea
gama: 2.09 -> 2.12
...
Signed-off-by: Matthias Beyer <mail@beyermatthias.de>
2020-12-23 16:58:32 +00:00
freezeboy
8db56b4525
kstars: add optional dependencies
2020-12-23 17:22:41 +01:00
freezeboy
d63dc152e9
kstars: use mkDerivation instead of wrapQtAppsHook
2020-12-23 17:21:46 +01:00
Hunter Jones
bc28967a18
phd2: add GApps wrapper to fix breakage on non-nixos wayland systems
2020-12-22 12:12:13 -06:00
Dmitry Kalinkin
a30bff21e8
root: use llvm_5 from nixpkgs
2020-12-21 18:24:25 -05:00
Dmitry Kalinkin
b7e70092c5
root: 6.20.08 -> 6.22.06
2020-12-21 16:43:09 -05:00
FliegendeWurst
e49c1a0027
mathematica: 12.1.1 -> 12.2.0 ( #107309 )
2020-12-21 12:55:28 -05:00
Dmitry Kalinkin
7d6e0d5324
root: 6.18.04 -> 6.20.08
2020-12-20 23:49:54 -05:00
Justin Bedo
3a65e29d4b
SPAdes: add python dependency
2020-12-21 08:29:57 +11:00
Markus Kowalewski
7139a58f50
quantum-espresso: 6.5 -> 6.6
2020-12-19 21:14:40 +01:00
Timo Kaufmann
afead527c4
Merge pull request #105615 from collares/sage-update
...
sage: 8.9 -> 9.2
2020-12-19 18:13:16 +01:00
Millian Poquet
15ab96d5a7
simgrid: 3.25 -> 3.26
2020-12-19 14:03:33 +01:00
Vincent Laporte
66c0fc3609
cryptoverif: 2.03pl1 → 2.04
2020-12-18 08:20:10 +01:00
Vincent Laporte
b49a3fb852
cryptoverif: fix search for default library
2020-12-18 08:20:10 +01:00
Vincent Laporte
c5556b7454
coq_8_12: 8.12.1 → 8.12.2
2020-12-16 07:45:54 +01:00
Vincent Laporte
de8205f8bb
coq_8_13: init at 8.13+β1
2020-12-15 21:13:40 +01:00
Mauricio Collares
8100c5a44b
sage: 8.9 -> 9.2 fixups
2020-12-15 16:51:42 -03:00
Mauricio Collares
8b8cae779f
pari: update tarball location, since it moved
2020-12-15 16:46:43 -03:00
Mauricio Collares
4058e45736
nauty: update tarball sha256
...
The old `nauty` tarball is currently accessible at
https://distfiles.macports.org/nauty/nauty27r1.tar.gz . The diff is a
single line in genbg.c:
- SUMMARY(&nout,t2-t1);
+ SUMMARY(nout,t2-t1);
2020-12-15 16:46:43 -03:00
Mauricio Collares
cf6364bed2
pynac: import patch to avoid deprecation warnings on python3.8
2020-12-14 19:24:19 -03:00
Mauricio Collares
5df948d4cc
giac: 1.5.0-21 -> 1.5.0-87
2020-12-14 19:24:18 -03:00
Masanori Ogino
5c4136daf7
sage: 8.9 -> 9.2
2020-12-14 19:24:18 -03:00
Mario Rodas
7666fb25d0
Merge pull request #106856 from jbedo/delly
...
delly: 0.8.5 -> 0.8.6
2020-12-14 08:10:03 -05:00
