mpi: use mpi attribute consistently as the default MPI implementations
Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
{
mpi = super.mpich;
}
All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
This commit is contained in:
Markus Kowalewski
parent
f6a583eeec
commit
6dba41fbcb
27 changed files with 90 additions and 102 deletions
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@ -1,6 +1,6 @@
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{ boost, cmake, fetchFromGitHub, ffmpeg, qtbase, qtx11extras,
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qttools, qtxmlpatterns, qtsvg, gdal, gfortran, libXt, makeWrapper,
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mkDerivation, ninja, openmpi, python3, lib, stdenv, tbb, libGLU, libGL }:
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mkDerivation, ninja, mpi, python3, lib, stdenv, tbb, libGLU, libGL }:
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mkDerivation rec {
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pname = "paraview";
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@ -65,7 +65,7 @@ mkDerivation rec {
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buildInputs = [
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libGLU libGL
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libXt
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openmpi
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mpi
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tbb
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boost
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ffmpeg
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@ -1,4 +1,4 @@
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{ gccStdenv, fetchurl, zlib, openmpi }:
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{ gccStdenv, fetchurl, zlib, mpi }:
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gccStdenv.mkDerivation rec {
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version = "3.7.2";
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@ -9,7 +9,7 @@ gccStdenv.mkDerivation rec {
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sha256 = "1p2364ffjc56i82snzvjpy6pkf6wvqwvlvlqxliscx2c303fxs8v";
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};
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buildInputs = [ zlib openmpi ];
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buildInputs = [ zlib mpi ];
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setSourceRoot = ''sourceRoot=$(echo */src)'';
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buildFlags = [ "thread" "mpis" ];
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preInstall = "mkdir -p $out/man/man1";
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@ -8,7 +8,8 @@
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, readline
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, which
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, python ? null
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, mpi ? null
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, useMpi ? false
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, mpi
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, iv
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}:
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@ -17,7 +18,8 @@ stdenv.mkDerivation rec {
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version = "7.5";
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nativeBuildInputs = [ which pkg-config automake autoconf libtool ];
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buildInputs = [ ncurses readline python mpi iv ];
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buildInputs = [ ncurses readline python iv ]
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++ lib.optional useMpi mpi;
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src = fetchurl {
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url = "https://www.neuron.yale.edu/ftp/neuron/versions/v${version}/nrn-${version}.tar.gz";
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@ -54,7 +56,7 @@ stdenv.mkDerivation rec {
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configureFlags = with lib;
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[ "--with-readline=${readline}" "--with-iv=${iv}" ]
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++ optionals (python != null) [ "--with-nrnpython=${python.interpreter}" ]
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++ (if mpi != null then ["--with-mpi" "--with-paranrn"]
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++ (if useMpi then ["--with-mpi" "--with-paranrn"]
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else ["--without-mpi"]);
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@ -84,4 +86,3 @@ stdenv.mkDerivation rec {
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platforms = platforms.x86_64 ++ platforms.i686;
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};
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}
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@ -1,7 +1,7 @@
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{ lib, stdenv
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, fetchFromGitHub
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, pkgs
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, mpi ? false
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, useMpi ? false
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, mpi
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}:
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stdenv.mkDerivation rec {
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@ -15,16 +15,16 @@ stdenv.mkDerivation rec {
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sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
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};
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buildInputs = lib.optionals mpi [ pkgs.openmpi ];
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buildInputs = lib.optionals useMpi [ mpi ];
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# TODO darwin, AVX and AVX2 makefile targets
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buildPhase = if mpi then ''
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buildPhase = if useMpi then ''
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make -f Makefile.MPI.gcc
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'' else ''
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make -f Makefile.SSE3.PTHREADS.gcc
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'';
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installPhase = if mpi then ''
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installPhase = if useMpi then ''
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mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
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'' else ''
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mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
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@ -1,6 +1,6 @@
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{ lib, stdenv, fetchFromGitLab, cmake, gfortran, perl
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, openblas, hdf5-cpp, python3, texlive
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, armadillo, openmpi, globalarrays, openssh
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, armadillo, mpi, globalarrays, openssh
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, makeWrapper, fetchpatch
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} :
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@ -33,7 +33,7 @@ in stdenv.mkDerivation {
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hdf5-cpp
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python
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armadillo
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openmpi
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mpi
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globalarrays
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openssh
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];
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@ -1,6 +1,7 @@
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{ lib, stdenv, fetchurl
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, gfortran, fftw, blas, lapack
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, mpi ? null
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, useMpi ? false
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, mpi
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}:
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stdenv.mkDerivation rec {
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@ -21,9 +22,9 @@ stdenv.mkDerivation rec {
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'';
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buildInputs = [ fftw blas lapack gfortran ]
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++ (lib.optionals (mpi != null) [ mpi ]);
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++ (lib.optionals useMpi [ mpi ]);
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configureFlags = if (mpi != null) then [ "LD=${mpi}/bin/mpif90" ] else [ "LD=${gfortran}/bin/gfortran" ];
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configureFlags = if useMpi then [ "LD=${mpi}/bin/mpif90" ] else [ "LD=${gfortran}/bin/gfortran" ];
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makeFlags = [ "all" ];
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@ -1,6 +1,7 @@
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{ lib, stdenv, fetchurl
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, gfortran, blas, lapack
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, mpi ? null, scalapack
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, gfortran, blas, lapack, scalapack
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, useMpi ? false
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, mpi
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}:
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stdenv.mkDerivation {
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@ -17,7 +18,7 @@ stdenv.mkDerivation {
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};
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buildInputs = [ blas lapack gfortran ]
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++ (lib.optionals (mpi != null) [ mpi scalapack ]);
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++ lib.optionals useMpi [ mpi scalapack ];
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enableParallelBuilding = true;
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@ -29,7 +30,7 @@ stdenv.mkDerivation {
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cp gfortran.make arch.make
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'';
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preBuild = if (mpi != null) then ''
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preBuild = if useMpi then ''
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makeFlagsArray=(
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CC="mpicc" FC="mpifort"
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FPPFLAGS="-DMPI" MPI_INTERFACE="libmpi_f90.a" MPI_INCLUDE="."
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@ -11,16 +11,15 @@
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, cmake
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, octave
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, gl2ps
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, mpi
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, withQcsxcad ? true
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, withMPI ? false
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, withHyp2mat ? true
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, qcsxcad ? null
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, openmpi ? null
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, hyp2mat ? null
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}:
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assert withQcsxcad -> qcsxcad != null;
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assert withMPI -> openmpi != null;
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assert withHyp2mat -> hyp2mat != null;
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stdenv.mkDerivation {
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@ -50,7 +49,7 @@ stdenv.mkDerivation {
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csxcad
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(octave.override { inherit hdf5; }) ]
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++ lib.optionals withQcsxcad [ qcsxcad ]
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++ lib.optionals withMPI [ openmpi ]
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++ lib.optionals withMPI [ mpi ]
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++ lib.optionals withHyp2mat [ hyp2mat ];
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postFixup = ''
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@ -1,5 +1,5 @@
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{ lib, stdenv, fetchgit, fetchFromGitHub, cmake
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, openblas, blas, lapack, opencv3, libzip, boost, protobuf, openmpi
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, openblas, blas, lapack, opencv3, libzip, boost, protobuf, mpi
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, onebitSGDSupport ? false
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, cudaSupport ? false, addOpenGLRunpath, cudatoolkit, nvidia_x11
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, cudnnSupport ? cudaSupport, cudnn
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@ -33,7 +33,7 @@ in stdenv.mkDerivation rec {
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# Force OpenMPI to use g++ in PATH.
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OMPI_CXX = "g++";
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buildInputs = [ openblas opencv3 libzip boost protobuf openmpi ]
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buildInputs = [ openblas opencv3 libzip boost protobuf mpi ]
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++ lib.optional cudaSupport cudatoolkit
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++ lib.optional cudnnSupport cudnn;
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@ -43,7 +43,7 @@ in stdenv.mkDerivation rec {
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"--with-openblas=${openblas}"
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"--with-boost=${boost.dev}"
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"--with-protobuf=${protobuf}"
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"--with-mpi=${openmpi}"
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"--with-mpi=${mpi}"
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"--cuda=${if cudaSupport then "yes" else "no"}"
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# FIXME
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"--asgd=no"
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@ -1,4 +1,4 @@
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{ lib, stdenv, fetchurl, cmake, gfortran, blas, lapack, openmpi, petsc, python3 }:
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{ lib, stdenv, fetchurl, cmake, gfortran, blas, lapack, mpi, petsc, python3 }:
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stdenv.mkDerivation rec {
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name = "getdp-${version}";
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@ -9,7 +9,7 @@ stdenv.mkDerivation rec {
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};
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nativeBuildInputs = [ cmake gfortran ];
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buildInputs = [ blas lapack openmpi petsc python3 ];
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buildInputs = [ blas lapack mpi petsc python3 ];
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meta = with lib; {
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description = "A General Environment for the Treatment of Discrete Problems";
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@ -1,11 +1,11 @@
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{ lib, stdenv, fetchurl, bison, openmpi, flex, zlib}:
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{ lib, stdenv, fetchurl, bison, mpi, flex, zlib}:
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stdenv.mkDerivation rec {
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version = "6.0.4";
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pname = "scotch";
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src_name = "scotch_${version}";
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buildInputs = [ bison openmpi flex zlib ];
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buildInputs = [ bison mpi flex zlib ];
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src = fetchurl {
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url = "https://gforge.inria.fr/frs/download.php/file/34618/${src_name}.tar.gz";
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@ -3,10 +3,10 @@
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, cmake
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, hwloc
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, fftw
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, openmpi
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, perl
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, singlePrec ? true
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, mpiEnabled ? false
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, mpi
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, cpuAcceleration ? null
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}:
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@ -33,7 +33,7 @@ in stdenv.mkDerivation rec {
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nativeBuildInputs = [ cmake ];
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buildInputs = [ fftw perl hwloc ]
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++ (lib.optionals mpiEnabled [ openmpi ]);
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++ (lib.optionals mpiEnabled [ mpi ]);
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cmakeFlags = [
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"-DGMX_SIMD:STRING=${SIMD cpuAcceleration}"
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@ -1,6 +1,7 @@
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{ lib, stdenv, fetchFromGitHub
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, libpng, gzip, fftw, blas, lapack
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, mpi ? null
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, withMPI ? false
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, mpi
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}:
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let packages = [
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"asphere" "body" "class2" "colloid" "compress" "coreshell"
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@ -8,7 +9,6 @@ let packages = [
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"opt" "peri" "qeq" "replica" "rigid" "shock" "snap" "srd" "user-reaxc"
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];
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lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64";
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withMPI = (mpi != null);
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in
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stdenv.mkDerivation rec {
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# LAMMPS has weird versioning converted to ISO 8601 format
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@ -1,4 +1,4 @@
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{ lib, stdenv, fetchFromGitHub, cmake, git, gfortran, openmpi, blas, liblapack, qt4, qwt6_qt4, pkg-config }:
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{ lib, stdenv, fetchFromGitHub, cmake, git, gfortran, mpi, blas, liblapack, qt4, qwt6_qt4, pkg-config }:
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stdenv.mkDerivation rec {
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pname = "elmerfem";
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@ -14,7 +14,7 @@ stdenv.mkDerivation rec {
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hardeningDisable = [ "format" ];
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nativeBuildInputs = [ cmake pkg-config git ];
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buildInputs = [ gfortran openmpi blas liblapack qt4 qwt6_qt4 ];
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buildInputs = [ gfortran mpi blas liblapack qt4 qwt6_qt4 ];
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preConfigure = ''
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patchShebangs ./
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@ -14,7 +14,8 @@
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, enableNumpy ? false
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, taggedLayout ? ((enableRelease && enableDebug) || (enableSingleThreaded && enableMultiThreaded) || (enableShared && enableStatic))
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, patches ? []
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, mpi ? null
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, useMpi ? false
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, mpi
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, extraB2Args ? []
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# Attributes inherit from specific versions
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@ -94,7 +95,7 @@ let
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++ optional (variant == "release") "debug-symbols=off"
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++ optional (toolset != null) "toolset=${toolset}"
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++ optional (!enablePython) "--without-python"
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++ optional (mpi != null || stdenv.hostPlatform != stdenv.buildPlatform) "--user-config=user-config.jam"
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++ optional (useMpi || stdenv.hostPlatform != stdenv.buildPlatform) "--user-config=user-config.jam"
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++ optionals (stdenv.hostPlatform.libc == "msvcrt") [
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"threadapi=win32"
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] ++ extraB2Args
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@ -140,7 +141,7 @@ stdenv.mkDerivation {
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substituteInPlace tools/build/src/tools/clang-darwin.jam \
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--replace '@rpath/$(<[1]:D=)' "$out/lib/\$(<[1]:D=)";
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fi;
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'' + optionalString (mpi != null) ''
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'' + optionalString useMpi ''
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cat << EOF >> user-config.jam
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using mpi : ${mpi}/bin/mpiCC ;
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EOF
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@ -1,5 +1,5 @@
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{ lib, stdenv, fetchpatch, fetchFromGitHub, autoreconfHook
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, blas, gfortran, openssh, openmpi
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, blas, gfortran, openssh, mpi
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} :
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let
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@ -17,7 +17,7 @@ in stdenv.mkDerivation {
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};
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nativeBuildInputs = [ autoreconfHook ];
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buildInputs = [ openmpi blas gfortran openssh ];
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buildInputs = [ mpi blas gfortran openssh ];
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preConfigure = ''
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configureFlagsArray+=( "--enable-i8" \
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|
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|
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@ -1,4 +1,4 @@
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{ lib, stdenv, fetchFromGitHub, cmake, gcc, boost, eigen, libxml2, openmpi, python3, petsc }:
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{ lib, stdenv, fetchFromGitHub, cmake, gcc, boost, eigen, libxml2, mpi, python3, petsc }:
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stdenv.mkDerivation rec {
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pname = "precice";
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|
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@ -21,7 +21,7 @@ stdenv.mkDerivation rec {
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NIX_CFLAGS_COMPILE = lib.optional stdenv.isDarwin [ "-D_GNU_SOURCE" ];
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nativeBuildInputs = [ cmake gcc ];
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buildInputs = [ boost eigen libxml2 openmpi python3 python3.pkgs.numpy ];
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buildInputs = [ boost eigen libxml2 mpi python3 python3.pkgs.numpy ];
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meta = {
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description = "preCICE stands for Precise Code Interaction Coupling Environment";
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|
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|
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@ -3,7 +3,7 @@
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, pkgs
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, numpy
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, scipy
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, openmpi
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, mpi
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, enum34
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, protobuf
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, pip
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|
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@ -17,8 +17,8 @@ in
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buildPythonPackage {
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inherit (cntk) name version src;
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nativeBuildInputs = [ swig openmpi ];
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buildInputs = [ cntk openmpi ];
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nativeBuildInputs = [ swig mpi ];
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buildInputs = [ cntk mpi ];
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propagatedBuildInputs = [ numpy scipy enum34 protobuf pip ];
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CNTK_LIB_PATH = "${cntk}/lib";
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@ -28,7 +28,7 @@ buildPythonPackage {
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postPatch = ''
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cd bindings/python
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sed -i 's,"libmpi.so.12","${openmpi}/lib/libmpi.so",g' cntk/train/distributed.py
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sed -i 's,"libmpi.so.12","${mpi}/lib/libmpi.so",g' cntk/train/distributed.py
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# Remove distro and libs checks; they aren't compatible with NixOS and besides we guarantee
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# compatibility by providing a package.
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|
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|
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@ -1,7 +1,7 @@
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{ stdenv, lib, fetchFromGitHub, fetchpatch, buildPythonPackage, python,
|
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cudaSupport ? false, cudatoolkit ? null, cudnn ? null, nccl ? null, magma ? null,
|
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mklDnnSupport ? true, useSystemNccl ? true,
|
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openMPISupport ? false, openmpi ? null,
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MPISupport ? false, mpi,
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buildDocs ? false,
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cudaArchList ? null,
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|
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@ -29,8 +29,6 @@
|
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isPy3k, pythonOlder }:
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assert !openMPISupport || openmpi != null;
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# assert that everything needed for cuda is present and that the correct cuda versions are used
|
||||
assert !cudaSupport || cudatoolkit != null;
|
||||
assert cudnn == null || cudatoolkit != null;
|
||||
|
|
@ -38,7 +36,7 @@ assert !cudaSupport || (let majorIs = lib.versions.major cudatoolkit.version;
|
|||
in majorIs == "9" || majorIs == "10" || majorIs == "11");
|
||||
|
||||
# confirm that cudatoolkits are sync'd across dependencies
|
||||
assert !(openMPISupport && cudaSupport) || openmpi.cudatoolkit == cudatoolkit;
|
||||
assert !(MPISupport && cudaSupport) || mpi.cudatoolkit == cudatoolkit;
|
||||
assert !cudaSupport || magma.cudatoolkit == cudatoolkit;
|
||||
|
||||
let
|
||||
|
|
@ -224,7 +222,7 @@ in buildPythonPackage rec {
|
|||
typing-extensions
|
||||
# the following are required for tensorboard support
|
||||
pillow six future tensorflow-tensorboard protobuf
|
||||
] ++ lib.optionals openMPISupport [ openmpi ]
|
||||
] ++ lib.optionals MPISupport [ mpi ]
|
||||
++ lib.optionals (pythonOlder "3.7") [ dataclasses ];
|
||||
|
||||
checkInputs = [ hypothesis ninja psutil ];
|
||||
|
|
|
|||
|
|
@ -11,7 +11,7 @@
|
|||
# Common deps
|
||||
, git, pybind11, which, binutils, glibcLocales, cython, perl
|
||||
# Common libraries
|
||||
, jemalloc, openmpi, gast, grpc, sqlite, boringssl, jsoncpp
|
||||
, jemalloc, mpi, gast, grpc, sqlite, boringssl, jsoncpp
|
||||
, curl, snappy, flatbuffers-core, lmdb-core, icu, double-conversion, libpng, libjpeg_turbo, giflib
|
||||
# Upsteam by default includes cuda support since tensorflow 1.15. We could do
|
||||
# that in nix as well. It would make some things easier and less confusing, but
|
||||
|
|
@ -129,7 +129,7 @@ let
|
|||
|
||||
buildInputs = [
|
||||
jemalloc
|
||||
openmpi
|
||||
mpi
|
||||
glibcLocales
|
||||
git
|
||||
|
||||
|
|
|
|||
|
|
@ -237,7 +237,7 @@ let
|
|||
BayesSAE = [ pkgs.gsl_1 ];
|
||||
BayesVarSel = [ pkgs.gsl_1 ];
|
||||
BayesXsrc = [ pkgs.readline.dev pkgs.ncurses ];
|
||||
bigGP = [ pkgs.openmpi ];
|
||||
bigGP = [ pkgs.mpi ];
|
||||
bio3d = [ pkgs.zlib ];
|
||||
BiocCheck = [ pkgs.which ];
|
||||
Biostrings = [ pkgs.zlib ];
|
||||
|
|
@ -284,8 +284,8 @@ let
|
|||
n1qn1 = [ pkgs.gfortran ];
|
||||
odbc = [ pkgs.unixODBC ];
|
||||
pander = [ pkgs.pandoc pkgs.which ];
|
||||
pbdMPI = [ pkgs.openmpi ];
|
||||
pbdPROF = [ pkgs.openmpi ];
|
||||
pbdMPI = [ pkgs.mpi ];
|
||||
pbdPROF = [ pkgs.mpi ];
|
||||
pbdZMQ = lib.optionals stdenv.isDarwin [ pkgs.which ];
|
||||
pdftools = [ pkgs.poppler.dev ];
|
||||
phytools = [ pkgs.which ];
|
||||
|
|
@ -309,14 +309,14 @@ let
|
|||
RGtk2 = [ pkgs.gtk2.dev ];
|
||||
rhdf5 = [ pkgs.zlib ];
|
||||
Rhdf5lib = [ pkgs.zlib ];
|
||||
Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ];
|
||||
Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.mpi pkgs.pcre.dev ];
|
||||
Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf pkgs.bzip2.dev pkgs.lzma.dev pkgs.curl.dev ];
|
||||
rjags = [ pkgs.jags ];
|
||||
rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ];
|
||||
Rlibeemd = [ pkgs.gsl_1 ];
|
||||
rmatio = [ pkgs.zlib.dev ];
|
||||
Rmpfr = [ pkgs.gmp pkgs.mpfr.dev ];
|
||||
Rmpi = [ pkgs.openmpi ];
|
||||
Rmpi = [ pkgs.mpi ];
|
||||
RMySQL = [ pkgs.zlib pkgs.libmysqlclient pkgs.openssl.dev ];
|
||||
RNetCDF = [ pkgs.netcdf pkgs.udunits ];
|
||||
RODBC = [ pkgs.libiodbc ];
|
||||
|
|
|
|||
|
|
@ -245,7 +245,7 @@ self: super:
|
|||
|
||||
horovod = super.horovod.overridePythonAttrs (
|
||||
old: {
|
||||
propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.openmpi ];
|
||||
propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.mpi ];
|
||||
}
|
||||
);
|
||||
|
||||
|
|
@ -528,14 +528,14 @@ self: super:
|
|||
{ }
|
||||
{
|
||||
mpi = {
|
||||
mpicc = "${pkgs.openmpi.outPath}/bin/mpicc";
|
||||
mpicc = "${pkgs.mpi.outPath}/bin/mpicc";
|
||||
};
|
||||
}
|
||||
);
|
||||
};
|
||||
in
|
||||
{
|
||||
propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.openmpi ];
|
||||
propagatedBuildInputs = old.propagatedBuildInputs ++ [ pkgs.mpi ];
|
||||
enableParallelBuilding = true;
|
||||
preBuild = ''
|
||||
ln -sf ${cfg} mpi.cfg
|
||||
|
|
|
|||
|
|
@ -5,13 +5,14 @@
|
|||
, gfortran ? null
|
||||
, zlib ? null
|
||||
, szip ? null
|
||||
, mpi ? null
|
||||
, mpiSupport ? false
|
||||
, mpi
|
||||
, enableShared ? !stdenv.hostPlatform.isStatic
|
||||
}:
|
||||
|
||||
# cpp and mpi options are mutually exclusive
|
||||
# (--enable-unsupported could be used to force the build)
|
||||
assert !cpp || mpi == null;
|
||||
assert !cpp || !mpiSupport;
|
||||
|
||||
let inherit (lib) optional optionals; in
|
||||
|
||||
|
|
@ -24,7 +25,7 @@ stdenv.mkDerivation rec {
|
|||
};
|
||||
|
||||
passthru = {
|
||||
mpiSupport = (mpi != null);
|
||||
inherit mpiSupport;
|
||||
inherit mpi;
|
||||
};
|
||||
|
||||
|
|
@ -38,13 +39,13 @@ stdenv.mkDerivation rec {
|
|||
|
||||
propagatedBuildInputs = []
|
||||
++ optional (zlib != null) zlib
|
||||
++ optional (mpi != null) mpi;
|
||||
++ optional mpiSupport mpi;
|
||||
|
||||
configureFlags = []
|
||||
++ optional cpp "--enable-cxx"
|
||||
++ optional (gfortran != null) "--enable-fortran"
|
||||
++ optional (szip != null) "--with-szlib=${szip}"
|
||||
++ optionals (mpi != null) ["--enable-parallel" "CC=${mpi}/bin/mpicc"]
|
||||
++ optionals mpiSupport ["--enable-parallel" "CC=${mpi}/bin/mpicc"]
|
||||
++ optional enableShared "--enable-shared";
|
||||
|
||||
patches = [
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
{ lib, stdenv, fetchurl, openmpi } :
|
||||
{ lib, stdenv, fetchurl, mpi } :
|
||||
|
||||
stdenv.mkDerivation rec {
|
||||
pname = "hpcg";
|
||||
|
|
@ -13,7 +13,7 @@ stdenv.mkDerivation rec {
|
|||
|
||||
enableParallelBuilding = true;
|
||||
|
||||
buildInputs = [ openmpi ];
|
||||
buildInputs = [ mpi ];
|
||||
|
||||
makeFlags = [ "arch=Linux_MPI" ];
|
||||
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
{ lib, stdenv, fetchFromGitHub, openmpi, perl, autoreconfHook }:
|
||||
{ lib, stdenv, fetchFromGitHub, mpi, perl, autoreconfHook }:
|
||||
|
||||
stdenv.mkDerivation rec {
|
||||
pname = "ior";
|
||||
|
|
@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
|
|||
};
|
||||
|
||||
nativeBuildInputs = [ autoreconfHook ];
|
||||
buildInputs = [ openmpi perl ];
|
||||
buildInputs = [ mpi perl ];
|
||||
|
||||
enableParallelBuilding = true;
|
||||
|
||||
|
|
|
|||
|
|
@ -4975,12 +4975,11 @@ in
|
|||
hdf5 = callPackage ../tools/misc/hdf5 {
|
||||
gfortran = null;
|
||||
szip = null;
|
||||
mpi = null;
|
||||
};
|
||||
|
||||
hdf5-mpi = appendToName "mpi" (hdf5.override {
|
||||
szip = null;
|
||||
mpi = pkgs.openmpi;
|
||||
mpiSupport = true;
|
||||
});
|
||||
|
||||
hdf5-cpp = appendToName "cpp" (hdf5.override {
|
||||
|
|
@ -7216,6 +7215,8 @@ in
|
|||
|
||||
openmpi = callPackage ../development/libraries/openmpi { };
|
||||
|
||||
mpi = openmpi; # this attribute should used to build MPI applications
|
||||
|
||||
ucx = callPackage ../development/libraries/ucx {};
|
||||
|
||||
openmodelica = callPackage ../applications/science/misc/openmodelica {
|
||||
|
|
@ -22092,9 +22093,7 @@ in
|
|||
|
||||
fractal = callPackage ../applications/networking/instant-messengers/fractal { };
|
||||
|
||||
freecad = libsForQt5.callPackage ../applications/graphics/freecad {
|
||||
mpi = openmpi;
|
||||
};
|
||||
freecad = libsForQt5.callPackage ../applications/graphics/freecad { };
|
||||
|
||||
freemind = callPackage ../applications/misc/freemind {
|
||||
jdk = jdk8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731
|
||||
|
|
@ -22480,7 +22479,7 @@ in
|
|||
|
||||
hpcg = callPackage ../tools/misc/hpcg/default.nix { };
|
||||
|
||||
hpl = callPackage ../tools/misc/hpl { mpi = openmpi; };
|
||||
hpl = callPackage ../tools/misc/hpl { };
|
||||
|
||||
hpmyroom = libsForQt5.callPackage ../applications/networking/hpmyroom { };
|
||||
|
||||
|
|
@ -27254,15 +27253,11 @@ in
|
|||
|
||||
quantum-espresso = callPackage ../applications/science/chemistry/quantum-espresso { };
|
||||
|
||||
quantum-espresso-mpi = callPackage ../applications/science/chemistry/quantum-espresso {
|
||||
mpi = openmpi;
|
||||
};
|
||||
quantum-espresso-mpi = callPackage ../applications/science/chemistry/quantum-espresso { useMpi = true; };
|
||||
|
||||
siesta = callPackage ../applications/science/chemistry/siesta { };
|
||||
|
||||
siesta-mpi = callPackage ../applications/science/chemistry/siesta {
|
||||
mpi = openmpi;
|
||||
};
|
||||
siesta-mpi = callPackage ../applications/science/chemistry/siesta { useMpi = true; };
|
||||
|
||||
### SCIENCE/GEOMETRY
|
||||
|
||||
|
|
@ -27393,7 +27388,7 @@ in
|
|||
};
|
||||
|
||||
neuron-mpi = appendToName "mpi" (neuron.override {
|
||||
mpi = pkgs.openmpi;
|
||||
useMpi = true;
|
||||
});
|
||||
|
||||
neuron-full = neuron-mpi.override { inherit python; };
|
||||
|
|
@ -27445,7 +27440,7 @@ in
|
|||
raxml = callPackage ../applications/science/biology/raxml { };
|
||||
|
||||
raxml-mpi = appendToName "mpi" (raxml.override {
|
||||
mpi = true;
|
||||
useMpi = true;
|
||||
});
|
||||
|
||||
sambamba = callPackage ../applications/science/biology/sambamba { };
|
||||
|
|
@ -27567,9 +27562,7 @@ in
|
|||
|
||||
planarity = callPackage ../development/libraries/science/math/planarity { };
|
||||
|
||||
scalapack = callPackage ../development/libraries/science/math/scalapack {
|
||||
mpi = openmpi;
|
||||
};
|
||||
scalapack = callPackage ../development/libraries/science/math/scalapack { };
|
||||
|
||||
rankwidth = callPackage ../development/libraries/science/math/rankwidth { };
|
||||
|
||||
|
|
@ -27599,9 +27592,7 @@ in
|
|||
|
||||
petsc = callPackage ../development/libraries/science/math/petsc { };
|
||||
|
||||
parmetis = callPackage ../development/libraries/science/math/parmetis {
|
||||
mpi = openmpi;
|
||||
};
|
||||
parmetis = callPackage ../development/libraries/science/math/parmetis { };
|
||||
|
||||
QuadProgpp = callPackage ../development/libraries/science/math/QuadProgpp { };
|
||||
|
||||
|
|
@ -27631,17 +27622,13 @@ in
|
|||
|
||||
### SCIENCE/MOLECULAR-DYNAMICS
|
||||
|
||||
dl-poly-classic-mpi = callPackage ../applications/science/molecular-dynamics/dl-poly-classic {
|
||||
mpi = openmpi;
|
||||
};
|
||||
dl-poly-classic-mpi = callPackage ../applications/science/molecular-dynamics/dl-poly-classic { };
|
||||
|
||||
lammps = callPackage ../applications/science/molecular-dynamics/lammps {
|
||||
fftw = fftw;
|
||||
};
|
||||
|
||||
lammps-mpi = lowPrio (lammps.override {
|
||||
mpi = openmpi;
|
||||
});
|
||||
lammps-mpi = lowPrio (lammps.override { withMPI = true; });
|
||||
|
||||
gromacs = callPackage ../applications/science/molecular-dynamics/gromacs {
|
||||
singlePrec = true;
|
||||
|
|
|
|||
|
|
@ -2184,7 +2184,6 @@ in {
|
|||
|
||||
fenics = callPackage ../development/libraries/science/math/fenics {
|
||||
inherit (pkgs) pkg-config;
|
||||
mpi = pkgs.openmpi;
|
||||
pytest = self.pytest_4;
|
||||
};
|
||||
|
||||
|
|
@ -3486,7 +3485,7 @@ in {
|
|||
|
||||
labelbox = callPackage ../development/python-modules/labelbox { };
|
||||
|
||||
lammps-cython = callPackage ../development/python-modules/lammps-cython { mpi = pkgs.openmpi; };
|
||||
lammps-cython = callPackage ../development/python-modules/lammps-cython { mpi = pkgs.mpi; };
|
||||
|
||||
langcodes = callPackage ../development/python-modules/langcodes { };
|
||||
|
||||
|
|
@ -4120,7 +4119,7 @@ in {
|
|||
|
||||
mpd = callPackage ../development/python-modules/mpd { };
|
||||
|
||||
mpi4py = callPackage ../development/python-modules/mpi4py { mpi = pkgs.openmpi; };
|
||||
mpi4py = callPackage ../development/python-modules/mpi4py { mpi = pkgs.mpi; };
|
||||
|
||||
mplleaflet = callPackage ../development/python-modules/mplleaflet { };
|
||||
|
||||
|
|
|
|||
Loading…
Reference in a new issue