- also create vtk_7 as several packages don't build with 8.x:
- itk5: vtkVersion.h header not found at compile time
- ants: version in tree (2.2.0) is incompatible with 8.2
- itk4: ants depends on both vtk and itk4, so use vtk_7
- gdcm: vtk header issue
- python3Packages.vtk: Python C API compilation error with Python 3.8
- upgrade vtkWithQt4 -> vtkWithQt5
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.
treewide: cleanup from blas/lapack changes
A few issues in the original treewide:
- can’t assume blas64 is a bool
- unused commented code
This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.
Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
In 87a19e9048 I merged staging-next into master using the GitHub gui as intended.
In ac241fb7a5 I merged master into staging-next for the next staging cycle, however, I accidentally pushed it to master.
Thinking this may cause trouble, I reverted it in 0be87c7979. This was however wrong, as it "removed" master.
This reverts commit 0be87c7979.
I merged master into staging-next but accidentally pushed it to master.
This should get us back to 87a19e9048.
This reverts commit ac241fb7a5, reversing
changes made to 76a439239e.
According to https://repology.org/repository/nix_unstable/problems, we have a
lot of packages that have http links that redirect to https as their homepage.
This commit updates all these packages to use the https links as their
homepage.
The following script was used to make these updates:
```
curl https://repology.org/api/v1/repository/nix_unstable/problems \
| jq '.[] | .problem' -r \
| rg 'Homepage link "(.+)" is a permanent redirect to "(.+)" and should be updated' --replace 's@$1@$2@' \
| sort | uniq > script.sed
find -name '*.nix' | xargs -P4 -- sed -f script.sed -i
```
