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Ben Darwin 5e716bf469 vtk: 7.1.1 -> 8.2.0 
- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5
2020-05-11 17:54:29 -04:00
..
ants vtk: 7.1.1 -> 8.2.0 2020-05-11 17:54:29 -04:00
aragorn treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bayescan
bcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bedtools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
blast treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bowtie2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bwa treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
cd-hit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
clustal-omega treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
cmtk treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
conglomerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
dcm2niix dcm2niix: 1.0.20190902 -> 1.0.20200331 2020-05-02 10:16:22 +02:00
deeptools deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
delly
diamond treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
ecopcr treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
eggnog-mapper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
emboss treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
est-sfs treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
exonerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
EZminc ezminc: switch from itk5 to itk4 branch 2020-05-05 00:08:04 -04:00
freebayes treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
hisat2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
hmmer treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
igv treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
inormalize
itsx treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
iv treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
kallisto
kssd
last last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
macse
manta
megahit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
messer-slim treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
migrate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-widgets
minia
minimap2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mni_autoreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mosdepth mosdepth: 0.2.6 -> 0.2.9 2020-04-21 19:42:05 +02:00
mrbayes treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mrtrix mrtrix: 3.0_RC3_latest -> 3.0.0 2020-04-28 10:37:06 -04:00
muscle treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
N3
ncbi-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
neuron treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyseg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
octopus
paml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
picard-tools picard-tools: 2.22.2 -> 2.22.4 2020-05-04 04:07:44 +00:00
platypus treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink-ng treewide: use blas and lapack 2020-04-17 16:24:09 -05:00
poretools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
prodigal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
quast Quast: init at 5.0.2 2020-04-24 10:11:54 +02:00
raxml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
samtools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
seaview seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
snpeff treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
somatic-sniper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sortmerna treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
spades
stacks stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
star
strelka treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sumatools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
svaba
tebreak
trimal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
truvari truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
varscan treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
vcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
xenomapper