nixpkgs-suyu/pkgs/applications/science/biology/octopus/default.nix

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{lib, stdenv, fetchurl, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, xz, pkg-config}:
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stdenv.mkDerivation rec {
pname = "octopus";
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version = "0.7.4";
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src = fetchFromGitHub {
owner = "luntergroup";
repo = "octopus";
rev = "v${version}";
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sha256 = "sha256-FAogksVxUlzMlC0BqRu22Vchj6VX+8yNlHRLyb3g1sE=";
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};
nativeBuildInputs = [ cmake pkg-config ];
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buildInputs = [ boost gmp htslib zlib xz ];
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patches = [ (fetchurl {
url = "https://github.com/luntergroup/octopus/commit/17a597d192bcd5192689bf38c5836a98b824867a.patch";
sha256 = "sha256-VaUr63v7mzhh4VBghH7a7qrqOYwl6vucmmKzTi9yAjY=";
}) ];
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postInstall = ''
mkdir $out/bin
mv $out/octopus $out/bin
'';
meta = with lib; {
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description = "Bayesian haplotype-based mutation calling";
license = licenses.mit;
homepage = "https://github.com/luntergroup/octopus";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.x86_64;
};
}