nixpkgs-suyu/pkgs/applications/science/biology/dcm2niix/default.nix

Ignoring revisions in .git-blame-ignore-revs. Click here to bypass and see the normal blame view.

69 lines
1.8 KiB
Nix
Raw Normal View History

{ lib
, stdenv
2018-01-15 06:19:20 +01:00
, fetchFromGitHub
, substituteAll
2018-01-15 06:19:20 +01:00
, cmake
, openjpeg
, libyamlcpp
, batchVersion ? false
, withJpegLs ? true
, withOpenJpeg ? true
, withCloudflareZlib ? true
2018-01-15 06:19:20 +01:00
}:
let
cloudflareZlib = fetchFromGitHub {
owner = "ningfei";
repo = "zlib";
# HEAD revision of the gcc.amd64 branch on 2022-04-14. Reminder to update
# whenever bumping package version.
rev = "fda61188d1d4dcd21545c34c2a2f5cc9b0f5db4b";
sha256 = "sha256-qySFwY0VI2BQLO2XoCZeYshXEDnHh6SmJ3MvcBUROWU=";
};
in
2018-01-15 07:53:28 +01:00
stdenv.mkDerivation rec {
2021-10-29 11:34:20 +02:00
version = "1.0.20211006";
pname = "dcm2niix";
2018-01-15 06:19:20 +01:00
src = fetchFromGitHub {
owner = "rordenlab";
repo = "dcm2niix";
2018-01-15 07:53:28 +01:00
rev = "v${version}";
2021-10-29 11:34:20 +02:00
sha256 = "sha256-fQAVOzynMdSLDfhcYWcaXkFW/mnv4zySGLVJNE7ql/c=";
2018-01-15 06:19:20 +01:00
};
patches = lib.optionals withCloudflareZlib [
(substituteAll {
src = ./dont-fetch-external-libs.patch;
inherit cloudflareZlib;
})
];
nativeBuildInputs = [ cmake ];
buildInputs = lib.optionals batchVersion [ libyamlcpp ]
++ lib.optionals withOpenJpeg [ openjpeg openjpeg.dev ];
cmakeFlags = lib.optionals batchVersion [
"-DBATCH_VERSION=ON"
"-DYAML-CPP_DIR=${libyamlcpp}/lib/cmake/yaml-cpp"
] ++ lib.optionals withJpegLs [
"-DUSE_JPEGLS=ON"
] ++ lib.optionals withOpenJpeg [
"-DUSE_OPENJPEG=ON"
"-DOpenJPEG_DIR=${openjpeg}/lib/${openjpeg.pname}-${lib.versions.majorMinor openjpeg.version}"
] ++ lib.optionals withCloudflareZlib [
"-DZLIB_IMPLEMENTATION=Cloudflare"
];
2018-01-15 06:19:20 +01:00
meta = with lib; {
description = "DICOM to NIfTI converter";
2018-01-15 06:19:20 +01:00
longDescription = ''
dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format.
2018-01-15 06:19:20 +01:00
'';
homepage = "https://www.nitrc.org/projects/dcm2nii";
2018-01-15 07:53:28 +01:00
license = licenses.bsd3;
maintainers = with maintainers; [ ashgillman rbreslow ];
2018-01-15 07:53:28 +01:00
platforms = platforms.all;
};
2018-01-15 06:19:20 +01:00
}