nixpkgs-suyu/pkgs/applications/science/biology
Robert Scott 3b6bc4b69c treewide: set sourceProvenance for packages containing downloaded jars
these are the easily identifiable cases and will not be comprehensive
2022-06-04 19:47:57 +01:00
..
angsd
ants
aragorn
astral treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
bayescan bayescan: fix the build 2022-05-13 12:00:08 +02:00
bcftools
bedops
bedtools
bftools treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
blast blast: 2.12.0 -> 2.13.0 2022-04-29 09:39:10 -05:00
bowtie bowtie: fix build on case insensitive file systems 2022-05-11 03:20:03 -05:00
bowtie2
bppsuite
bwa bwa: pull upstream fix for -fno-common tollchains 2022-05-08 08:56:43 +01:00
cd-hit
clustal-omega treewide: add meta.mainProgram to many packages 2022-04-14 10:24:01 -07:00
cmtk treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
conglomerate
dcm2niix dcm2niix: support usage of suggested Cloudflare zlib 2022-04-18 15:00:45 -04:00
deeptools
delly
diamond
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc ezminc: mark broken 2022-05-17 10:24:07 -07:00
fastp
febio-studio
flywheel-cli
freebayes freebayes: add -fcommon workaround 2022-05-14 13:19:17 +01:00
genmap
hisat2
hmmer
igv
inormalize
itsx
iv
kallisto
kent
kssd kssd: pull upstream fix for -fno-common tollchains 2022-05-21 11:22:53 +01:00
last
MACS2
macse treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
manta
megahit Static build for megahit 2022-05-04 02:13:31 +02:00
meme-suite
messer-slim
migrate treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
minc-tools
minc-widgets
minia
minimap2
mni_autoreg mni_autoreg: pull upstream workaround for -fno-common toolchains 2022-05-22 14:37:30 +01:00
mosdepth
mrbayes
mrtrix treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
muscle treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
N3
neuron treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
niftyreg
niftyseg
obitools
octopus
paml paml: add -fcommon workaround 2022-05-22 20:23:12 +01:00
picard-tools treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
platypus
plink-ng treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
poretools
prodigal
quast treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
raxml
repseek
sambamba
samblaster
samtools Static build for samtools 2022-05-04 02:16:17 +02:00
seaview
snpeff treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
somatic-sniper
sortmerna
spades
stacks
star
strelka
subread treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
sumatools
svaba Merge pull request #175259 from trofi/workaround-fno-common-for-svaba 2022-06-03 05:59:16 +00:00
tebreak treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
trimal
truvari
varscan treewide: set sourceProvenance for packages containing downloaded jars 2022-06-04 19:47:57 +01:00
vcftools
whisper treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
xenomapper