1303 lines
243 KiB
Nix
1303 lines
243 KiB
Nix
# This file is generated from generate-r-packages.R. DO NOT EDIT.
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# Execute the following command to update the file.
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#
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# Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix
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{ self, derive }:
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let derive2 = derive { rVersion = "3.4"; };
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in with self; {
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ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.4.0"; sha256="1skhxyvyfgld2abiw8cl8wkqrq80jm2pm4p6l297v25cbsjmk3lz"; depends=[ABAData gplots Rcpp]; };
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ABSSeq = derive2 { name="ABSSeq"; version="1.20.4"; sha256="032j430z787j1jrm0c40nn6m33vbjyngiz9ln1jx2z222ybcxrd6"; depends=[limma locfit]; };
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ABarray = derive2 { name="ABarray"; version="1.42.0"; sha256="17vmy7419jdbrkzjll2ck2qvw3wdbba2cdazvji5zrflg9938hmj"; depends=[Biobase multtest]; };
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ACME = derive2 { name="ACME"; version="2.30.0"; sha256="1hhqdnv4dkck47yvp17y3b741d63dxnlhbmkylz5bdab2swffz4m"; depends=[Biobase BiocGenerics]; };
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ADaCGH2 = derive2 { name="ADaCGH2"; version="2.14.0"; sha256="0lvj93gy2x7c6fh2lv8mr17aglk97cmp8s7nwrhysxizbhpzf6mn"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; };
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AGDEX = derive2 { name="AGDEX"; version="1.22.0"; sha256="06zcc8zc5dz310wi1rp75f6015lf97dwaqgqrbxim2akrfrnhyzb"; depends=[Biobase GSEABase]; };
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AIMS = derive2 { name="AIMS"; version="1.6.0"; sha256="1z62cw3f803vl4mymaxaa0vkvrlsmc79idqcq92qw9iznpdl2jam"; depends=[Biobase e1071]; };
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ALDEx2 = derive2 { name="ALDEx2"; version="1.6.0"; sha256="1iiympsbj234nh7pdpgw6wiadj356i925j6in5d14jcqkq12jwpv"; depends=[BiocParallel GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
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AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.0.0"; sha256="0fh7086cdhpp05nwwj6bxwrzi9m6wkzirlb905c3g46afd9wxjrp"; depends=[]; };
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ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.14.0"; sha256="1ikfh4sqzclhva92wz9xhlf835sw9isa6jflnsjwqilg5kivy9bp"; depends=[ARRmData]; };
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ASAFE = derive2 { name="ASAFE"; version="1.0.0"; sha256="0jcjd5gh8j9iwq1b97jw614cz69z2s2fxv1prqkx3alibsf8jr2x"; depends=[]; };
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ASEB = derive2 { name="ASEB"; version="1.18.0"; sha256="09kppm2lhhhd0kfy274xx6p387fxh7rfa3g4ajncnq6bspz8hvia"; depends=[]; };
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ASGSCA = derive2 { name="ASGSCA"; version="1.8.0"; sha256="0w8lwaaj51fh3ibrdcba74x1nfar4m30dz2rii63lk0ah2xb9amy"; depends=[MASS Matrix]; };
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ASSET = derive2 { name="ASSET"; version="1.12.0"; sha256="0vpyi5vpyys597ma8ig18hm1x2f86fwzd35wq5h68glnm3jm3vds"; depends=[MASS msm mvtnorm rmeta tmvnsim]; };
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ASSIGN = derive2 { name="ASSIGN"; version="1.10.0"; sha256="0ks2k8r650j95wd0s7bvxl4d8bgx6dzzb4bpqc68p6bmnx80vkqv"; depends=[gplots msm Rlab]; };
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ASpli = derive2 { name="ASpli"; version="1.0.0"; sha256="0cyq81f2ll9ygvq71p3mlmnvs8pm1582pldz1amlwwwdng7c4v36"; depends=[AnnotationDbi BiocGenerics DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; };
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AffyCompatible = derive2 { name="AffyCompatible"; version="1.34.0"; sha256="1275r14pgj33zq275yp9xqvmxl2nqi2cgylbyjy8i9xvbg4f4sfg"; depends=[Biostrings RCurl XML]; };
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AffyExpress = derive2 { name="AffyExpress"; version="1.40.0"; sha256="0ahj4fm2wdcza4w9m12vvfmzgl2f71xkhwf8mrwm69fp9n1s27lx"; depends=[affy limma]; };
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AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.20.0"; sha256="03rsp23nzvzyswxziwf07x0q5w2f7lhsjpz1biz2pzv64g6xnkwi"; depends=[affy]; };
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AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.24.0"; sha256="0jd78lh02kwxqll5qwnfkwrgfrm5scdc6p703r0vd8gl3cz8wdws"; depends=[affy affycoretools Biobase limma preprocessCore]; };
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AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.12.0"; sha256="0a4bmv7fpd134vdixlwxszlz7lx8xab8122m6p92q6gpla5fb6hk"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
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AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.8.1"; sha256="16x28f7lc5rn73m8l5z3jigkld5yf12pf5hv0mrq9l6fln1i002x"; depends=[Biobase graph log4r rjson]; };
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Anaquin = derive2 { name="Anaquin"; version="1.0.0"; sha256="1fcbxzl4jwcbkgn4v5x4g901fpvlij5hv5n0jfvhxi8wdwqi0xq6"; depends=[ggplot2 knitr locfit plyr qvalue ROCR]; };
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AneuFinder = derive2 { name="AneuFinder"; version="1.2.1"; sha256="1yicsbfj72qbzz03pn1wndmkmsa9i97a78cblhl3vhqgkfff8dx5"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; };
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AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.36.2"; sha256="0574lmyisn3nv9aicz9x3iivx990da4q2j4i0f1jz0mpj9v3vc2w"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
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AnnotationForge = derive2 { name="AnnotationForge"; version="1.16.1"; sha256="0l1g9hy88sh5g567svyfd8pnjvkyklkn6a3gjn8zalvh62qqjjq1"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; };
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AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.24.0"; sha256="1x8rwldmwiri0jk1ypc47bgwdq8nzbbxji9pphgs69g09dijsd0f"; depends=[AnnotationDbi DBI]; };
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AnnotationHub = derive2 { name="AnnotationHub"; version="2.6.5"; sha256="0ff2by5bw5ywxwasiq7z5zc5w7wwwjsvwkj26mjv35zvy7d33kd2"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors yaml]; };
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AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.4.1"; sha256="16v6pqdicjsc9vr4mpjrczffw2dzfkzqp302n0c7m8q2hyw869yl"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings curl DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser Rsamtools RSQLite rtracklayer S4Vectors XML xml2]; };
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ArrayExpress = derive2 { name="ArrayExpress"; version="1.34.0"; sha256="00142sbwbxgwqqhizhjkv5c6jc3575r4s3wwmq4jl6xhlb6nmab6"; depends=[Biobase limma oligo XML]; };
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ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.24.0"; sha256="13y4z76sf05ix9ca0pw058q49y5q1z9yisngwjwkmigcz2bwp6z2"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
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ArrayTV = derive2 { name="ArrayTV"; version="1.12.0"; sha256="10dxj9p02lbh80s17yg3blkx1jha8a962949g733k4p6l25av4jx"; depends=[DNAcopy foreach oligoClasses S4Vectors]; };
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ArrayTools = derive2 { name="ArrayTools"; version="1.34.0"; sha256="02sbknh03k84ylbmmbby8f96dbnwyi2i7hl1p8akf7idg3skinma"; depends=[affy Biobase limma xtable]; };
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AtlasRDF = derive2 { name="AtlasRDF"; version="1.10.0"; sha256="1ar3ggivwc5nx22kyqapv1sb0ra91nq78c989prx5bli3cxfrkxg"; depends=[hash SPARQL]; };
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BAC = derive2 { name="BAC"; version="1.34.0"; sha256="0j7l177nc5c1imib2y1lnnza2b5824rjb10plbpa5knn15kql1l9"; depends=[]; };
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BADER = derive2 { name="BADER"; version="1.12.0"; sha256="0q62cyjqqb5v5cnbn9nm3mlfifz140wk6r27d75dshji4arwc60y"; depends=[]; };
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BAGS = derive2 { name="BAGS"; version="2.14.0"; sha256="0ajjbz3g09qwdl57ab2yhrdvmbw1d0hfcncglpsbf98pb6kda1br"; depends=[Biobase breastCancerVDX]; };
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BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.4.0"; sha256="1q6msd8l3v10swx4cbc71ggihnw9p3pj87v2n5mgdzpc1nngygib"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; };
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BCRANK = derive2 { name="BCRANK"; version="1.36.0"; sha256="0jx6mp6ca4kwpyv341n485hlyzgqayynfrx6vl18dp6f0zkarkym"; depends=[Biostrings]; };
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BEAT = derive2 { name="BEAT"; version="1.12.0"; sha256="03wcm4ga5vsf7iqih7p0sw39ipjaygvhx2x153fnqfhg34a4k67z"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; };
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BEclear = derive2 { name="BEclear"; version="1.6.0"; sha256="1z04ylm5821s7rgrv0bgx5mmy4f09d3a5n4r0mz82lnin7i8swab"; depends=[Matrix snowfall]; };
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BGmix = derive2 { name="BGmix"; version="1.34.0"; sha256="1zkylanfd9m35hswvyykjqz1rb84fhn51q18g32ilpk4yd78aqj2"; depends=[KernSmooth]; };
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BHC = derive2 { name="BHC"; version="1.26.0"; sha256="0xawsqh3drpw14c9a3sacd0rmk93p6gn2yfmqlf91a41sbpj0hpc"; depends=[]; };
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BPRMeth = derive2 { name="BPRMeth"; version="1.0.0"; sha256="0rn4q12bjy5k6g9wkghrxivfzw32qwc6sh4b2b6gaxqsq4rqbnmj"; depends=[assertthat data_table doParallel e1071 earth foreach GenomicRanges IRanges MASS randomForest S4Vectors]; };
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BRAIN = derive2 { name="BRAIN"; version="1.20.0"; sha256="1nj78v1z98mj1n6kyw4fgradn4yqbyd58db15xwlk8d23gs902wq"; depends=[Biostrings lattice PolynomF]; };
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BSgenome = derive2 { name="BSgenome"; version="1.42.0"; sha256="0hxwc02h5mzhkrk60d1jmlsfjf0ai9jxdc0128kj1sg4r2k1q94y"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
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BUS = derive2 { name="BUS"; version="1.30.0"; sha256="144x8zl983vis1k0nba5j2i6pywrczmq2cqdg3bd1w1z9n69643k"; depends=[infotheo minet]; };
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BaalChIP = derive2 { name="BaalChIP"; version="1.0.0"; sha256="0dy3096078gfy9awyagqnbv63ib8bbgh36jf9zvfhilrz9d31xl5"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; };
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BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.2.0"; sha256="09q1bqgz6amraslcdihjz81q7gndn158vp6wpzb1ky9fdd6akd0a"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; };
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BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.18.0"; sha256="03jpwdngyjs18pzkp17fdyy5vq6h0ccqw942a7nd60dsf27mw3pf"; depends=[RCurl RJSONIO]; };
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Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.10.0"; sha256="0cgb4qn3gg7cgp81cblg9qkim729bjvygi7wlxsnsriqfjljsb5s"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; };
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BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.2.0"; sha256="0z7z6gnsczdb4x9277i0fyf5306gkn94j1j2i5aw1j990hrnb619"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; };
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BatchQC = derive2 { name="BatchQC"; version="1.2.1"; sha256="0gdxbn74zrbpgg0y9w0n8mbibh0f320ghgyw32ya1agc8maqkfzm"; depends=[corpcor d3heatmap ggvis gplots knitr limma matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; };
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BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.0.0"; sha256="07zmkihvakhqxc6v6hh95d3wkg32vrvag1fbx9qxfmqnnicsrnin"; depends=[Biobase]; };
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BayesPeak = derive2 { name="BayesPeak"; version="1.26.0"; sha256="1hk31ic0r7zbvfz04h1ginkkhzbz85wdlsmym1aqbiz4x53j97wj"; depends=[IRanges]; };
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BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.26.0"; sha256="0ms2wa4h81j4q6bwak217q8nkrkmj5zjm33i3gkifbzav2s1k5vf"; depends=[]; };
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BgeeDB = derive2 { name="BgeeDB"; version="2.0.0"; sha256="11az0sqnjrpfw3pnf0aqgz4kqd8gd1976s9zfyl10gyrfj7h9n49"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; };
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BiGGR = derive2 { name="BiGGR"; version="1.10.0"; sha256="1h2ilx761cy3f4vd52kz4vyq74khln5jiwhllg3w4vs4kczvs32k"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; };
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BiRewire = derive2 { name="BiRewire"; version="3.6.0"; sha256="138q86h188nnwb4f0q1xw07n0v44cgmfzh5j9xvbkcp522lj0n92"; depends=[igraph Matrix slam tsne]; };
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BiSeq = derive2 { name="BiSeq"; version="1.14.0"; sha256="1bdgg8mb269hipp0n8bphdgrslzmc8ykcdx848vcgppgfb0dab7a"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
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BicARE = derive2 { name="BicARE"; version="1.32.0"; sha256="0mkdb2ijr8lb1j08nzd3vwr63vjlpfs739fwk5ay586a99n4qi0z"; depends=[Biobase GSEABase multtest]; };
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BioMVCClass = derive2 { name="BioMVCClass"; version="1.42.0"; sha256="1zd7s997dyhl85b99nzqy5a2ljdz7gh55l02y3qadgbfazfrfbfl"; depends=[Biobase graph MVCClass Rgraphviz]; };
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BioNet = derive2 { name="BioNet"; version="1.34.0"; sha256="1vjnlr7gasklb9dshz580bc8z8rkd98093rf0049vqf4z7d65m3j"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
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BioQC = derive2 { name="BioQC"; version="1.2.0"; sha256="0cjh945vjcgn8lxi3gd13m96vrp01pz96mjn0apcp7xbf2rcfmmx"; depends=[Biobase Rcpp]; };
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BioSeqClass = derive2 { name="BioSeqClass"; version="1.32.0"; sha256="1m0arhpckd2g48mwfm56av4fkgs6mcmwygxyci0jfh9hl78mp155"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; };
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Biobase = derive2 { name="Biobase"; version="2.34.0"; sha256="0js9j9wqls8f571ifl9ylllbb9a9hwf7b7drf2grwb1fl31ldazl"; depends=[BiocGenerics]; };
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BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.36.0"; sha256="1qgf7hii9zhw8awqs7j89k35y34w45xb9k4sa8csd76h3y7av3q0"; depends=[Biobase]; };
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BiocCheck = derive2 { name="BiocCheck"; version="1.10.1"; sha256="197kpiycyl3qawm6801fxyxj81d2g57a00qxaqprapsf1d140l52"; depends=[BiocInstaller biocViews codetools graph httr optparse]; };
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BiocGenerics = derive2 { name="BiocGenerics"; version="0.20.0"; sha256="06szdz7dfs1iyv5zdl4fjzad18nnf1zf3wvglc6c6yd9mrqlf7vk"; depends=[]; };
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BiocInstaller = derive2 { name="BiocInstaller"; version="1.24.0"; sha256="0y1y5wmy6lzjqx3hdg15n91d417ccjj8dbvdkhmp99bs5aijwcpn"; depends=[]; };
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BiocParallel = derive2 { name="BiocParallel"; version="1.8.2"; sha256="18zpa0vl375n9pvxsgbid1k96m17nqqgv1g1sfnlmm7kj34jxg6v"; depends=[futile_logger snow]; };
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BiocStyle = derive2 { name="BiocStyle"; version="2.2.1"; sha256="0sl99xw940ixrm6v24lgaw3ljh56g59a6rdz7g160hx84z9f8n2n"; depends=[]; };
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BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.0.0"; sha256="0asia6f2ff80g8a2w0fckkqhcydkj4ry67c7wlxsz0xzllp14gxl"; depends=[httr knitr rmarkdown stringr]; };
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Biostrings = derive2 { name="Biostrings"; version="2.42.1"; sha256="0vqgd9i6y3wj4zviqwgvwgd4qj6033fg01rmx1cw9bw5i8ans42d"; depends=[BiocGenerics IRanges S4Vectors XVector]; };
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BitSeq = derive2 { name="BitSeq"; version="1.18.0"; sha256="0kv2kk1flm6vbs7s2d6kya1jg8hajrxdg5ndihrsybaas5fby8mb"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
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BrainStars = derive2 { name="BrainStars"; version="1.18.0"; sha256="0q0jx30baf2hnz4mplqj6jhl7mj5hncgb00cj1d6yijv9c9iiay7"; depends=[Biobase RCurl RJSONIO]; };
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BridgeDbR = derive2 { name="BridgeDbR"; version="1.8.0"; sha256="049a5bdjxp30jc5zgswk0bsyfvri58g4zrbkw258kwgsmk44l6f4"; depends=[RCurl rJava]; };
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BrowserViz = derive2 { name="BrowserViz"; version="1.6.0"; sha256="06a7sg26b0lwla9vzq9vnggvbhnnw5xh07r7yr258d5030nabpy3"; depends=[BiocGenerics httpuv jsonlite]; };
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BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.6.0"; sha256="0v1l13i6xf8605xrmgfj0pi0r4w15jpzvz4inhpnm66rn0qv2r5q"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; };
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BubbleTree = derive2 { name="BubbleTree"; version="2.4.0"; sha256="16sy8yfbjr1shbd63g9354mzxsisqp4d9nfi6hxhj5c2r35x6bga"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr rainbow RColorBrewer WriteXLS]; };
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BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.38.0"; sha256="04l2dqnf2akq4fhy63sywnmrcddz0r7da3gbd2zgp9fyn6m5ayv0"; depends=[]; };
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BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.38.0"; sha256="0m7pwiyrk482g73aknmhpp09vc4yb5s3jb8bp3y9d494hdy7mijl"; depends=[BufferedMatrix]; };
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CAFE = derive2 { name="CAFE"; version="1.10.0"; sha256="0gw5c94fr1kzckai6bgyc5dkgizqir3k8zcc6mdpl5d07hwahsip"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
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CAGEr = derive2 { name="CAGEr"; version="1.16.0"; sha256="1bbbj2bqc2xd5akmgi30w0h0rfn1n5sv626dz916alhjzhiqx52m"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; };
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CALIB = derive2 { name="CALIB"; version="1.40.0"; sha256="0r0dz6vg3sx4bxajh6c8gc12wgnaahnz3yah82jsws1wzplqhkvi"; depends=[limma]; };
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CAMERA = derive2 { name="CAMERA"; version="1.30.0"; sha256="074ln7d0f5gqsk9cxsckmklbx8grzh9kqjlf8zcz6j7ypnzkhy57"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
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CAnD = derive2 { name="CAnD"; version="1.6.0"; sha256="14nq061i69hk8yrkiq35lk7nk58klpl7lmkjzfdd8789h87218b2"; depends=[ggplot2 reshape]; };
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CCPROMISE = derive2 { name="CCPROMISE"; version="1.0.0"; sha256="0cx58i42dypx6sqyrmbf4gw2c2213cgjbijkq2fxf9ah8fm4ss3p"; depends=[Biobase CCP GSEABase PROMISE]; };
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CFAssay = derive2 { name="CFAssay"; version="1.8.0"; sha256="0p91q4z8kip0pqn45kspczhffv9f6mwn1p07q2bwl5fdcbs2xp5p"; depends=[]; };
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CGEN = derive2 { name="CGEN"; version="3.10.0"; sha256="189bhjzgcag4n216h0jnq994y439nd052yalx7ll5q7nazhw5j8w"; depends=[mvtnorm survival]; };
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CGHbase = derive2 { name="CGHbase"; version="1.34.0"; sha256="1pb1paby9n9map71jk971qfpni2m23hcwrssqqjb7byjc9flnmf5"; depends=[Biobase marray]; };
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CGHcall = derive2 { name="CGHcall"; version="2.36.0"; sha256="0wnyslj7yn0yc57q60w2y644lmvvvih6rzm55rrad34lz2h39bsz"; depends=[Biobase CGHbase DNAcopy impute snowfall]; };
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CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.28.0"; sha256="1bv8vivl9b0c1dp7ka9dh3gvk1z4zpcirifh7yq0p9g9yr22k0vb"; depends=[Biobase CGHbase CGHcall]; };
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CGHregions = derive2 { name="CGHregions"; version="1.32.0"; sha256="1cc2vz6k5lasvzj2dh8xm26j7zvvwwx8791pqhz6q2fisxq5vz1c"; depends=[Biobase CGHbase]; };
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CHRONOS = derive2 { name="CHRONOS"; version="1.2.1"; sha256="0hzj01dw4xwivy0ikyh55i2zkf61g03m6rm6xfdhc7a49y6fzxpr"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; };
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CINdex = derive2 { name="CINdex"; version="1.2.0"; sha256="096qiz86rxfhcrjs0pf3mp5zqgi3j7i4agbw53ym5kwzg486y2r2"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; };
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CMA = derive2 { name="CMA"; version="1.32.0"; sha256="0706k4xjakyid6mkca6z6r24kbsnkvw7qzzadqkm45sy11z0w5l8"; depends=[Biobase]; };
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CNAnorm = derive2 { name="CNAnorm"; version="1.20.0"; sha256="0dja320m9yiaj0kp9gmygpbqffnjdpi476wwcs2gwd6yixsldl6b"; depends=[DNAcopy]; };
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CNEr = derive2 { name="CNEr"; version="1.10.2"; sha256="12z2iza0mgw9yrpnlv7447mcsxn8h183712q66f1j4a779mhn5ii"; depends=[annotate BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; };
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CNORdt = derive2 { name="CNORdt"; version="1.16.0"; sha256="086ynj0nb6799qxgj7zys9gzxf4lvhacsqxr2qzl2hw4y13gxxkp"; depends=[abind CellNOptR]; };
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CNORfeeder = derive2 { name="CNORfeeder"; version="1.14.0"; sha256="19x8xxra4n5ys8wjqwj49qs3lg5jq9y00c36avr7cckxi9kyqqhc"; depends=[CellNOptR graph]; };
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CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.16.0"; sha256="03k246x3yi0c3bw8h0642767p6zbgx8d0ahvnv29lcrb7wp9qsi3"; depends=[CellNOptR nloptr]; };
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CNORode = derive2 { name="CNORode"; version="1.16.0"; sha256="1zsnig3r8yqa06nfxbd8czxjk72h5z7h0vd85cqkb181bwagl0r3"; depends=[CellNOptR genalg]; };
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CNPBayes = derive2 { name="CNPBayes"; version="1.4.0"; sha256="1ly0mh6k7x443i25g0j716aflc5q2rld0fqnyr86k1x06rh0ky8q"; depends=[BiocGenerics coda combinat GenomeInfoDb GenomicRanges gtools IRanges matrixStats RColorBrewer Rcpp S4Vectors SummarizedExperiment]; };
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CNTools = derive2 { name="CNTools"; version="1.30.0"; sha256="0wcny74g377741as9dw87n4vf6yi8yvxhxbf87x0y4zkf88aimcz"; depends=[genefilter]; };
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CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.4.0"; sha256="00xgwf62cs9l6pnvbp33b442q1mgaibac5fw4n2qsypdfb2p1xn3"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq openxlsx plyr Rsamtools S4Vectors]; };
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CNVrd2 = derive2 { name="CNVrd2"; version="1.12.0"; sha256="1msjvq3200y637ybh2yb5g1c2z0aqk1bwjvrndrg36vlg7342b6y"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
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CNVtools = derive2 { name="CNVtools"; version="1.68.0"; sha256="1lx2jhwfwya2hm8v9dkqkjhfbfp008k2k75r63wpph8yfxhyvvmz"; depends=[survival]; };
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CODEX = derive2 { name="CODEX"; version="1.6.0"; sha256="077cbv8n6mr8ksapxj2b837ms68kyzgjlk499c69q3dji456bgfw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; };
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COHCAP = derive2 { name="COHCAP"; version="1.16.0"; sha256="14smbyviii5ghac3rhkrz87vhx6nxgv3n54k3rrzsdbrw8n0i773"; depends=[COHCAPanno gplots RColorBrewer WriteXLS]; };
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COMPASS = derive2 { name="COMPASS"; version="1.12.0"; sha256="1cmqqcsv32ixdmm9qybvafjca6lqzc652hp4jn9vy62ffb81r8i8"; depends=[abind clue data_table knitr pdist plyr RColorBrewer Rcpp scales]; };
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CONFESS = derive2 { name="CONFESS"; version="1.2.2"; sha256="1zw3sl5vzn6j8qppz39s2l11f9n2p5yzr4b17qgar6p41f83xffa"; depends=[changepoint cluster contrast EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; };
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CORREP = derive2 { name="CORREP"; version="1.40.0"; sha256="1wd8qq11xdyis0acnzlml10m0z8fazzhmvxxqa21h2wpq0yz9m19"; depends=[e1071]; };
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COSNet = derive2 { name="COSNet"; version="1.8.0"; sha256="07s72x0dbsnq340v1akl4jp8m63nnxck2nvivz12cvbq8hbhz6hf"; depends=[]; };
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CRISPRseek = derive2 { name="CRISPRseek"; version="1.14.1"; sha256="0l3blmszil8zr03wg9pwl59lkyxbn1pa3pz967nlbwffcv2lqfa0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; };
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CRImage = derive2 { name="CRImage"; version="1.22.0"; sha256="0km82x446b1r9b27z1cx65nd9lm8ppxkarzqwqs426hj59wpzxhf"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
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CSAR = derive2 { name="CSAR"; version="1.26.0"; sha256="15w6mmwd5pqb144x3dyhi6x2ni00n0ak94lfrw317rajq733zr0p"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
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CSSP = derive2 { name="CSSP"; version="1.12.0"; sha256="03gpl3w7iw79gcni4xchvbkrsp7v6i8zy6aqws54za4wimwqvsnf"; depends=[]; };
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CVE = derive2 { name="CVE"; version="1.0.0"; sha256="0xmy5mdw43db9d8pd3k6d73005hba72df24fsmgp9dv5sy9rg6p2"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny WGCNA]; };
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CancerInSilico = derive2 { name="CancerInSilico"; version="1.0.0"; sha256="17jmyrcgs698g74hxp9mif7g4s175qdrfy5h1zz72fwcssmblh74"; depends=[BH Rcpp testthat]; };
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CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.16.0"; sha256="1wzbrlw5zf0pmm5m41wqf73wlsidb11l7l9llrmidbg860j0jjs0"; depends=[AnnotationDbi limma qvalue]; };
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CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.0.0"; sha256="1vja80lj16icp6jblw62b24daj7izgk9wbhbwprlbgcjvkppxfik"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; };
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Cardinal = derive2 { name="Cardinal"; version="1.6.0"; sha256="1fwni0dwn1syz5j0961fpmnmifqb20hd23ysazfi3xvdq7pf1lw7"; depends=[Biobase BiocGenerics irlba lattice ProtGenerics signal sp]; };
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Category = derive2 { name="Category"; version="2.40.0"; sha256="16ncwz7b4y48k0p3fvbrbmvf7nfz63li9ysgcl8kp9kl4hg7llng"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter graph GSEABase Matrix RBGL RSQLite]; };
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CausalR = derive2 { name="CausalR"; version="1.6.0"; sha256="0l0021qslqj0xvrkg1lpmfnwdvi03yc7y2k62iz83s7k77z0wj6c"; depends=[igraph]; };
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CellMapper = derive2 { name="CellMapper"; version="1.0.0"; sha256="1ixii9ppg7jhwvazzzjy3dq01x35yc3k81j698988dfrdls0plcv"; depends=[S4Vectors]; };
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CellNOptR = derive2 { name="CellNOptR"; version="1.20.0"; sha256="1awz7k09rx03f8dq5g9mmnlizpx6232vvc03ycah3r1wwzgfzlhd"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
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CexoR = derive2 { name="CexoR"; version="1.12.0"; sha256="110c7p0y3l7b491bvr78n5z8f4gmfgfjndbd8pnhn0k7abb9bvs9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
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ChAMP = derive2 { name="ChAMP"; version="2.6.4"; sha256="1f8ngnzp6yq4x746vid72ind2bi7l1wdfnipyj2wn0gsh2jpxa7c"; depends=[bumphunter ChAMPdata dendextend DMRcate DNAcopy doParallel FEM GenomicRanges goseq Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICmanifest impute isva limma marray matrixStats minfi plotly plyr preprocessCore quadprog qvalue RColorBrewer RefFreeEWAS RPMM shiny shinythemes sva wateRmelon]; };
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ChIPComp = derive2 { name="ChIPComp"; version="1.4.0"; sha256="0wr9qrw9mnjl28fw764vhjb2shif6fl3z0hbwkhrfiz1974rdw0v"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; };
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ChIPQC = derive2 { name="ChIPQC"; version="1.10.3"; sha256="1nabghyndp4bky6msb4k6gcxpgysz7rir545d5afrfi4gbk1rpfi"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; };
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ChIPXpress = derive2 { name="ChIPXpress"; version="1.16.0"; sha256="19lx482jhh4h97nic57lk198a0x1xc51cnx79l9h6r9r86ncxl0w"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; };
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ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.8.9"; sha256="1wykx52xqnz9pcxgfzf5i0ckrw41jg0piwynx1v1ldjxajbdh904"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; };
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ChIPseeker = derive2 { name="ChIPseeker"; version="1.10.3"; sha256="00bv8i44c33ak2v6wzzk7s963wdhzb3c03ch2v8bkmnnb99sk0za"; depends=[AnnotationDbi BiocGenerics boot DOSE dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; };
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ChIPseqR = derive2 { name="ChIPseqR"; version="1.28.0"; sha256="0bv5anp4p220vh53khaqggwclp34k2402mfcj28wv9cfl7xhw4g3"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
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ChIPsim = derive2 { name="ChIPsim"; version="1.28.0"; sha256="06f00mviqxgqqli6lkybryl81hvf1ica94sj1zjc9bzm1aiva2fv"; depends=[Biostrings IRanges ShortRead XVector]; };
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ChemmineOB = derive2 { name="ChemmineOB"; version="1.12.0"; sha256="1f5wx3259v5whwy9h8jw7gs52n65gdby8q0lq1z9md0846i8cx6p"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
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ChemmineR = derive2 { name="ChemmineR"; version="2.26.1"; sha256="1i3cdszdb4k0cj3sl1p2fll7vxk47w2fldjzwb3b24qab0xczyih"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; };
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Chicago = derive2 { name="Chicago"; version="1.2.0"; sha256="1bxb35azi6sdlw0rl043h50cs20ysgmmydlscl5nn96ajk5ahs74"; depends=[data_table Delaporte Hmisc MASS matrixStats]; };
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ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.28.0"; sha256="034cianqg08rkqi2gpw29q144hnnnjb8jrmw180lfsdqbms8hlq3"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; };
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ClassifyR = derive2 { name="ClassifyR"; version="1.8.2"; sha256="0mn5hmlyhln7yngqvq8k6ir63jhf71b1h6s3322pppbypq25njsz"; depends=[Biobase BiocParallel locfit ROCR]; };
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Clomial = derive2 { name="Clomial"; version="1.10.0"; sha256="0nabq2nng5hc1rpqhr8riav0gjckzhhfr6i35ff5dxb4md3bgsxm"; depends=[matrixStats permute]; };
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Clonality = derive2 { name="Clonality"; version="1.22.0"; sha256="0qi62476ix6vm0zr7n3zvh6msl8w3lcnk8bn8c7qvynkn82ky4j4"; depends=[DNAcopy]; };
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ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.2.3"; sha256="169mi6xr5jslwgs9vyx0g90n2vp3za6v0hih714bamkk4vsjpzrv"; depends=[pracma princurve RColorBrewer scatterplot3d]; };
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CoCiteStats = derive2 { name="CoCiteStats"; version="1.46.0"; sha256="0jsgcgrr8nnw8mngxcvijri94k6aq2r8svzbrif22m1v7cpddhll"; depends=[AnnotationDbi org_Hs_eg_db]; };
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CoGAPS = derive2 { name="CoGAPS"; version="2.8.0"; sha256="1mbnyim02l1k77r2lchz7k42x9hpj1yvcq4qspyf2rh9d9p03zg6"; depends=[BH gplots RColorBrewer Rcpp]; };
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CoRegNet = derive2 { name="CoRegNet"; version="1.10.0"; sha256="1gh9nkgxm4b583rf33g4qziz989725l42nnfyrjasjcgwb996scz"; depends=[arules igraph shiny]; };
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CompGO = derive2 { name="CompGO"; version="1.10.0"; sha256="1walrgh7bczfzms8syi2vcmjzq1xigxl2jld9v9i7v139h4yvp6d"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; };
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ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.12.0"; sha256="0r5d75lj0fbskizpmhbv0w4wscpfjfq9k3vbadyfs8wadmp9xvdh"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; };
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ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.38.0"; sha256="0lw8j9gvm227yjh0ya05j4x87a9p6s95cr7sraza0zh6qc70vgzb"; depends=[ALL Biobase cluster]; };
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CopywriteR = derive2 { name="CopywriteR"; version="2.6.0"; sha256="1bwwnsyk7cpgwkagsnn5mv6fv233b0rkhjvbadrh70h8m4anawfj"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
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CorMut = derive2 { name="CorMut"; version="1.16.0"; sha256="0c0wx7nldq0wsa5z6l398jnnpkxjkqj9yc490x15kyds9pyazm85"; depends=[igraph seqinr]; };
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Cormotif = derive2 { name="Cormotif"; version="1.20.0"; sha256="0wh5wj3z5q2yk9jw5wmd2adpwhl0vck19flzdwns55bfndz7s5xd"; depends=[affy limma]; };
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CountClust = derive2 { name="CountClust"; version="1.2.0"; sha256="14frvr84dxfp4ily2x40gr7phh8d39ljxnlkz0224cc7v2lnkjz7"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam]; };
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CoverageView = derive2 { name="CoverageView"; version="1.10.0"; sha256="1sfhir56rra207z8pl8px40qrc5hca8kf4zmrl2pk9zr7ksbd1z5"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
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CrispRVariants = derive2 { name="CrispRVariants"; version="1.2.0"; sha256="0dvzyz3rxwd5blfcaf05viy35w7n8681wzb2lr5zdc44nm92d3kz"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; };
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CytoML = derive2 { name="CytoML"; version="1.0.1"; sha256="034ki5bi83m04c9l2m636vb5l1wj0nmvyphj1db7bhz8i0h8as7w"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace graph jsonlite ncdfFlow openCyto RBGL Rgraphviz XML]; };
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DAPAR = derive2 { name="DAPAR"; version="1.6.0"; sha256="0v176my80p7p26azczw75yqi9zdfvxjf35hjr5hprhm795bppavx"; depends=[Cairo cp4p doParallel foreach ggplot2 gplots impute imputeLCMD knitr lattice limma Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer reshape2 scales tmvtnorm vioplot]; };
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DART = derive2 { name="DART"; version="1.22.0"; sha256="0ysi99wlhb6v98nfqd6vss0c14sh87p0v13099dll18ijifvfkqr"; depends=[igraph]; };
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DBChIP = derive2 { name="DBChIP"; version="1.18.0"; sha256="00jwf6163dbrglbq1fba3380ad7wxd8swj2xcm650m41i2nf2rqz"; depends=[DESeq edgeR]; };
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DChIPRep = derive2 { name="DChIPRep"; version="1.4.0"; sha256="0l31w5xs2g9bdyy191gpslp41m9k42pq5lzd86vpm1xw0792q9w0"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; };
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DECIPHER = derive2 { name="DECIPHER"; version="2.2.0"; sha256="07i9dgw4hck0jgxsj80sc68wf1d7d7zqxy8vbpf1ynf3m1zwkynp"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
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DEDS = derive2 { name="DEDS"; version="1.48.0"; sha256="18bb887dhifdkcp0bgg4dfcx3nlwxnrakh0r000i856m5fn79zd5"; depends=[]; };
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DEFormats = derive2 { name="DEFormats"; version="1.2.0"; sha256="047cvxbzs0mg14y9005f40xjgj1pgik43jb3q5z1inipqgmj1sn4"; depends=[checkmate DESeq2 edgeR GenomicRanges SummarizedExperiment]; };
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DEGraph = derive2 { name="DEGraph"; version="1.26.0"; sha256="1s7gjraaqvndr590wbnvjq4wik6bmbdijl6l0ribd5d7r5zic0gm"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
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DEGreport = derive2 { name="DEGreport"; version="1.10.1"; sha256="0llhniqryz3fckgmkc89h89ipc7ambi323y2awwyqc080d7ph37p"; depends=[cluster coda dplyr edgeR ggplot2 gridExtra knitr logging Nozzle_R1 pheatmap quantreg reshape tidyr]; };
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DEGseq = derive2 { name="DEGseq"; version="1.28.0"; sha256="0p9m0bky2fa320nw22bfa270zj91aywmyp0vs67x3x4aimhirz7g"; depends=[qvalue samr]; };
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DESeq = derive2 { name="DESeq"; version="1.26.0"; sha256="18f0400pcmla88kc2prscw0skkf7bww0mnkrj6hhxyy79dhzdy86"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
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DESeq2 = derive2 { name="DESeq2"; version="1.14.1"; sha256="1walwkqryn1gnwz7zryr5764a0p6ia7ag4w6w9n8fskg8dkg0fqs"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
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DEXSeq = derive2 { name="DEXSeq"; version="1.20.2"; sha256="1j3ll3417smxx1akbi3kk1r2p0m8jfrgfd35rhmr3q8b3lz3x9pw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; };
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DEsubs = derive2 { name="DEsubs"; version="1.0.2"; sha256="0v35x38sh6i69m7wjwzyyjhcx88wrrz3gr5w1r80cg5rvjl8bhch"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL samr]; };
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DFP = derive2 { name="DFP"; version="1.32.0"; sha256="08jjhzqr4yv2zwdgn43r3bvh2hw0fsamicyzdwcfkamvw9p5ipxf"; depends=[Biobase]; };
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DMRcaller = derive2 { name="DMRcaller"; version="1.6.0"; sha256="196km32s5z881hsranycsmmqk1nxr3vdfhwdy9l1j179b64vz09w"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
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DMRcate = derive2 { name="DMRcate"; version="1.10.10"; sha256="1snsq6j1na9z78mks43fhgz2iayizm4vd51kx4m8zikc198h3xw1"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; };
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DMRforPairs = derive2 { name="DMRforPairs"; version="1.10.0"; sha256="0flr8a8bzhwcs4hhrcb8ilzr1pzlgic4d5nm8gsqnrgjdjh05np7"; depends=[GenomicRanges Gviz R2HTML]; };
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DNABarcodes = derive2 { name="DNABarcodes"; version="1.4.0"; sha256="13xc3abfm2yg7s1h0way99vcj3577p3j183jhqq4ii86c6y9c6k7"; depends=[BH Matrix Rcpp]; };
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DNAcopy = derive2 { name="DNAcopy"; version="1.48.0"; sha256="1idyvfvy7xx8k9vk00y4k3819qmip8iqm809j3vpxabmsn7r9zyh"; depends=[]; };
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DNAshapeR = derive2 { name="DNAshapeR"; version="1.2.0"; sha256="0zm1c989h34iqk0w9sgz7bdz3h0njns856yhc1q7n6vfqnhhygsz"; depends=[Biostrings fields GenomicRanges Rcpp]; };
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DOQTL = derive2 { name="DOQTL"; version="1.10.0"; sha256="0fn444vc1w274079a3yn79rnv6i1nhqp9jwyg0qkih53bg49519x"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; };
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DOSE = derive2 { name="DOSE"; version="3.0.10"; sha256="13m5akx9hi11906sbrbcz8q36m9h8i0wqm5323bdnlprv217m8fq"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim igraph qvalue reshape2 S4Vectors scales]; };
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DRIMSeq = derive2 { name="DRIMSeq"; version="1.2.0"; sha256="1iiqb3ccxh9y2sc913sw7lcd16bq54kj6z5hk6f7khsgwy84g5q6"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges reshape2 S4Vectors]; };
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DSS = derive2 { name="DSS"; version="2.14.0"; sha256="09452x6cs16b2fxx7h74midxkla7cc46paqkxhilx82nf2yrjzrm"; depends=[Biobase bsseq]; };
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DTA = derive2 { name="DTA"; version="2.20.0"; sha256="16bp4gy8ifc3ag24d6npfzvwhv4by371qilqsxnmd677pq75ccx6"; depends=[LSD scatterplot3d]; };
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DeMAND = derive2 { name="DeMAND"; version="1.4.0"; sha256="03w9vcv8ji82hhyy70mh5smib565gzjdp4bl7i1h1y3wjmsrq760"; depends=[KernSmooth]; };
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|
DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.16.0"; sha256="0p8vg1b8arpv01cdgq37c0mfmkd824b47cd8cpdzf7nhrhq53w65"; depends=[ggplot2 limSolve pcaMethods]; };
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|
DeepBlueR = derive2 { name="DeepBlueR"; version="1.0.11"; sha256="1zqr0bdsf4xlkdqrpg1ihc287gppw56p9p9smy97npm2dnqygw6f"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; };
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|
DiffBind = derive2 { name="DiffBind"; version="2.2.12"; sha256="0w3dwhjkf0sc7bd3m13gwym03j3pyli3xy2y7dqsqn8mhm64bqcy"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; };
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DiffLogo = derive2 { name="DiffLogo"; version="1.4.0"; sha256="1pla3izw79il49vlrp21shyq13xvg6vbayrjs6kbhjih738x0i5j"; depends=[cba]; };
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|
Director = derive2 { name="Director"; version="1.0.0"; sha256="0g0z2pp4jk9a3sfcidq8abgwnki8za73wzvpm4xdzy5g6lrcf3y7"; depends=[htmltools]; };
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|
DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.16.0"; sha256="0jrjragn40qjbrm7amg066jbl1ypxzs3h5cbd7vv35iwwvzgmgr3"; depends=[BiocGenerics IRanges S4Vectors]; };
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DriverNet = derive2 { name="DriverNet"; version="1.14.0"; sha256="19n396565sngzc3pk2dibqsza9pmp8dm1nrhlipv663r46s6j6kz"; depends=[]; };
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DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.14.0"; sha256="0pbaa9dg8g0bwky2mjr3wjpavf82xd564c1wx813ivsdx8a69pnm"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; };
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DupChecker = derive2 { name="DupChecker"; version="1.12.0"; sha256="0yrlx3w8ndij5ynfyjh0y5xyldsnsyhgw7ilnx728vfxp7zgw6fv"; depends=[R_utils RCurl]; };
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|
DynDoc = derive2 { name="DynDoc"; version="1.52.0"; sha256="0nd7873m3zgyx1ryyhy9bsvzzkvdvqggk5sbnai4aph2hy2lbk1a"; depends=[]; };
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EBImage = derive2 { name="EBImage"; version="4.16.0"; sha256="0gbl9waszvkavw68npsjq1c7yhqljgb2r0qx4f8i05cp8i0yr3rx"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
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|
EBSEA = derive2 { name="EBSEA"; version="1.2.0"; sha256="1ikkj4mmr1rdcxsy1anc3ik3vy1hn0v262h17751y64bk2djvycj"; depends=[edgeR gtools limma]; };
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|
EBSeq = derive2 { name="EBSeq"; version="1.14.0"; sha256="14ny417fijjnrkz5hjj8z8s6dbrqxx0cyi85585g06nrv8mm1hhl"; depends=[blockmodeling gplots testthat]; };
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|
EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.8.0"; sha256="0ahmsxqixapdjpwsr1wnmk7lq5fnbqpq7vsbs9qk2a5pl2lxzqd0"; depends=[EBSeq]; };
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|
EBarrays = derive2 { name="EBarrays"; version="2.38.0"; sha256="1r00rdd5zlm29jc0yq3jns08cv67f9wk6lia56m52zscqcji6nvw"; depends=[Biobase cluster lattice]; };
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|
EBcoexpress = derive2 { name="EBcoexpress"; version="1.18.0"; sha256="0lhcvd49rhmcdbmxizivcn7wi9bv0av2p9mz4grpnb3a0r6hjgdm"; depends=[EBarrays mclust minqa]; };
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EDASeq = derive2 { name="EDASeq"; version="2.8.0"; sha256="0biwxx1ssqj3isc15i7crm05cyapm47ny4jks8wr9pqha715myai"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
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EDDA = derive2 { name="EDDA"; version="1.12.0"; sha256="1ra5jdngpiif9wd322ncg72ik2wkapcn7z3raw6rb5ii8g5706fc"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
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EGAD = derive2 { name="EGAD"; version="1.2.0"; sha256="04zaykhl3dkaqy73dsgj0kqghisxgck2fjbwrvlc9j8rb2rggnmd"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; };
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|
EGSEA = derive2 { name="EGSEA"; version="1.2.0"; sha256="0wd4a89l8isbgqcyls8pw5h1l68qd4k1c7nxci7q4d86vrv3xzwd"; depends=[AnnotationDbi Biobase edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview RColorBrewer safe stringi topGO]; };
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ELBOW = derive2 { name="ELBOW"; version="1.10.0"; sha256="0x86czjfzpkxs9z6fn6siapwj6320f096bzg3bfjzaa387g89sk0"; depends=[]; };
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ELMER = derive2 { name="ELMER"; version="1.4.1"; sha256="1q60yi3wqjmm2y6dfl5qjgxzhdjd22vsdsnan8mw1fl2kljjlbdl"; depends=[BiocGenerics ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi reshape S4Vectors]; };
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EMDomics = derive2 { name="EMDomics"; version="2.4.0"; sha256="0fkyvmib34kwz4zzp3f0miw9bhn87hmbk0j94gla2fgxvxwby1sf"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; };
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ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.0.6"; sha256="0876lfyh5584nq6sqz3yyc4ixl1pfyx1wamhdfcyq6c86yi5prgp"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; };
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ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.22.0"; sha256="1h3nz1k2rl2b14hh61yqq3dng3h3k3qp48w8izfsdwjm9imxs3kb"; depends=[rJava XML]; };
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ENmix = derive2 { name="ENmix"; version="1.10.0"; sha256="17ppsfbl68fsck4nyda4x8k5sdymn52dgkvky1q4cri3xvn2kkpj"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
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EWCE = derive2 { name="EWCE"; version="1.2.0"; sha256="1iq62cn389sa0h3y6rj61n51a1wkjcpnq9a3la2gavddd0iqsbl8"; depends=[biomaRt ggplot2 reshape2]; };
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EasyqpcR = derive2 { name="EasyqpcR"; version="1.16.0"; sha256="1hlhvpz18q6wfwmfj0fs8saacpyaild2p7qwmgmndcv2lqpmgcrh"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
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|
EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.2.0"; sha256="0l7dq2ww2vi39iipazfv71i0bw6j029x3llbnd15sf7lpsplc9df"; depends=[]; };
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|
EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.4.0"; sha256="013y7iygzf7vy1g34c2ww55m4w1173mxbwi4pn6x75r1fmnmvkai"; depends=[ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats]; };
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EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.4.6"; sha256="1xijwplmlcdi2rqp8frsbwgxby6k2mnjbfv2dw560rgcmys7n395"; depends=[AnnotationDbi Biobase biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; };
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ExiMiR = derive2 { name="ExiMiR"; version="2.16.0"; sha256="11pr3jlzm8hm4bizpgwvmr1ylb41rd487mp71890paqwhv91abq1"; depends=[affy affyio Biobase limma preprocessCore]; };
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ExperimentHub = derive2 { name="ExperimentHub"; version="1.0.0"; sha256="15254v73vi7vr7cky29i58np5ljq7iawmffrb1vir54snpgw72q9"; depends=[AnnotationHub BiocGenerics BiocInstaller S4Vectors]; };
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ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.0.0"; sha256="1i55z69idxk3zpiypid045mssvfbysbincxfp0z8sh5gf0dipj9d"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocInstaller curl DBI ExperimentHub httr S4Vectors]; };
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ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.2.0"; sha256="07asxjzplx05jkxm05lxny4np9yw0i9ir0pbhg76dxnx7k1x1bv4"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; };
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ExpressionView = derive2 { name="ExpressionView"; version="1.26.0"; sha256="0fy2cay5s9ypbrdjj6v5n8l99pq0fggw6gl9xh451vr2j0c8cmr8"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; };
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|
FEM = derive2 { name="FEM"; version="3.2.0"; sha256="1ivhzap6hcdwpy8yf1sl4gh53c24nzm22br08z8g99wl3q3apsg0"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; };
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FGNet = derive2 { name="FGNet"; version="3.8.0"; sha256="07v32575vws879745zc1c75rlwbdrybijhbc3hs7s4w4nz574lfc"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
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FISHalyseR = derive2 { name="FISHalyseR"; version="1.8.0"; sha256="0fn92g2zzv35xhd28p5zb3qqhqy9hflz4d1sk3cjajpav26k9dnd"; depends=[abind EBImage]; };
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|
FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.10.0"; sha256="0ccp7s4qg2mf0mnz9hvasscgc18nmqmjrfwj9k2x1nv6rhph51cv"; depends=[fda MASS]; };
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FamAgg = derive2 { name="FamAgg"; version="1.2.1"; sha256="16iaj8zn12kq89sksq5dqgfxyb5048vdfhvjqgvp455vi74jkx9z"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; };
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|
FindMyFriends = derive2 { name="FindMyFriends"; version="1.4.0"; sha256="1r2jqrsgsmrlz3fa8qp7pb4bxh6am2xmgafnk5xh679kyvdhp4dh"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; };
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FitHiC = derive2 { name="FitHiC"; version="1.0.0"; sha256="1pzywxdn2qkkfkhnf1n4d9fnvz3kz4301kxqmszj3d10z2wlhzab"; depends=[data_table fdrtool Rcpp]; };
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|
FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.6.0"; sha256="06z3wandk8vaabkbmm0w6jaknimysfm16r351alg28ajznxqiw1n"; depends=[jsonlite RCurl XML]; };
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FlowSOM = derive2 { name="FlowSOM"; version="1.6.0"; sha256="1lbyxhs59cc3mfqbgskgnx5vbly6rr2dswn3hwlw5nh2idpwnwfn"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; };
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FourCSeq = derive2 { name="FourCSeq"; version="1.8.0"; sha256="0n0zsmh48vy756wg3rmnsqsl0kyy8wl1sm97c0w1yp4wpak36qqp"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
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FunChIP = derive2 { name="FunChIP"; version="1.0.0"; sha256="1l0hyg3scp0b1xsx7xl8x6629iaf155k50vykjk17kb6aand5p19"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges Rcpp Rsamtools shiny]; };
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FunciSNP = derive2 { name="FunciSNP"; version="1.18.0"; sha256="03wzrrdhnp6svf4vy907h6bbnpfgrbqhqabsah37qzld15qm2xs2"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
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GAprediction = derive2 { name="GAprediction"; version="1.0.0"; sha256="18675g9405x4bhbgk1y3lc011cz409qgqgmnsr9pg1cr1cpfcgqh"; depends=[glmnet Matrix]; };
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GEM = derive2 { name="GEM"; version="1.0.0"; sha256="12y8pnbvfmid0spid61nxlf79nnq64yd1q6as7mi95nqgf498lcb"; depends=[ggplot2]; };
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GENE_E = derive2 { name="GENE.E"; version="1.14.0"; sha256="07qc96cja92zbs87qmrpxl6jym96vazygybmjvkxzb3cmw8ivcrg"; depends=[RCurl rhdf5]; };
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GENESIS = derive2 { name="GENESIS"; version="2.4.0"; sha256="1gknm10fjgry5arz60y6yvkdpiwf1nkvyyxdgh2jbslz6ypgcy57"; depends=[Biobase gdsfmt graph GWASTools SeqArray SeqVarTools]; };
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GEOmetadb = derive2 { name="GEOmetadb"; version="1.34.0"; sha256="0gjzhx3x1945ny8wqp1w6gwgbx81wsqbgc9l7sd2wqnf85w5y513"; depends=[GEOquery RSQLite]; };
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GEOquery = derive2 { name="GEOquery"; version="2.40.0"; sha256="1p4dsmbibhrjdffkh8z1fff4j85jczwn4djnnpj2ifvz2x05q3vc"; depends=[Biobase httr RCurl XML]; };
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GEOsearch = derive2 { name="GEOsearch"; version="1.0.0"; sha256="1xz3mizjh1nfmc4726jjj38qdn5byjwlinwbd3j0k2qw5dvzmjaj"; depends=[org_Hs_eg_db org_Mm_eg_db RCurl]; };
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GEOsubmission = derive2 { name="GEOsubmission"; version="1.26.1"; sha256="0niagqjl5sqi4frjj23glgib0js1gf7p7lj4qbz8lvkg1arj2kba"; depends=[affy Biobase]; };
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GEWIST = derive2 { name="GEWIST"; version="1.18.0"; sha256="1faw43mvv3v9yl9lbllx0gj588i7r9rfm453mwq80v9adllrnnkw"; depends=[car]; };
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GGBase = derive2 { name="GGBase"; version="3.36.0"; sha256="1wmxv6wl6d050xjc0sc0z2i74y3xnnr6vmdynipcncbsrmsw91gv"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
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GGtools = derive2 { name="GGtools"; version="5.10.1"; sha256="1cngmdk9ggp38gbp3kqs74ixa5ak5cm1n09z1lrhg110byim79ry"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
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GLAD = derive2 { name="GLAD"; version="2.38.0"; sha256="1din6jgb2n6qs6g10133mc506y3bmc2gpwdcj6q8fm3jwq3iw769"; depends=[]; };
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GMRP = derive2 { name="GMRP"; version="1.2.0"; sha256="17n77baq513wxnh0dh313h7bpj01jkfs4ybac1w5bmsqbafnakz8"; depends=[diagram GenomicRanges plotrix]; };
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GOFunction = derive2 { name="GOFunction"; version="1.22.0"; sha256="1gn9z2si5jg7db28ldmgj03b0acv9mq884srmgjyq3ar705hkvd9"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; };
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GOSemSim = derive2 { name="GOSemSim"; version="2.0.4"; sha256="1ii12y5yb6mby76c193ampvjk0klsx3kl0h6qmr3359sdx9mcbiq"; depends=[AnnotationDbi GO_db Rcpp]; };
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GOSim = derive2 { name="GOSim"; version="1.12.0"; sha256="0539da5ljil1l158bdrj7xmgj7da33kwqk8ng5snwv9jzvmynrdn"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; };
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GOTHiC = derive2 { name="GOTHiC"; version="1.10.0"; sha256="17n51iw61xyfiladvrz36ksvj6sdfgmhbxs9hx25g3j5biv0sxw0"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; };
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GOexpress = derive2 { name="GOexpress"; version="1.8.1"; sha256="00gnznvyg2mpk6cv5jk842h71awikw3qbzg43vl72cxcb8iai7fj"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr VennDiagram]; };
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GOpro = derive2 { name="GOpro"; version="1.0.0"; sha256="0wypc72p940b2jh8s83k4hs5m4flvpr724xgzscygcn3v25b23c7"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; };
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GOstats = derive2 { name="GOstats"; version="2.40.0"; sha256="0g2czm94zhzx92z7y2r4mjfxhwml7bhab2db6820ks8nkw1zvr9n"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL]; };
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GOsummaries = derive2 { name="GOsummaries"; version="2.8.0"; sha256="05aws7ln6jxisgmxkx3m3lfz87i8ayy8bdm8lgjyhhskf5gq7yzn"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
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GRENITS = derive2 { name="GRENITS"; version="1.26.0"; sha256="1x1rxs3id7kbp7lf3a8460qh6p0mlhx1w33yyy20cd45y407xxji"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
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GRmetrics = derive2 { name="GRmetrics"; version="1.0.0"; sha256="0pviyq23gsivqxm9pzxa5d911f32m3p8gkav9hbsn2fm2x7g8k07"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; };
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GSALightning = derive2 { name="GSALightning"; version="1.2.0"; sha256="0hxjlnzwk16s1qxnd1dsd8f9zbwqnpq7vyrr3ag6yq4xm6rksr9v"; depends=[data_table Matrix]; };
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GSAR = derive2 { name="GSAR"; version="1.8.0"; sha256="0wdz3jx1dnw6w71r3spfi09nqyndvb0f610qci50s824k593aglp"; depends=[igraph]; };
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GSCA = derive2 { name="GSCA"; version="2.4.0"; sha256="1fxc3s891flai43j8i7bp9q3v6ynkbd4yx6y5rgvf8360bl62s3z"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
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GSEABase = derive2 { name="GSEABase"; version="1.36.0"; sha256="0l2x7yj7lfb0m2dmsav5ib026dikpgl4crdckrnj776yy08lgxpj"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
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GSEAlm = derive2 { name="GSEAlm"; version="1.34.0"; sha256="0ykxpki36spgb562805k5hi2cyp984gjr2flq591vc8qhz87d1ry"; depends=[Biobase]; };
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GSRI = derive2 { name="GSRI"; version="2.22.0"; sha256="1dml01y75yc2f3ra65ha4ah991mvlzdnhkzllqxlah0gayvbhw52"; depends=[Biobase fdrtool genefilter GSEABase les]; };
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GSReg = derive2 { name="GSReg"; version="1.8.0"; sha256="0ccghcpdpaa3dfaxbg682jll7gj6yh6513adffyi7q9qif6rz4jx"; depends=[]; };
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GSVA = derive2 { name="GSVA"; version="1.22.4"; sha256="1v0znan5xyd1b3cr83ag83sk5ipnifn3882qcnfz6d26b5rq5cdz"; depends=[Biobase BiocGenerics GSEABase]; };
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GUIDEseq = derive2 { name="GUIDEseq"; version="1.4.1"; sha256="0n21pd96q9xj6ljamq40zld0276dj4raiwdak8l27y37n1xq5bna"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; };
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GWASTools = derive2 { name="GWASTools"; version="1.20.0"; sha256="07ql1iihqvmks7pzlwab6hffsp7d6by8n7sq9mgi5zqwdy1kdyw3"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf4 quantsmooth RSQLite sandwich survival]; };
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GenRank = derive2 { name="GenRank"; version="1.2.0"; sha256="1sp43mr40dnfmxavqrn3bhbwkvrx229q7kvbwv4xbzl9980y2mwq"; depends=[matrixStats reshape2 survcomp]; };
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GenVisR = derive2 { name="GenVisR"; version="1.4.1"; sha256="0a4nnq7nkmza8kyx6jq321rzfh843cj9yjn36pqam2w3gkx4a5q2"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI FField GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales viridis]; };
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GeneAnswers = derive2 { name="GeneAnswers"; version="2.16.0"; sha256="164vas8gkrs1q9s3vhnb1f1lkqlndd5n2v7q0hb0rndjg0b08ryb"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
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GeneBreak = derive2 { name="GeneBreak"; version="1.4.0"; sha256="153a1ca44apavrf09fc8gwyvqbln6rwjpcjq6cxa2ixw714xvmk1"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; };
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GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.20.0"; sha256="0v26wyibllqw1mwncb4h8m3bg0x8zm9iv6apadp7n91x0zaqflmd"; depends=[Biobase PGSEA]; };
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GeneGA = derive2 { name="GeneGA"; version="1.24.0"; sha256="19jr504whini0csk8cir3rs8fwccnrpf84kpnhphsc6j7ypy45qd"; depends=[hash seqinr]; };
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GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.0.0"; sha256="15i67aqjvss9g8irh6ifr000y37irxg2glpg9qajm9kpwjvsr8kf"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; };
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GeneMeta = derive2 { name="GeneMeta"; version="1.46.0"; sha256="1zxn1wm8wzia561hgljdyp1djidr1bzzb5kxpb73jwpxb43j8pd5"; depends=[Biobase genefilter]; };
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GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.16.0"; sha256="0mkd7ny0h0j53daxz7zwcbgnk85rmkpbsj0p4l205g3nfwa06iip"; depends=[graph plyr Rcpp]; };
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GeneOverlap = derive2 { name="GeneOverlap"; version="1.10.0"; sha256="1y8n4r2gps65sz1yhhzr1n0frv79vwm2j9vxvs75v6c3a236x4r0"; depends=[gplots RColorBrewer]; };
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GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.30.0"; sha256="0ac6qqzlnl29hkxyxyn6rvffg8klfp9qps0bx9hgmmhj60iwzqdi"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; };
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GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.18.0"; sha256="04asjxn49vipaidammf568gf4gfck6d0300hdydxkpbzm8frpn0n"; depends=[Biobase limma MASS survival]; };
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GeneSelector = derive2 { name="GeneSelector"; version="2.24.0"; sha256="1d99hqmp5jrwaq08svzvliqfli9r4731gmj3d9ly6rqaiba003zf"; depends=[Biobase limma multtest samr siggenes]; };
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GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.42.0"; sha256="0mx55dqrib9ik0nvh96l5nz80hslz7ihi2lri98nlfanm1ckmgjn"; depends=[gmodels gtools mvtnorm]; };
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GeneticsPed = derive2 { name="GeneticsPed"; version="1.36.0"; sha256="0z4zqni9sncigi89c2vvw7pian2zlni9rhbc9l39ig2970zyvh7s"; depends=[gdata genetics MASS]; };
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GenoGAM = derive2 { name="GenoGAM"; version="1.2.1"; sha256="04r18wff2zjkb0hh731ssl7jplb8kn4lrmls0zzfl6iqgh539vvf"; depends=[BiocParallel Biostrings data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; };
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GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.34.0"; sha256="0088s233lj2p0vy5wdw049zgakppvzk1zf07k628yaz8ckbgjg99"; depends=[biomaRt]; };
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GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.10.3"; sha256="18g24cf6b3vi13w85ki2mam6i2gl4yxr1zchyga34xc3dkdngzrw"; depends=[BiocGenerics IRanges RCurl S4Vectors]; };
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GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.10.1"; sha256="1dilghbsyf64iz5c0kib2c7if72x7almd5w3ali09a2b2ff2mcjk"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
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GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.26.4"; sha256="1y16lqach0v3ym5zhdhj4r2imfi0kpa0djlb51hj85yf7xkzwdlb"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; };
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GenomicFiles = derive2 { name="GenomicFiles"; version="1.10.3"; sha256="03yqkl2yjdz999j1y7azcs16vg0vydrqs6sxcfkgn11fiwi6i3l2"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
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GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.8.1"; sha256="1lqwyz6ms6iw8sl2l52xbaaag10lp3k8s03c9326hxhyy3ba7c5f"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; };
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GenomicRanges = derive2 { name="GenomicRanges"; version="1.26.4"; sha256="1789ycqzv20d8p1axkxrhsz9v0ww6w1dk2mfvm85p8j53zd1f67c"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
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GenomicTuples = derive2 { name="GenomicTuples"; version="1.8.3"; sha256="1wxcz06gywipyv0cnw8w7f9wccbn90l0h07zspwfd0l0d4rmqh1p"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
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Genominator = derive2 { name="Genominator"; version="1.28.0"; sha256="0aayjr0sw9xqy4y2xyfbmbk7cbc81c5f0kf6fhdiswxl1v5f43l4"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
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Glimma = derive2 { name="Glimma"; version="1.2.1"; sha256="0gqkm41rsdkgq15b3w2hv3n77kp85sirnypdav7g3lq00r8q69iv"; depends=[DESeq2 edgeR]; };
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GlobalAncova = derive2 { name="GlobalAncova"; version="3.42.0"; sha256="0wxs7l4jx4c54bafvif48c4rlnv5vgl658403j4gp6w2xapbi4dv"; depends=[annotate AnnotationDbi corpcor globaltest]; };
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GoogleGenomics = derive2 { name="GoogleGenomics"; version="1.6.0"; sha256="12jpp6j4pzx5agnshzxa42izxby9iwl5vpaj2c7bh1m07xn35qkg"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
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GraphAT = derive2 { name="GraphAT"; version="1.46.0"; sha256="0gynda9y1px750ffgxprs8nlq85gxfkggvg9g0qdwsw32gn5s2nw"; depends=[graph MCMCpack]; };
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GraphAlignment = derive2 { name="GraphAlignment"; version="1.38.0"; sha256="1p6qswivfmapm0qh58r0chp9jqc0yljpx9c405viss36k2sxv7k0"; depends=[]; };
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GraphPAC = derive2 { name="GraphPAC"; version="1.16.0"; sha256="0xmcg6d5v7qzi9kxvgfigxz2zv0fgpsqrvwq3dckvziqpv214dyc"; depends=[igraph iPAC RMallow TSP]; };
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GreyListChIP = derive2 { name="GreyListChIP"; version="1.6.0"; sha256="16rv1z40j4wkhify0xf24afd7f40pmwjm1r1nq5zhrz4im7skc8r"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; };
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Guitar = derive2 { name="Guitar"; version="1.12.0"; sha256="1mfp56d4wqml5ki5mayq3cd4zidgm0jv1gxl9g04nxp7jzzcm6c1"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; };
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Gviz = derive2 { name="Gviz"; version="1.18.2"; sha256="0gdd1h474gyy7g5cwrjzy6dwddblpg9gqnig5gdcbdzl0ll8kpc4"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
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HCsnip = derive2 { name="HCsnip"; version="1.14.0"; sha256="1vmh1j954pj6xfafcgwc6wfw066clqdggc79360anbr9rlfsmjkw"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; };
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HDF5Array = derive2 { name="HDF5Array"; version="1.2.1"; sha256="07c4xp9v6rvi2zpg5r504rjp041h438djz4x1d28ryxpmp9sgj1a"; depends=[BiocGenerics IRanges rhdf5 S4Vectors]; };
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HDTD = derive2 { name="HDTD"; version="1.8.0"; sha256="0diq8m2qrv42hknyvhzgjxw17jykxaw1qifpm4k4fidp55dgd9qf"; depends=[]; };
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HELP = derive2 { name="HELP"; version="1.32.0"; sha256="0qypbj5vvv0r75izdarh48y94jc1b0msn7rnhkcqkpqcwpdfxgpl"; depends=[Biobase]; };
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HEM = derive2 { name="HEM"; version="1.46.0"; sha256="0gsqfpg10ywskcn782h7saqqhd8y72x4cxd3z9vhwdz3rkf99maf"; depends=[Biobase]; };
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HIBAG = derive2 { name="HIBAG"; version="1.10.0"; sha256="18dr6y6fw85hip4njzaax9sjr02xbwcicjmrxsdq4g8gx5r0rrsh"; depends=[]; };
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HMMcopy = derive2 { name="HMMcopy"; version="1.16.0"; sha256="1syy98jgim2adchcc4ni1xji3ssixbawqafrkzq68fspsh467yc6"; depends=[geneplotter IRanges]; };
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HTSFilter = derive2 { name="HTSFilter"; version="1.14.1"; sha256="145lbxcv0fqqby9y5fzrijvmm6rhmqr0a6n49n8syq03ibg1pa04"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; };
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HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.26.0"; sha256="0zh3zlkgiwk1bsxv3j4bwf300531ifpg5hyniwal732zm7xbbiq3"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; };
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HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.4.0"; sha256="121z3hmpgv3bhg28ns1k570s11gicmsrp4a2y4jndarxrzdi5f7k"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; };
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HTqPCR = derive2 { name="HTqPCR"; version="1.28.0"; sha256="19gfjgf7d2xqb9vr5sg45yp2d0jmqx3s2s2y71wdg48508xf3990"; depends=[affy Biobase gplots limma RColorBrewer]; };
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Harman = derive2 { name="Harman"; version="1.2.0"; sha256="0hdravpr71mp34ix486nx7czrfz9pqg045m4c7rs7d10p0vb76cn"; depends=[Rcpp]; };
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Harshlight = derive2 { name="Harshlight"; version="1.46.0"; sha256="069826gdbb4xzdbizxzfn8z681vvrchk20k8awd7r7n3i01gbz5f"; depends=[affy altcdfenvs Biobase]; };
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Heatplus = derive2 { name="Heatplus"; version="2.20.0"; sha256="0svmlq531jasggndz1n8b6sh97k9pj1i9a0w2k5iz17cpg89w9sp"; depends=[RColorBrewer]; };
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HelloRanges = derive2 { name="HelloRanges"; version="1.0.1"; sha256="11z2d0d98l0wgxd0dicrph6ldrgvdrngibhgkknfshzcs4c6yqkv"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
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HiTC = derive2 { name="HiTC"; version="1.18.1"; sha256="0l3a7f4caj2ijd54swjgz9893hy5yn2bv0gp9mjibj5x0hgrwbmf"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
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HilbertCurve = derive2 { name="HilbertCurve"; version="1.4.0"; sha256="132dn6l3g70wfznwfqg33f7saqn8av2p8nbrbymipavy5jmaki1s"; depends=[circlize GenomicRanges HilbertVis IRanges png]; };
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HilbertVis = derive2 { name="HilbertVis"; version="1.32.0"; sha256="1k2lmvjvzfj73fpfd3ri4ifwvb30kd5k55cssr0cz2fx37rd8hiv"; depends=[lattice]; };
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HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.32.0"; sha256="1v0s125k56nmjpmk4352ygyzi0w8is8ispqgyjcgyfhzn4fs46aw"; depends=[HilbertVis]; };
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HybridMTest = derive2 { name="HybridMTest"; version="1.18.0"; sha256="0g62cgmy6g150fhjx2v4xk8mg6c5glz2h6ry89dr8pk5czfxqwcj"; depends=[Biobase fdrtool MASS survival]; };
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IHW = derive2 { name="IHW"; version="1.2.0"; sha256="1m8m7zhj0hwdnb4z93dh918jynp3amnxwv0yl9zflf54nwg0p8y0"; depends=[BiocGenerics fdrtool lpsymphony slam]; };
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IMPCdata = derive2 { name="IMPCdata"; version="1.8.0"; sha256="15gskfs84anw2x902zhldsh8hzfhyrv9vjlb8qplkmd7prskjs48"; depends=[rjson]; };
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INPower = derive2 { name="INPower"; version="1.10.0"; sha256="135xlhcv3h1rkipdy7vp2knr8gqgcfcsadcrl9a477iaps1ljfg1"; depends=[mvtnorm]; };
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INSPEcT = derive2 { name="INSPEcT"; version="1.4.0"; sha256="15bn5x42igdxrj1fg9fzi2rgy1c24nxgwpqxxipqkippr985ybvg"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; };
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IONiseR = derive2 { name="IONiseR"; version="1.4.4"; sha256="09vv5h8zwwlkc3azw1hb166wbhafdz9q7pd0xxcckwm596sbpnc6"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
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IPO = derive2 { name="IPO"; version="1.0.0"; sha256="05g41kx40n7kv8cc51khg6wql7i8p5h53g873xvccld5vpc8dish"; depends=[CAMERA rsm xcms]; };
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IPPD = derive2 { name="IPPD"; version="1.22.0"; sha256="1p0c5wr7lcarmlchfglmjd7d8r38mm262g8wyj7dljknlbw1p2n1"; depends=[bitops digest MASS Matrix XML]; };
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IRanges = derive2 { name="IRanges"; version="2.8.2"; sha256="0x8h74ik3xwdnwrkn89hq5ll0qa1lp9jgzlbmpa02dpws7snfwyr"; depends=[BiocGenerics S4Vectors]; };
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ISoLDE = derive2 { name="ISoLDE"; version="1.2.0"; sha256="1j9ckl0xq10scrrc0nr7522pz39bd5wapmpkgnlz93rflf90jq3g"; depends=[]; };
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ITALICS = derive2 { name="ITALICS"; version="2.34.0"; sha256="1i4b94wngb6306dq5mx9vnmv69i6pl19c7kwrwmdfiq8hsl47wq1"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; };
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IVAS = derive2 { name="IVAS"; version="1.6.0"; sha256="04qa9i4jkq3w040y3pzklld5p8v1qirr5vpglj3r8i01mj5r7krf"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; };
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Icens = derive2 { name="Icens"; version="1.46.0"; sha256="0mfz0k2p2jsbm1rchylrl2k222p96xjdplnl0zgkhv32747svpv8"; depends=[survival]; };
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IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.18.0"; sha256="1v98zqp5hyix49rlzvpiv289fsivcs602xi9bfhs15p9z33599qy"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; };
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IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.22.0"; sha256="0kvs65qny43q4s0nkm9g8giv4d5qajpr12620208jhwbrm6jpg99"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; };
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IdeoViz = derive2 { name="IdeoViz"; version="1.8.0"; sha256="1irxfpdf8i5zx96bw1v9pz5v0lrjb2z5gxzmfyibgivfp6dl9xj6"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; };
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Imetagene = derive2 { name="Imetagene"; version="1.4.0"; sha256="0h80hwa8ksqwbhrwfvqp09yzlfqncrg0s6j48h9p4rhzf8958k6p"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; };
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ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.2.0"; sha256="1nw7swi6mq2gs8qc8k8psfzfrkxcbdkmc7vz8shsiszxp5idfy8b"; depends=[Biobase data_table ggplot2 gplots gtools pheatmap RCurl reshape2 Rlabkey scales]; };
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ImpulseDE = derive2 { name="ImpulseDE"; version="1.0.0"; sha256="0qaq5gb19zdp4z2vhmn0gm3f1ccc8939nvcmaca34w51g4l1i4c0"; depends=[amap boot]; };
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InPAS = derive2 { name="InPAS"; version="1.6.0"; sha256="1mkp059xzx0r1a3jv59pbwnwwkcg2kyrd2amxblgd27418j3g0mp"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; };
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InteractionSet = derive2 { name="InteractionSet"; version="1.2.1"; sha256="0ax3qlsvm6zqfgli6dm68d1ip1cr74db8xbhs63mb6l84nni14y5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors SummarizedExperiment]; };
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IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.10.0"; sha256="17z67xxq9vs80nl69bv4n9932dvwhsvra7k2wyj4gj1mmh11v6gg"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; };
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JunctionSeq = derive2 { name="JunctionSeq"; version="1.4.0"; sha256="1x7ngcyhcyi5aynp2zig24rpkkmc8bc8b5f4zlfvkxq3igh8gyri"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix S4Vectors statmod stringr SummarizedExperiment]; };
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KCsmart = derive2 { name="KCsmart"; version="2.32.0"; sha256="1ppvnd6rs4bwxjr6qhhz5wd4fx9r3xg2mr0zjs8y7srm3k6k2djl"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
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KEGGREST = derive2 { name="KEGGREST"; version="1.14.1"; sha256="0dcdmbkqxy0d4gg8lqlaflmjljzl9h1p2mlxnmvwgx34vnpx386y"; depends=[Biostrings httr png]; };
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KEGGgraph = derive2 { name="KEGGgraph"; version="1.32.0"; sha256="1r5ib197swfr38ia0g23d78kx0dkgjssjmi5fc18z3nfparhkxdq"; depends=[graph XML]; };
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KEGGlincs = derive2 { name="KEGGlincs"; version="1.0.0"; sha256="0jrfzx0s3xkk19pzm7iffk2cx6njihrclrn3iw2d3zvd015k47l3"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO]; };
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KEGGprofile = derive2 { name="KEGGprofile"; version="1.16.0"; sha256="1ir3vma3n9bh8bkym0h5p2s6wbi7cjsvlz99mc34nkzqn0jxm0yl"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; };
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LBE = derive2 { name="LBE"; version="1.42.0"; sha256="103m1j86mlqrrjzy9w5zms0hksqjbn20jqnrf83fga4z958w32fa"; depends=[]; };
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LEA = derive2 { name="LEA"; version="1.6.0"; sha256="1ckygk393awmd963g7jykmfzcpysgi4d29psc5iqdz0h2cxrczjd"; depends=[]; };
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LINC = derive2 { name="LINC"; version="1.2.0"; sha256="0658n1pqm9ccq0s3al7xiljysfqg06wsr0zn9hqb4bafr7amycnf"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; };
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LMGene = derive2 { name="LMGene"; version="2.30.0"; sha256="07dchmzvdp2m2ky2f0vs32ch7cg2fgibmfwsw0din0rx96q0g3y9"; depends=[affy Biobase multtest survival]; };
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LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.0.0"; sha256="0cbr5124rix2lib3gscx7ci1ir4mj4dy5npmxi506804a27rs6z8"; depends=[CAMERA xcms]; };
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LOLA = derive2 { name="LOLA"; version="1.4.0"; sha256="175k4j4yj3j95gy2h7n3yinqf95l8g2vvhpsqc0j9wrpj0wwqyix"; depends=[BiocGenerics data_table GenomicRanges IRanges S4Vectors]; };
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LPE = derive2 { name="LPE"; version="1.48.0"; sha256="1r86lj75qk9inhslh6m6cvk4d57yqxyxssp85hci3w48axz9gnfg"; depends=[]; };
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LPEadj = derive2 { name="LPEadj"; version="1.34.0"; sha256="0fa4cq3yph30mdlx9wk8k90hwy2plflfz2sahighl0ahx98b7mij"; depends=[LPE]; };
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LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.24.0"; sha256="102r6v36q2m03jfc65l5az4570nf3f30klkhqbsb00w0fqhmyi97"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
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LedPred = derive2 { name="LedPred"; version="1.8.0"; sha256="1hi6y7h7yxw5dgj6aq2z48wf8qaxz9q5qd68m41myicwzgva7b8j"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; };
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Linnorm = derive2 { name="Linnorm"; version="1.2.11"; sha256="07cgs6q6svkf9l9qn41702mzank6v1hm4z3isz9cdxlhz586r4cp"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 igraph limma MASS mclust Rcpp RcppArmadillo statmod vegan zoo]; };
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LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.28.0"; sha256="1pwcdy4gp1vhdx6kgcligmr5pha5hx03yf3r0lidskcrzydk4sms"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; };
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LowMACA = derive2 { name="LowMACA"; version="1.6.0"; sha256="07lgl3hcgdiin1r7ws5g7s0jw371v6qlzici0myjz9hw8p9p8gwf"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; };
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LymphoSeq = derive2 { name="LymphoSeq"; version="1.2.0"; sha256="0mi82fgkl9bn9x9mhx4zw8cg0acmqsmw22v824xd2ik6c3q017pv"; depends=[circlize data_table dplyr ggplot2 ineq LymphoSeqDB plyr RColorBrewer reshape VennDiagram]; };
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M3D = derive2 { name="M3D"; version="1.8.2"; sha256="06hxxvbk2jpbsyksvl7blll70hg2qb1kg44yv0vaa4a12cq8a1k1"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; };
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M3Drop = derive2 { name="M3Drop"; version="1.0.0"; sha256="0adfklx4nzsy2xvz2gngqlyda4a0avdj3yal9brdk27826s2hyqf"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; };
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MADSEQ = derive2 { name="MADSEQ"; version="1.0.0"; sha256="1m4mfrijyin27v0wxvv9p5i6zxiwkc0hmsriccs58qq9x4zi52ik"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM zlibbioc]; };
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MAIT = derive2 { name="MAIT"; version="1.8.0"; sha256="085yih04ah4rbbzcchr6qvb69bbvbwsxbfmzd8wfvjdg9r6z3j8v"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
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MANOR = derive2 { name="MANOR"; version="1.46.0"; sha256="101rdapxpvjd383mykx1l6n3h3xvh6z1q60mxwbndwfl429fypy9"; depends=[GLAD]; };
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MAST = derive2 { name="MAST"; version="1.0.5"; sha256="1462b82alj0lbjl1zpfq8i2h3zxj38r82dvanyipg4m468ynmws7"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr reshape2 S4Vectors stringr SummarizedExperiment]; };
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MBASED = derive2 { name="MBASED"; version="1.8.0"; sha256="0isvf0n0zy7q5vhixnijrmyhdb0zpn74ddqdczgp3j93ripnb04q"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
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MBAmethyl = derive2 { name="MBAmethyl"; version="1.8.0"; sha256="0l3crgq2i263wq5l91dzbj472bp0y4khlxklikfir1793sgzhwi7"; depends=[]; };
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MBCB = derive2 { name="MBCB"; version="1.28.0"; sha256="0n6f61w5dq1hz80s434zzn78nipi75jn8zwaisgi77kb5k2xrss9"; depends=[preprocessCore tcltk2]; };
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MBttest = derive2 { name="MBttest"; version="1.2.0"; sha256="12yqdgw3wzmzvvfdvf8lb5lyif4cpchdk21ik2k7r7qsvfwkcqnd"; depends=[gplots gtools]; };
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MCRestimate = derive2 { name="MCRestimate"; version="2.30.0"; sha256="0sc3grx8l97cdwxvjvbmb7a3hnqbi1f9lqd4a12n2zcwcv6xr8ly"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; };
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MEAL = derive2 { name="MEAL"; version="1.4.2"; sha256="05gk7gs70i36xw4sxzrwlcdkbr9bprqgg0hlqwcynyl3x816s3qr"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 IRanges limma minfi MultiDataSet permute S4Vectors SNPassoc snpStats sva vegan]; };
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MEDIPS = derive2 { name="MEDIPS"; version="1.24.0"; sha256="1gincnn8ay83rzdm3rgd8h9fgg7s1j8i8s22pn1rp073pph582yf"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; };
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MEDME = derive2 { name="MEDME"; version="1.34.0"; sha256="1zrxd0bqayxbbgmpqj77lij58a4szsr3y064mmn4manhmij3hbml"; depends=[Biostrings drc MASS]; };
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MEIGOR = derive2 { name="MEIGOR"; version="1.8.0"; sha256="0m4g0np2f5yab1h1j8swfhkgnl1s2a0xw5cvbg7l5pbmzs2fkxa1"; depends=[CNORode deSolve Rsolnp snowfall]; };
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MGFM = derive2 { name="MGFM"; version="1.8.0"; sha256="0i05pcgk5axjr1piwm5g6wb7zh4hwya1zbvvrfr4v8rwilsyq27z"; depends=[annotate AnnotationDbi]; };
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MGFR = derive2 { name="MGFR"; version="1.0.0"; sha256="0qbmndrvn19h8vnx2qhcpa175hvid1vlnzzi9177x73naj2lyyv3"; depends=[annotate biomaRt]; };
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MIMOSA = derive2 { name="MIMOSA"; version="1.12.0"; sha256="0nzl95cnhf9d38v8gaxy2hlqgxbzzllvh71k5sa335zfr0p1lzr8"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
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MLInterfaces = derive2 { name="MLInterfaces"; version="1.54.0"; sha256="1fg8l1digl14ijr53bwarbqwcaj5374vmqdkvy5jfg2s06iwdkym"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; };
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MLP = derive2 { name="MLP"; version="1.22.0"; sha256="0awiqvhzzvgqmacks3yxl4a6savc39dv6brf8m0lz9rcl6cgzsza"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
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MLSeq = derive2 { name="MLSeq"; version="1.14.1"; sha256="1wdh4rpsfnv1nzypgqm4y9c4vzv9z8snrb0nh2s9ssbcc7cwkpl7"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; };
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MMDiff2 = derive2 { name="MMDiff2"; version="1.2.0"; sha256="1zy8whabpqbl1cfhh6bjax97snyy6pqfd8dqa7w21s6y4wg9krzd"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; };
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MODA = derive2 { name="MODA"; version="1.0.0"; sha256="1fh26d0gfisif8v1ms321mj08202kfqngvghpg1xzr28cp59h9c8"; depends=[dynamicTreeCut igraph WGCNA]; };
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MPFE = derive2 { name="MPFE"; version="1.10.0"; sha256="1d2b3mhcjxvdq99iqj96gygq9bivg95n2n7jxscy3gdkzpf70336"; depends=[]; };
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MSGFgui = derive2 { name="MSGFgui"; version="1.8.0"; sha256="0g8pygqqxb4g5hh47n9jwikim8hakrbppn85ydzq4hvrsjysjdxz"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
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MSGFplus = derive2 { name="MSGFplus"; version="1.8.0"; sha256="104h4f0jnhswn4sbr5r1ivd7g1r4gdrrjj3a0kd7p3ckl542vwcq"; depends=[mzID]; };
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MSnID = derive2 { name="MSnID"; version="1.8.0"; sha256="0fkk3za39cxi0jyxmagmycjdslr2xf6vg3ylz14jyffqi0blw9d5"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; };
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MSnbase = derive2 { name="MSnbase"; version="2.0.2"; sha256="0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn XML]; };
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MSstats = derive2 { name="MSstats"; version="3.6.0"; sha256="1p9000y7ca94vingg1gdd6sdxy3p0njqdinxhy3raf4gb4hmnv7y"; depends=[data_table ggplot2 ggrepel gplots limma lme4 marray minpack_lm MSnbase preprocessCore Rcpp reshape reshape2 survival]; };
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MVCClass = derive2 { name="MVCClass"; version="1.48.0"; sha256="1jd2vh63j4jj0q4x05drrwfkn7qddxq96403ambkavcxcxs3z0x7"; depends=[]; };
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MantelCorr = derive2 { name="MantelCorr"; version="1.44.0"; sha256="1r1lb71mw7fqlmfai7d2lbij3n9pjpvvng8lx0fpbzaxghrbcd37"; depends=[]; };
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MassArray = derive2 { name="MassArray"; version="1.26.0"; sha256="152wy0h3zrfqyf444m7mcp6gvnx4q10ahj5nziwdp26k7zjm4jx9"; depends=[]; };
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MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.40.0"; sha256="0c734mvynmyir7pcfy8igvvxk8y3hvcpkazsjljykfjvjs47x49p"; depends=[waveslim]; };
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MatrixRider = derive2 { name="MatrixRider"; version="1.6.0"; sha256="0khdgn3kcj1mw5z8d2cz781n56myqgxalycg9317dap6r2hng11x"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; };
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MeSHDbi = derive2 { name="MeSHDbi"; version="1.10.0"; sha256="1jyz50q4svakq8ckwnrfyc568ryhg3jxl920v7s477nxj2854pa1"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; };
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MeSHSim = derive2 { name="MeSHSim"; version="1.6.0"; sha256="1ab92abmyw469v4gzk6ki95j5m9ivdwr7v74hgh8jr5zw674gfzp"; depends=[RCurl XML]; };
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MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.46.0"; sha256="046yc0bvqxxh5x83zy7qq6b5cyhzkcg78bgyzz9w7lb7sim0h491"; depends=[]; };
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MergeMaid = derive2 { name="MergeMaid"; version="2.46.0"; sha256="07ann5kkbp0kz2cplks934yy20ixnqjz1fnhd292lbsq493www1x"; depends=[Biobase MASS survival]; };
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Mergeomics = derive2 { name="Mergeomics"; version="1.2.0"; sha256="187w71dr1brjz6fhdlxxvanipn9rmkyfrp5ij943y3jca0iibbij"; depends=[]; };
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MetCirc = derive2 { name="MetCirc"; version="1.0.1"; sha256="09mw5nqvp5pj8dma7fqdiiw5qqxm3m51s2r4ji3shiliq961bkw4"; depends=[amap circlize scales shiny]; };
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Metab = derive2 { name="Metab"; version="1.8.0"; sha256="1kb41ld1fxggmwa4chzpwnfy6473jhs79386k0py9i7z9myaf7pj"; depends=[pander svDialogs xcms]; };
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MetaboSignal = derive2 { name="MetaboSignal"; version="1.4.0"; sha256="08j76zdkzg42j3x1h5dzw7qkx44fcj7bwigrv452s6frkanhb5ij"; depends=[AnnotationDbi biomaRt hpar igraph KEGGgraph KEGGREST mygene org_Hs_eg_db RCurl]; };
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MethPed = derive2 { name="MethPed"; version="1.2.0"; sha256="0phja8mf6vi913kjypbyx25j9bgqj25iis4jz1y7hbafvy3vx4x8"; depends=[Biobase randomForest]; };
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MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.6.0"; sha256="15vbqsci33fbcz94va64w53qnzx4hqzv2ss4myhy9kavk4h5ma07"; depends=[Biostrings gplots seqinr stringr]; };
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MethylAid = derive2 { name="MethylAid"; version="1.8.0"; sha256="0c2y6r72ypgc9rjyk4779l0s3x3wpdm88ygab5zdfi9sgy108r4x"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; };
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MethylMix = derive2 { name="MethylMix"; version="2.0.0"; sha256="06zq28ns2h2l6zlrwhgrf80ac679fq3qbrlcn0rshwz2vwbk6xha"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; };
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MethylSeekR = derive2 { name="MethylSeekR"; version="1.14.0"; sha256="06kixgxrla3rvxf6xsg4r4yxi9qld6kx82p9xv2x978qsx717frr"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
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Mfuzz = derive2 { name="Mfuzz"; version="2.34.0"; sha256="1bzi6kwpbkr8g4zqxw517grl2sc4pq6ph4m4vb4hmn6x6qxlijlr"; depends=[Biobase e1071 tkWidgets]; };
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MiChip = derive2 { name="MiChip"; version="1.28.0"; sha256="0lxdcmfy1gpfpmnagg2649dbq9rj13rggv43n79l2f033awbpsp8"; depends=[Biobase]; };
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MiPP = derive2 { name="MiPP"; version="1.46.0"; sha256="1280c04222l2hbapbw7k6rnsi8hrbpd0w49gvx50sl0mkl3zq5gh"; depends=[Biobase e1071 MASS]; };
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MiRaGE = derive2 { name="MiRaGE"; version="1.16.0"; sha256="17ys0qwz8y4ka81ynzp46fcy5qi6mw7y7vsffqvgnsf587bdj9ia"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; };
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MineICA = derive2 { name="MineICA"; version="1.14.0"; sha256="0si7l560d14vhz4k8p0c1fqmr85f91zcfz3vh0fbnyg3m4rh8yz2"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
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MinimumDistance = derive2 { name="MinimumDistance"; version="1.18.0"; sha256="1zl8ravn0dpb6ca3f9k92p7wdhz7afjy7cx28nx0hv71aqk1q5i8"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
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Mirsynergy = derive2 { name="Mirsynergy"; version="1.10.0"; sha256="1w98swg02n1gfk1cgjvzi09wwymn8v6v3gjlm58sgj0j47h8l4c6"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; };
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MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.24.0"; sha256="1g6wlk8qlszc42jqrdlwa340p69h7fk7nmdrk0k0rdl1mmjsmcs9"; depends=[Biobase lattice limma statmod vsn xtable]; };
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MoPS = derive2 { name="MoPS"; version="1.8.0"; sha256="1z0m6c61sp6cljaibskrk8xywpkgx4m3d2s8rdq3hs99x6w1f200"; depends=[Biobase]; };
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MoonlightR = derive2 { name="MoonlightR"; version="1.0.0"; sha256="10r0vnyig561d5hrvhbb3srr6v1lndgjxabj03adhmn7nbv4iija"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; };
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MotIV = derive2 { name="MotIV"; version="1.30.0"; sha256="1zq22llziicgfsh9ykf8blf9593h4yw3nhr58alvvp5hjjh2pz3r"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; };
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MotifDb = derive2 { name="MotifDb"; version="1.16.1"; sha256="105a320znvrdkwvsixv1ddaiax1ay87wr4675pv4j79xdjh7by2z"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; };
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Mulcom = derive2 { name="Mulcom"; version="1.24.0"; sha256="0mlmb9lk71676dz45812ni72vbid2hv2v9b1i437dr69qnppm126"; depends=[Biobase fields]; };
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MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.0.1"; sha256="0vq7xfw3wv7i07v57qz2b3v599mfp27p6fxadlsqjql9v5jy6kk6"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors shiny shinydashboard SummarizedExperiment]; };
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MultiDataSet = derive2 { name="MultiDataSet"; version="1.2.0"; sha256="04hrqi8x2fsfnpyk344kfrvfl66mv1lx3kdqs7ga9wnfq98b82b2"; depends=[Biobase BiocGenerics GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi S4Vectors SummarizedExperiment]; };
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MultiMed = derive2 { name="MultiMed"; version="1.8.0"; sha256="1185flg1grb14m00km2v6z4ypl5lh6p4p05wsxq231g255aljq64"; depends=[]; };
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MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.0.0"; sha256="1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF plyr pracma reshape2 SummarizedExperiment VariantAnnotation]; };
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NCIgraph = derive2 { name="NCIgraph"; version="1.22.0"; sha256="1dbbnlbbjqvmb8adppkacl7qrxic4gavvcmh0cafpvsm3ybs4zvb"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; };
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NGScopy = derive2 { name="NGScopy"; version="1.8.0"; sha256="0hc103pa3qbd6pd4578wdrczd4sljhb408lclkjlv3abdc6x7247"; depends=[changepoint rbamtools Xmisc]; };
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NOISeq = derive2 { name="NOISeq"; version="2.18.0"; sha256="0iw4zy01a0lk6n60q4kw3jmgha41dxchidzg9rbsbsci3ysnl3h5"; depends=[Biobase Matrix]; };
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NTW = derive2 { name="NTW"; version="1.24.0"; sha256="0cqc8rgkx9gqhkc62csyws7c23nf94pwigiq5myirgamga314cqb"; depends=[mvtnorm]; };
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NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.4.0"; sha256="06zln140q6r00mhi820hzgw5zincr1kg56h3387iikyw4hyq53s2"; depends=[Biobase matrixStats]; };
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NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.6.0"; sha256="0848h8dmbk0gj4w0p77bi6byqil76ggaikqqdxflyzv39zkw28sc"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; };
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NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.18.0"; sha256="02g8rbqaddcy4w9i2ma0xmzdb84bykba3p3zmv1lylh77knmxdrw"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; };
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NetPathMiner = derive2 { name="NetPathMiner"; version="1.10.0"; sha256="0ssbmp0qkvnvii646zj2qiwzrn8cyi6jvg7h937vbr6vnzv643cg"; depends=[igraph]; };
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NetSAM = derive2 { name="NetSAM"; version="1.14.0"; sha256="1jzlpnnry9lbnfvrks5fz14nwkvg3r8pp8f5lw63izg0fx1m5ypm"; depends=[graph igraph seriation]; };
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NormqPCR = derive2 { name="NormqPCR"; version="1.20.0"; sha256="1qik5gvzvj4zzfllj5p9cryfwq8z33jziv6p5gyfndyn5b9p2sq6"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
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NuPoP = derive2 { name="NuPoP"; version="1.24.0"; sha256="1aqw86yn9pq1901qzqjvjw9sfqpnnqn29pagdrxqd6858x034w6n"; depends=[]; };
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OCplus = derive2 { name="OCplus"; version="1.48.2"; sha256="04drljh5m46v9gpvfgwgajq9kn1ycb7fhbxxk6j4xq89ddlz1dk7"; depends=[akima multtest]; };
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OGSA = derive2 { name="OGSA"; version="1.4.0"; sha256="0i2w0g4310sg1zy4z7bc9ajr4yizf313bpzwgzjngx51hsyjk9ws"; depends=[Biobase gplots limma]; };
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OLIN = derive2 { name="OLIN"; version="1.52.0"; sha256="1q0p8jry2nw3w1a4zan0kwgc87nk2v2psnw00m5m6m0a1j9drryd"; depends=[limma locfit marray]; };
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OLINgui = derive2 { name="OLINgui"; version="1.48.0"; sha256="168bbsacsj74ah84zbfi7h2bpnz7zclbykl9rwaic8gr4ymgz1qw"; depends=[marray OLIN tkWidgets widgetTools]; };
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OSAT = derive2 { name="OSAT"; version="1.22.0"; sha256="0f4lz86g8205hbbdka50a6s1gbdb19zqjna4gwakb4w3ni53gqhg"; depends=[]; };
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OTUbase = derive2 { name="OTUbase"; version="1.24.0"; sha256="0xxha9f2f2qfzb8cv4m59grbyv011w9f27zm3cq64affgzwnb5r2"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
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OmicCircos = derive2 { name="OmicCircos"; version="1.12.0"; sha256="0q6ngrf5cyy6hyvhhhrx6ldbij7b051fgdsknm7qb4xzbsk5i75k"; depends=[GenomicRanges]; };
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OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.8.1"; sha256="0y38441v5lnj25w3qw5d4f6bijf3c9jzxp57jjhhj12vxqmrdajy"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
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OncoScore = derive2 { name="OncoScore"; version="1.2.1"; sha256="1f8nx3p8dik5b8yvpn7pvk5iy5vyy5fjgy49d3czkfwp1dzis49d"; depends=[biomaRt]; };
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OncoSimulR = derive2 { name="OncoSimulR"; version="2.4.0"; sha256="0a1m54x14f6rz9sz9m1kwlxl8xl3vlxqz3iq5qrs8n36crqbx3nj"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr]; };
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OperaMate = derive2 { name="OperaMate"; version="1.6.0"; sha256="152qxkf4qnkjj4grk0jsysh80daybgw6ywwm1h8l6lk64q0dhl6w"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; };
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OrderedList = derive2 { name="OrderedList"; version="1.46.0"; sha256="1wfpypaimvzisv032irbsmk766zxq1xqh8q0qn9ipqp9hrp7mrlb"; depends=[Biobase twilight]; };
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OrganismDbi = derive2 { name="OrganismDbi"; version="1.16.0"; sha256="0pj1qfz015203dkkik49i00jlvbbzh1p4lz2jgpk2iqx8n0yx923"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
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Oscope = derive2 { name="Oscope"; version="1.4.0"; sha256="1cxmz482wlqvkcz9x3riwn01kz5flyzyg41ygs0flkjml64dp7hj"; depends=[BiocParallel cluster EBSeq testthat]; };
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OutlierD = derive2 { name="OutlierD"; version="1.38.0"; sha256="10lwi35l9iv2hx7hra43i0b6n1r853rdzcbwir4m34iijjxjx9db"; depends=[Biobase quantreg]; };
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PAA = derive2 { name="PAA"; version="1.8.0"; sha256="0kv6mxczp0mwmhyqlq2qxzzhzapl2ijmr6063aw6klsh03q1n73m"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; };
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PADOG = derive2 { name="PADOG"; version="1.16.0"; sha256="0f0rl44sclmbcqfsw086nalhzxrjc04yml89xwgnjny4f5kh7sri"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; };
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PANR = derive2 { name="PANR"; version="1.20.0"; sha256="0ml99gy3fi55qqj6k9hbs5hwvf51344k0anwx30hnpk1xsxvcjy0"; depends=[igraph MASS pvclust RedeR]; };
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PAPi = derive2 { name="PAPi"; version="1.14.0"; sha256="18mnm303ryyz912m6yqnc2fbdhkin1v45jb55dxaplpzh57hmsxg"; depends=[KEGGREST svDialogs]; };
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PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.38.0"; sha256="0sws413s9gy9zkaj007wbbgkk8ghh38kzr28kmpjwviga09142zr"; depends=[AnnotationDbi Biobase DBI RSQLite]; };
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PCAN = derive2 { name="PCAN"; version="1.2.1"; sha256="07yhqzvvmhldlvg7d2zg3shwlhnpm381rwrbfcrazhf2bgysd9kd"; depends=[BiocParallel]; };
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PCpheno = derive2 { name="PCpheno"; version="1.36.0"; sha256="08pxms6hs82ngjh7vcjqh7m5jchznss4i7izm37dwxp1nmy83bhy"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; };
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|
PECA = derive2 { name="PECA"; version="1.10.0"; sha256="1g91z0ywbm7ck9bi9a2v75hx98hvxvi1b6h8wlzv6gjjsv2z849a"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; };
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PGA = derive2 { name="PGA"; version="1.4.0"; sha256="12fwd2c7psp5ffmi7z81a33ynjg0khikccp5qjyin76bvnqxx7sw"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; };
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PGSEA = derive2 { name="PGSEA"; version="1.48.0"; sha256="0yn1ayvf6g8g3w5lakp3224qm3h2h984zii7n7cqnzl8gciwxyb4"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; };
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PICS = derive2 { name="PICS"; version="2.18.0"; sha256="1vzsrmyk4l19z0a7i9gzmrymks3jh2c8rfib6g7kn9z5pwbw56l1"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
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PING = derive2 { name="PING"; version="2.18.0"; sha256="0rlx8dasj51xnj3nwvx4sjia7di9q3sawmz5zhp6a2kfacgss0lc"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; };
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PLPE = derive2 { name="PLPE"; version="1.34.0"; sha256="1d2m9xxhvmgjn92dv1i8x7yzam377hzj6ibb3d4rmqmbjs446cdk"; depends=[Biobase LPE MASS]; };
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PREDA = derive2 { name="PREDA"; version="1.20.0"; sha256="07477ps2whj4h0ph5kdjra4x6jlc0xyii2yp338jhgrhdnpxwjqx"; depends=[annotate Biobase lokern multtest]; };
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PROMISE = derive2 { name="PROMISE"; version="1.26.0"; sha256="1ybgzw043fm0lzayq4ddqwgr6j5bd3a0r73aica5bg8hzr5x1pll"; depends=[Biobase GSEABase]; };
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PROPER = derive2 { name="PROPER"; version="1.6.0"; sha256="15xqwbn098vv0h8f0cz8nzxb5swf83idb2gd25k1vzh4nv34vr4m"; depends=[edgeR]; };
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PROcess = derive2 { name="PROcess"; version="1.50.0"; sha256="1l0kbd0b2xarw7wc4mkvyb0ixkky7slqd3w5r41isppa4wanvvjn"; depends=[Icens]; };
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PSEA = derive2 { name="PSEA"; version="1.8.0"; sha256="0rkf4w35xgkwa2mc5h65nf5kc61cv1p3xmyz0pg0cim8q50y5wsh"; depends=[Biobase MASS]; };
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PSICQUIC = derive2 { name="PSICQUIC"; version="1.12.1"; sha256="1948cs1ygx16kj9kj1ip2l7k2za51zkknc1sm2n51zhl7ywk9dnv"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; };
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PWMEnrich = derive2 { name="PWMEnrich"; version="4.10.0"; sha256="152vkwaabwsyrgh2hdkp63gac418k4yl1iwvli45ax6cv2mb1c81"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; };
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PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.2.0"; sha256="09x527v5iwhnn4gn52xlk40553lzcgfwrmrc2qn9kv791rf7k743"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; };
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Path2PPI = derive2 { name="Path2PPI"; version="1.4.0"; sha256="0y3pz6sdrv0szi068w78kdpksxqa6dqjg3vy5sqdvj0y4sr0ss0w"; depends=[igraph]; };
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PathNet = derive2 { name="PathNet"; version="1.14.0"; sha256="1hj9k43sb9vjryphma140g1fmqnrgj2dkcy11b0dksd9mdlldwvg"; depends=[]; };
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PathoStat = derive2 { name="PathoStat"; version="1.0.0"; sha256="01vn24q4l7rbwksbdk0srac2rr352912bmr0brdjjfh3y9v26j8p"; depends=[alluvial ape BatchQC BiocStyle corpcor dplyr DT ggplot2 gtools knitr limma matrixStats MCMCpack pander phyloseq plyr rentrez reshape2 rmarkdown scales shiny tidyr XML]; };
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Pbase = derive2 { name="Pbase"; version="0.14.0"; sha256="0r42974jfylqf51i00n9b1axzmqb3kv9idj6p4dz5hq223r18x1j"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; };
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PharmacoGx = derive2 { name="PharmacoGx"; version="1.4.3"; sha256="1cfly0xfd7sgiv65kmmb3899glvzzypb8za9prv569d7h6vz9yq8"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer]; };
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PhenStat = derive2 { name="PhenStat"; version="2.8.0"; sha256="1cmpkv11s55ackgdvqmhidijznnvy1xpfhqdw3h0b11vrwi17d1a"; depends=[car logistf MASS nlme nortest]; };
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Pi = derive2 { name="Pi"; version="1.2.1"; sha256="0b79qf119n3737n1bifnc3qb36jsyh4c9h76svqy1rpkh68pairi"; depends=[dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel igraph MASS Matrix randomForest ROCR scales supraHex XGR]; };
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Pigengene = derive2 { name="Pigengene"; version="1.0.0"; sha256="16s46alh0vm31crn3dzsf91k53v3j2hgn0rqzm1wvyw61y05la26"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; };
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Polyfit = derive2 { name="Polyfit"; version="1.8.0"; sha256="0r87xv86mivdgyifvp9snmxswsyvmsif4zkzp24wycypza7wr3l3"; depends=[DESeq]; };
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Prize = derive2 { name="Prize"; version="1.5.1"; sha256="11rzkwrkq329g2a6wzbk9yxbjza2qihdxk9l35fd39vmdw6ykfr5"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; };
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ProCoNA = derive2 { name="ProCoNA"; version="1.12.0"; sha256="0k7nb2cq1xn64m96wjvn5g18kbpigslcf99hyv03ib7r790h32qy"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; };
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Prostar = derive2 { name="Prostar"; version="1.6.1"; sha256="1gj9d425wxk57rf0qk8m9k9xxgmv02wbwjg1h4nl9q7c23vmxsbg"; depends=[DAPAR DAPARdata data_table DT rhandsontable shiny shinyAce shinyjs sm]; };
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ProtGenerics = derive2 { name="ProtGenerics"; version="1.6.0"; sha256="0hb3vrrvfx6lcfalmjxm8dmigfmi5nba0pzjfgsrzd35c8mbfc6f"; depends=[]; };
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ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.4.0"; sha256="0iwcsnv05g83plsb8wdgpa9lzp136pfl7qyp3yqik1fn62s32fj4"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; };
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PureCN = derive2 { name="PureCN"; version="1.2.3"; sha256="0h3w3d1dnr8ng0cg54jp02v1v6zhn8csrli9cpbszjgrn9dfxybx"; depends=[Biostrings data_table DNAcopy GenomeInfoDb GenomicRanges IRanges RColorBrewer Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; };
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Pviz = derive2 { name="Pviz"; version="1.8.0"; sha256="1m2s37bzlxkih4c868wq3n8y3mg161laxh5p1789k3w32nlli89c"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
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QDNAseq = derive2 { name="QDNAseq"; version="1.10.0"; sha256="0pa9r9pndk2viv7xcy961c26vx2afpc4rr7dl5zihsgb4y2az8vc"; depends=[Biobase CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; };
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QUALIFIER = derive2 { name="QUALIFIER"; version="1.18.0"; sha256="06aamgjl3bay76wdjzqfkwcmj9bwkvbrgv542zwqppv059an9wxf"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
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QUBIC = derive2 { name="QUBIC"; version="1.2.1"; sha256="15mqx8aqhk7hhhlingri1l27dydfv3vaqjvjmpa4lh7a0p9ac2rg"; depends=[biclust Matrix Rcpp RcppArmadillo]; };
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QuartPAC = derive2 { name="QuartPAC"; version="1.6.0"; sha256="0mh2rzh3cp0n0ky133iiy1zgv1q90ilqspi4l8r5d3mqi2bs056n"; depends=[data_table GraphPAC iPAC SpacePAC]; };
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QuasR = derive2 { name="QuasR"; version="1.14.0"; sha256="1330vlvsfypr0pl7arawks4d80yjk2afn637ivcnbhrchkmicfdv"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
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QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.2.0"; sha256="0bnnh4p7ifj9kpx29x2scy7qshnbnwr9a2bzyi5npqss6nd68fpy"; depends=[Rcpp]; };
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R3CPET = derive2 { name="R3CPET"; version="1.6.0"; sha256="1f345ci24ff1fj5i509ar8900gf4850cc88b0h7w0wm14k76s6dk"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; };
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R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.24.0"; sha256="02s8rxcv1k41v2nzrpzhbh7l7hhyp94k61cic35kvbd84xs8bwvl"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
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R4RNA = derive2 { name="R4RNA"; version="1.2.0"; sha256="0hl5khn72nid1f9863nl8wyh98xgj2zx3yp0bf7q5ja5559kqnj7"; depends=[Biostrings]; };
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RBGL = derive2 { name="RBGL"; version="1.50.0"; sha256="1q14m8w6ih56v680kf3d9wh1qbgp7af33kz3cxafdf1vvzx9km08"; depends=[graph]; };
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RBM = derive2 { name="RBM"; version="1.6.0"; sha256="0h0qzn1hp5g167z5r5p9b445v8nqmvzg3ixyj709zh66y93nqcwx"; depends=[limma marray]; };
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RBioinf = derive2 { name="RBioinf"; version="1.34.0"; sha256="1q20v3h2zxxa5i655fdd6zyn3glga52mpq0dpmdrlx4yxb4pw3ms"; depends=[graph]; };
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RCAS = derive2 { name="RCAS"; version="1.0.2"; sha256="0rim13lnh1pc5ks33x1pa63mlrn64fmmpwy7d10ypplrvn7sq75a"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges knitr motifRG org_Hs_eg_db plotly rmarkdown rtracklayer S4Vectors topGO]; };
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RCASPAR = derive2 { name="RCASPAR"; version="1.20.0"; sha256="070j74bsjg3rq6bhi201r1vajcim8kzf99hpjcswq358q070ghbl"; depends=[]; };
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RCy3 = derive2 { name="RCy3"; version="1.5.2"; sha256="1jkjg6byb5rwny0q77xmsc2gnppxcym59rcdn5kpgvd33l7jwnbn"; depends=[graph httr RCurl RJSONIO]; };
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RCyjs = derive2 { name="RCyjs"; version="1.6.0"; sha256="1dh16hhm32hhk4nb12kw17gxpsg6513grvddialxhjzi21j2y698"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
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RCytoscape = derive2 { name="RCytoscape"; version="1.24.1"; sha256="1al8w3nz19abxxsnifgzb9myciacws79z2i2ffx29yvfhcsk2z7s"; depends=[BiocGenerics graph]; };
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RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.12.0"; sha256="1320ky26p0zq90qb5x2ysbzrz3ipcp04jz74r11qzivxzb1hzkrl"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; };
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RDRToolbox = derive2 { name="RDRToolbox"; version="1.24.0"; sha256="1z0p6wi6l0lg8y4ffi5mnlm6hxlv3rx2wrlvzdqrv7pbg6vnv2m2"; depends=[MASS rgl]; };
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REDseq = derive2 { name="REDseq"; version="1.20.0"; sha256="0wfmqanrjmrnj7prxvci3m5qaw8y8qqml6jwnbjn42b7qk57l8n6"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; };
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RGSEA = derive2 { name="RGSEA"; version="1.8.0"; sha256="1fqlvshy4yp17v1cvjvgyiv23zcccrqs7l6mvapb2cs1q67bfhhx"; depends=[BiocGenerics]; };
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RGalaxy = derive2 { name="RGalaxy"; version="1.18.0"; sha256="13r07fhas3bqmblydrc1h7r2sz1knc082iay5n8zi94x7bb5vx8b"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; };
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RGraph2js = derive2 { name="RGraph2js"; version="1.2.0"; sha256="0shkmaxsdj078vk2h3n80cfmibxnz50mlr55hbi6vf3awj81iy1x"; depends=[digest graph rjson whisker]; };
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RIPSeeker = derive2 { name="RIPSeeker"; version="1.14.0"; sha256="1yvn9d4psifkipv1mp42qi5h09a5023cbf7mhw6nmyqpkcw4bwjd"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
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RImmPort = derive2 { name="RImmPort"; version="1.2.0"; sha256="0pl2zd9y2skhxp1clnv0y7dyi4ib2pj5a6rbq9f0nqjcwqc251h0"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; };
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RLMM = derive2 { name="RLMM"; version="1.36.0"; sha256="0h7k448ajdpvqbq5vi0lx38sc581hv74224fi0grdrk9s56n3993"; depends=[MASS]; };
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RMassBank = derive2 { name="RMassBank"; version="2.2.1"; sha256="1jkn5y8bwic6nmcd9jhs8i5kfwmldxfylapassrmzjbfg7jil4gm"; depends=[Biobase digest MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; };
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RNASeqPower = derive2 { name="RNASeqPower"; version="1.14.0"; sha256="1yzd5z1dbav72w1df0z93810ym09hbmghwikkv7b8y0b2blkigcy"; depends=[]; };
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RNAinteract = derive2 { name="RNAinteract"; version="1.22.0"; sha256="0nlz20hwyrycya82wdkaj962q1zpgncf4sjawiczz7wagll61rsm"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
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RNAither = derive2 { name="RNAither"; version="2.22.0"; sha256="0saq1yichxgr12wcb2d6xd5qixxisk992drza82gv31c1sq8i5vx"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; };
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RNAprobR = derive2 { name="RNAprobR"; version="1.6.0"; sha256="1j6mrih9aqcy3d9xh05aj1p3a39ivnj0k6i482ax1l4cq7gvna7x"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; };
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ROC = derive2 { name="ROC"; version="1.50.0"; sha256="0bm9vp0viyjr4xcar2b5dl0fbpy9fmnkrg0hzvhillrlh0xzzhwk"; depends=[]; };
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ROTS = derive2 { name="ROTS"; version="1.2.0"; sha256="1grfw0bxb5fv4sy9xbwa8ydppr6g77qw8q9rminjnfqdafpqkakk"; depends=[Biobase Rcpp]; };
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ROntoTools = derive2 { name="ROntoTools"; version="2.2.0"; sha256="0lq5al7g4r58wc0byyj2a49m9dcj1llcys9hdwlns1ahzvw6d76h"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; };
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RPA = derive2 { name="RPA"; version="1.30.0"; sha256="0dq6g94jb6zam5fb667finkdn6mavvi5dnxws4dgvjw1qrlwg7vl"; depends=[affy BiocGenerics phyloseq]; };
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RRHO = derive2 { name="RRHO"; version="1.14.0"; sha256="0iwg3hjxc9avm8mysrx0ix03ncwik0iikph9j6jgd7y7dczq3y1j"; depends=[VennDiagram]; };
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RSVSim = derive2 { name="RSVSim"; version="1.14.0"; sha256="123fly20prx0g8bjbgqwfwrh73xjrq4xbl45rsp9q84kgi6w07i3"; depends=[Biostrings GenomicRanges IRanges ShortRead]; };
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RTCA = derive2 { name="RTCA"; version="1.26.0"; sha256="07kb4zh14g2lvqyicmig29wn50i4sz8bcxg4vq74019al2xj7fsv"; depends=[Biobase gtools RColorBrewer]; };
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RTCGA = derive2 { name="RTCGA"; version="1.4.0"; sha256="0y8d0y043n0ragn1saz0rw5lbx6g04ara7iggn4df5w5xzg6rm08"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; };
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RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.4.0"; sha256="16p872nl9470f7yksdy73n5kwn4mlgsfjkndjg50z59sbbhc7h68"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; };
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RTN = derive2 { name="RTN"; version="1.12.0"; sha256="19rsyr07hq17jah063w74dck9c0yjn6s2i73afawbdjpcqzcrz1n"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; };
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RTopper = derive2 { name="RTopper"; version="1.20.0"; sha256="11vqgq594z3di5pa89irrnaiynxmi332g6d35za0glhpba3bj5bz"; depends=[Biobase limma multtest]; };
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RUVSeq = derive2 { name="RUVSeq"; version="1.8.0"; sha256="043dmg1ggfvkn8vjaz4k9qvkjrc4ncm4p74iarh02mk0pzx5m9f9"; depends=[Biobase EDASeq edgeR MASS]; };
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RUVcorr = derive2 { name="RUVcorr"; version="1.6.0"; sha256="13c9l874qlikk5qi8qbfdy9q749xsknf9rl7pz46n03j74afad86"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
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RUVnormalize = derive2 { name="RUVnormalize"; version="1.8.0"; sha256="1hsw0y9s2890z6vim5xjp95p3gdxcy1x2paw276rrgwbz1xda1p1"; depends=[Biobase RUVnormalizeData]; };
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RamiGO = derive2 { name="RamiGO"; version="1.20.0"; sha256="0a61368vzjljqwk3zvd92fb8h6hgr1baiww28531kqadjf83f8nr"; depends=[graph gsubfn igraph png RCurl RCytoscape]; };
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RankProd = derive2 { name="RankProd"; version="3.0.0"; sha256="02k3977y55qph3jx86q4s4dkhndfsbcqq2xgk4xn1nglr64z4azv"; depends=[gmp Rmpfr]; };
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RareVariantVis = derive2 { name="RareVariantVis"; version="1.8.0"; sha256="1irnj6331sr6387k922x6548pk7727vwlzy15awjxcrqlzi5jmim"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; };
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Rariant = derive2 { name="Rariant"; version="1.10.0"; sha256="1sl9wxdkhac2s5sp93mavpxdmif6pkmki95xm1ci8rhms7jg66xr"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
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RbcBook1 = derive2 { name="RbcBook1"; version="1.42.0"; sha256="1plcslp68xmr0727wj9v82yyc7lf4n76ixnh6k9lnrrs1ayzz2i9"; depends=[Biobase graph rpart]; };
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Rbowtie = derive2 { name="Rbowtie"; version="1.14.0"; sha256="11sl03ljkq7hkm6ilw91bh4p2lz6iw35xn0f5fyh37i0j5nrmikh"; depends=[]; };
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Rcade = derive2 { name="Rcade"; version="1.16.0"; sha256="05jg13qmrg11d9gkm76d2c3drlzk5l7ld7c57f5fysakg49qbxsd"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; };
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Rchemcpp = derive2 { name="Rchemcpp"; version="2.12.0"; sha256="140hwsb7b0cdps5vzjjv4hjcli58g1mkbapxkd8692hjd6ncvpsj"; depends=[ChemmineR Rcpp]; };
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RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.14.0"; sha256="0w4gzcml89ww8br6xqc903ygbkmzfl5xq13k4lngcbis7b7xmxpj"; depends=[flowType graph Rgraphviz sfsmisc]; };
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Rcpi = derive2 { name="Rcpi"; version="1.10.6"; sha256="0cqy9fr1dg85fwgkilyflwarqs0dp98xrx78xzysh0nckwbqj6mz"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
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Rdisop = derive2 { name="Rdisop"; version="1.34.0"; sha256="0fvwv7mm771wa86by3clbrx9sh7hflp1kmcyjj3xnbilwyyglvsg"; depends=[Rcpp RcppClassic]; };
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ReQON = derive2 { name="ReQON"; version="1.20.0"; sha256="1bg7y50zh6zd6v8pmvzdzpd51nazl7ymdx57ydc5ngai372g6s0j"; depends=[rJava Rsamtools seqbias]; };
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ReactomePA = derive2 { name="ReactomePA"; version="1.18.1"; sha256="033cq1pjd03h543abz35mz6vdcxk9ai879b2f8jxppbrmhyi3jij"; depends=[AnnotationDbi DOSE graphite igraph reactome_db]; };
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ReadqPCR = derive2 { name="ReadqPCR"; version="1.20.0"; sha256="0rh42d2wskcmwx81266gb9npgl2gcfxsslz2drd74yvr19vc9wg2"; depends=[affy Biobase]; };
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RedeR = derive2 { name="RedeR"; version="1.22.0"; sha256="0si80xqv3sgyjflrc4h8sq4babcd5pqr2h87a3vbmiry9daw6q2d"; depends=[igraph pvclust RCurl XML]; };
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RefNet = derive2 { name="RefNet"; version="1.10.1"; sha256="0ssb5lhzqwgn9zahhnyk3cqbqdk0qv46819iclz2zd3na6qpkg27"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; };
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RefPlus = derive2 { name="RefPlus"; version="1.44.0"; sha256="0zai3s27xlqjjwvz4da5mq67yll4a4l8a6jyps6m9f6dw1q2c5jl"; depends=[affy affyPLM Biobase preprocessCore]; };
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Repitools = derive2 { name="Repitools"; version="1.20.0"; sha256="05y2y7v768mir3r8c53w1qm9dhpy46fqbyhwakpjaiha1h8y6gxn"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; };
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ReportingTools = derive2 { name="ReportingTools"; version="2.14.0"; sha256="02q90prc115wbhk1851gsbv4xxd39xzbav9c9vck6qirbiangj5g"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; };
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Rgraphviz = derive2 { name="Rgraphviz"; version="2.18.0"; sha256="08brd7cmhxmbv43cf3pq0282fwyxc6hmx3y5dr7filzdb0qs8ja1"; depends=[graph]; };
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Rhtslib = derive2 { name="Rhtslib"; version="1.6.0"; sha256="1vk3ng61dhi3pbia1lp3gl3mlr3i1vb2lkq83qb53i9dzz128wh9"; depends=[zlibbioc]; };
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RiboProfiling = derive2 { name="RiboProfiling"; version="1.4.1"; sha256="19ndx2xdvj57r9wsz9ym3ywilib18cbpm4dswzrhdgjliw73kdjs"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; };
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Ringo = derive2 { name="Ringo"; version="1.38.0"; sha256="0c6h7lm6aqs7y57w2h36g4yr7wl2h9yrp60vv4128bdxgjqkv539"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; };
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Risa = derive2 { name="Risa"; version="1.16.0"; sha256="1iix9nrn0p7vvv138qxdnz9aqcicrd97hn1sfgm8n46dcn5ghmqy"; depends=[affy Biobase biocViews Rcpp xcms]; };
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Rmagpie = derive2 { name="Rmagpie"; version="1.30.0"; sha256="00bv93d861finxi38pqbrypjiz1hsazzjrbihy4q5sfy2162xpa5"; depends=[Biobase e1071 kernlab pamr]; };
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RmiR = derive2 { name="RmiR"; version="1.30.0"; sha256="0j0h6ififbdbc4k99k0fq5pvaig4dm0gndzbglqrl2xl77ykhpyr"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; };
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RnBeads = derive2 { name="RnBeads"; version="1.6.1"; sha256="1kjxxbhm9f519sbldmklp7nizf71wq6vbnhkad23y4j05ywlywmf"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer S4Vectors]; };
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RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.6.0"; sha256="1lyvhkli4xdhshh53dg2xl9cyy11913zm3pnfpbfha1b0cl5w7d6"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; };
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Rnits = derive2 { name="Rnits"; version="1.8.0"; sha256="0dna0gv4f4ws0xwx5ikaqvn9x01yzln1ihrdc5886bnwmlrxwqm7"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
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Roleswitch = derive2 { name="Roleswitch"; version="1.12.0"; sha256="13db86wfzw6bixjxk77d0syzazvy11x5khij2yda5py45cc6q042"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
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RpsiXML = derive2 { name="RpsiXML"; version="2.16.0"; sha256="14wlw9cmjr6iv6zydw4l7bfg9dicgb3zk7qfnrlqd9060kgqbfv2"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
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Rqc = derive2 { name="Rqc"; version="1.8.0"; sha256="1h3fqmkifr2bdcql161dssfbabkn4x5wg753wbg1j9lfsgn2zp96"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
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Rsamtools = derive2 { name="Rsamtools"; version="1.26.2"; sha256="118nsajgghi4cy3h0wi7777kc70a5j1fdyxv5n1dy01glix2z4qk"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
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Rsubread = derive2 { name="Rsubread"; version="1.24.2"; sha256="14v255j1n01gl1s0d13rag6m4nmpc2gg636hy4mn505bnvqp147y"; depends=[]; };
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Rtreemix = derive2 { name="Rtreemix"; version="1.36.0"; sha256="18a6pf517an68n5bxxrnql2qzm5jmmi0k3zaqg3n6zkmfz6izm48"; depends=[Biobase graph Hmisc]; };
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S4Vectors = derive2 { name="S4Vectors"; version="0.12.2"; sha256="0syx0qgipx97zsp3b8afhzamsr30835a2a99yb9wnq7b50g3v3p1"; depends=[BiocGenerics]; };
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SAGx = derive2 { name="SAGx"; version="1.48.0"; sha256="1sy7r5nnp9lq8r9217zfy8g5vzjcsh4raiwd06dk4qgshqwd091b"; depends=[Biobase multtest]; };
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SANTA = derive2 { name="SANTA"; version="2.12.0"; sha256="19xrjv25y780jlgl0fw0hlvwdnnjkr6ql769y86qnmj5ipqmgici"; depends=[igraph Matrix snow]; };
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SBMLR = derive2 { name="SBMLR"; version="1.70.0"; sha256="0g1wzx18sac73mwn1v1jgvdx8kbbc2ijrc8nq45h64hg00w66zys"; depends=[deSolve XML]; };
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SC3 = derive2 { name="SC3"; version="1.3.18"; sha256="1nqrzwgb55353q9gf4lky55sda6vggq5rfnmfs0g66vld6ghs6ag"; depends=[cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov scater shiny WriteXLS]; };
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SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.16.0"; sha256="04pfbmhnn6y842i7hd210qqqdkk1q2x25y34x6bnxvfvs5adg4nm"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
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SELEX = derive2 { name="SELEX"; version="1.6.0"; sha256="0j8jqfxynh22r1b4cb2l0chq93i8r5izf40bfbmyxcyw56hbp9y7"; depends=[Biostrings rJava]; };
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SEPA = derive2 { name="SEPA"; version="1.4.0"; sha256="0qrlirs7y6b4f86n9xzk29c1mpq32rjzmz22rl3dgqfanm0rhazy"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; };
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SGSeq = derive2 { name="SGSeq"; version="1.8.1"; sha256="13rv6dwf7bmd2asd16kg3cvpw3zfbnx4z8xh3sficzr409r4xj5v"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; };
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SICtools = derive2 { name="SICtools"; version="1.4.0"; sha256="14crfai0zy3yc74g755hvxpm0r942k6a38sgx399bybxwnlbqdd7"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; };
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SIM = derive2 { name="SIM"; version="1.44.0"; sha256="1f37dc843ir2jy9998gmniydc8ypqnmp68f975vkyqicbzfplh83"; depends=[globaltest quantreg quantsmooth]; };
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SIMAT = derive2 { name="SIMAT"; version="1.6.1"; sha256="14masfdaqbsfwi1yh9cqb2cs4b47a3sy159iig5ahlbc4x9mkmvq"; depends=[ggplot2 mzR Rcpp reshape2]; };
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SIMLR = derive2 { name="SIMLR"; version="1.0.1"; sha256="1r5yzjmjgv1lvw4b4863zs6h54614shp2bvic439wdaqr8pcq6dk"; depends=[Matrix]; };
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SISPA = derive2 { name="SISPA"; version="1.4.0"; sha256="1rfk3gyz5h1qz333cjim6952h01x15gl067jil6i4kislkpjlza7"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; };
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SLGI = derive2 { name="SLGI"; version="1.34.0"; sha256="0080vwdh43i61xsii3kr517z24606dg1l412q0pg4z68p57cqrg1"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; };
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SLqPCR = derive2 { name="SLqPCR"; version="1.40.0"; sha256="1zqdmq461mcz0ic9m5l4y12jmp5vf4b6w19icj2l18s9ndb2b12v"; depends=[]; };
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SMAP = derive2 { name="SMAP"; version="1.38.0"; sha256="0qpllwng8xgx6vfg8a6vrz2353b45xhbmv8vqx81z4b0jh1knbav"; depends=[]; };
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SMITE = derive2 { name="SMITE"; version="1.2.0"; sha256="1xqidcmr1p1nmmrhpdhbclxzfqcs33l1q8zpqs2qcbpx4svvjafb"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; };
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SNAGEE = derive2 { name="SNAGEE"; version="1.14.0"; sha256="1qpvqxwh14iqw5w9sx366ri9h5q3fbq2cvk0brhsq9hslccb480m"; depends=[SNAGEEdata]; };
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SNPRelate = derive2 { name="SNPRelate"; version="1.8.0"; sha256="07ml3kwpz272q40k4qynj5farwr17lwarwclsd642s2vg0xandd6"; depends=[gdsfmt]; };
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SNPchip = derive2 { name="SNPchip"; version="2.20.0"; sha256="036k1la7ji9fgni0mgrz3bivkh2r66xzqd3q0hys4hr6bg7xrywi"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; };
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SNPediaR = derive2 { name="SNPediaR"; version="1.0.0"; sha256="0cbw37jdmv9bvaclvnj3wyn4r05bbyab6gr0q5gapkzz7zvg8rj1"; depends=[jsonlite RCurl]; };
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SNPhood = derive2 { name="SNPhood"; version="1.4.1"; sha256="17miqrv6v0n6nlrn8rkblqzsf6vk5gspmban8drbjc0j13fjpmli"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
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SPEM = derive2 { name="SPEM"; version="1.14.0"; sha256="1pik7sd9gg9hq3yapvc046cjcm6braq2q6nfbc2fv360xsm43ahm"; depends=[Biobase Rsolnp]; };
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SPIA = derive2 { name="SPIA"; version="2.26.0"; sha256="0z5d3bdzixams0nv6z3yr6c8cgymv2wzbnkvg6r1xfi86mrqh0s0"; depends=[KEGGgraph]; };
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SPLINTER = derive2 { name="SPLINTER"; version="1.0.0"; sha256="0w8082mnb8zkbkrp09hcwvn7y63y9p26slx2hvjxh07zw2h2k73c"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges plyr S4Vectors seqLogo]; };
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SQUADD = derive2 { name="SQUADD"; version="1.24.0"; sha256="1l7rkmqw571wjwcr2wh3d2q652jpcba2hgf8nfbhc1h7da0yz5n5"; depends=[RColorBrewer]; };
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SRAdb = derive2 { name="SRAdb"; version="1.32.0"; sha256="168ijnvv3yhh9j5wbp5m4bqns63dhnmqm108pjdfwxjm2ya0dvra"; depends=[GEOquery graph RCurl RSQLite]; };
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SRGnet = derive2 { name="SRGnet"; version="1.0.0"; sha256="02y7w06j6qjvf49k8a4k03djahv934h4npj18hj10a4941d8ixfn"; depends=[DMwR EBcoexpress gbm gRain igraph limma MASS matrixStats pvclust RedeR]; };
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SSPA = derive2 { name="SSPA"; version="2.14.0"; sha256="0l95hws5c4gb8c1jsqpnwc3010gx9l8yi132svxa6wbms73qpfy2"; depends=[lattice limma qvalue]; };
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STAN = derive2 { name="STAN"; version="2.2.0"; sha256="0z5b22rqyk15gpqhlafq15gaa5h9cs0v1pm64j12qww41nrd6sz0"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; };
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STATegRa = derive2 { name="STATegRa"; version="1.8.0"; sha256="1qn3gdz23a23i1mm006z1s58j8ky5ik3zy67bc6ji6yv0pqcdmah"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
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STRINGdb = derive2 { name="STRINGdb"; version="1.14.0"; sha256="17mliwk1cd67bd485j5g8wp1ch8z4mvap44ikvxa4pv51jqrqvh0"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
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SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.0.0"; sha256="17f0a3h82yh9lsanq17prkrbs094bc4kgj9vy6hjk0ivlh0mb0wm"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; };
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SVM2CRM = derive2 { name="SVM2CRM"; version="1.6.0"; sha256="02k95x5ifdbnr2jwkppq94q5xbpfxvix8dnqfnjjzxni2qqgwzs3"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; };
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SWATH2stats = derive2 { name="SWATH2stats"; version="1.4.1"; sha256="0jnryq56yjnp7blp9hiw45w03k7g7bb08frxqv98a2zz93vqrcxd"; depends=[data_table ggplot2 reshape2]; };
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SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.28.0"; sha256="08yyvidwzn3ijj0p339nbd94ix4f96141sa1y175cv13rfpcapdw"; depends=[]; };
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ScISI = derive2 { name="ScISI"; version="1.46.0"; sha256="0hrm72dkn8xn5ipw7q1vixybxhc5w13d1g42k6g7ds94mgm4y7lk"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; };
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SemDist = derive2 { name="SemDist"; version="1.8.0"; sha256="1a7f3md15a5fb9s483wz2mhhi99jhmbix9vwa44rnkd3c6xahvyz"; depends=[annotate AnnotationDbi GO_db]; };
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SeqArray = derive2 { name="SeqArray"; version="1.14.1"; sha256="05s7iq3pbn3cpfqr5jvk4fxmvqcgray1d0yvk1j2d2fs6jmdsj97"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
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SeqGSEA = derive2 { name="SeqGSEA"; version="1.14.0"; sha256="03g7pzhw7xz7iwac9d8lw1z0d5hxz982b65ydjwnfq87psssklx4"; depends=[Biobase biomaRt DESeq doParallel]; };
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SeqVarTools = derive2 { name="SeqVarTools"; version="1.12.0"; sha256="1y9bdprh3iw8m5mcys5w6cvi4msh5m2291mnh81gchypk4wmpcgi"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges logistf S4Vectors SeqArray stringr VariantAnnotation]; };
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ShortRead = derive2 { name="ShortRead"; version="1.32.1"; sha256="1m7lbfxs7xwcy9xs76zy5rky2mb96anvh457xfw60lh3kygwfpxc"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
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SigCheck = derive2 { name="SigCheck"; version="2.6.0"; sha256="0ddq2q47g6anz3y3p25p5vp2nkr4ib3slyd1z5q86gaa6rja9zsv"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
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SigFuge = derive2 { name="SigFuge"; version="1.12.0"; sha256="0cqdzpim9la30fdcn2kk1jb8yj27hx22szlmj86jadv21wrjspwz"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
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SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.12.0"; sha256="02rcz4h0agqm4xp5p6w3i7ssyjj9l52hg9rzp2pig854nmbyyhay"; depends=[Biobase limma mclust Ringo]; };
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SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.10.0"; sha256="14y7ija2c1qby4gb4p9jm1dgn6d1175nlm1cwpvisi8nrri3bfzq"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
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SpacePAC = derive2 { name="SpacePAC"; version="1.12.0"; sha256="0xawxv7a59b9w4ggn2ifgwbmxslwp9f4cvkx1mafllj8m9wg8m2q"; depends=[iPAC]; };
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SpeCond = derive2 { name="SpeCond"; version="1.28.0"; sha256="1paj6xpab9gv77fa5p6ndddsc0w9wqd59xkyvaarwka4c74i3983"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
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SpidermiR = derive2 { name="SpidermiR"; version="1.4.8"; sha256="1nqakgccxz5112sfj89jw5mc530kxw5lspsrnhma3sb5ivv89291"; depends=[AnnotationDbi ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; };
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SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.14.0"; sha256="00cgvkh5g16i2kbdlhafpjwfszcki7g5ipl7lpkrvrzk3f9701h7"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
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StarBioTrek = derive2 { name="StarBioTrek"; version="1.0.3"; sha256="0al6l12msrgh6hv73xhqvsqnm1yyvkv34g23dazwf52lxm3qvlkn"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; };
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Starr = derive2 { name="Starr"; version="1.30.0"; sha256="1wq7166k8incddgivrvijyzq7xd65bwl7rlqxc4c34g7fwzmh0hc"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; };
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Streamer = derive2 { name="Streamer"; version="1.20.0"; sha256="00vi6wh4gq6x5yrvqs2gxmy0nbcjdhiwxzi1v2v99ax11p69h37m"; depends=[BiocGenerics graph RBGL]; };
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SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.4.0"; sha256="1kbj8sg2ik9f8d6g95wz0py62jldg01qy5rsdpg1cxw95nf7dzi3"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; };
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Sushi = derive2 { name="Sushi"; version="1.12.0"; sha256="05cl27h76kvxvsbc70gkma3rv9xnavg9iqm7wncardc2b8jprsk1"; depends=[biomaRt zoo]; };
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SwathXtend = derive2 { name="SwathXtend"; version="1.2.0"; sha256="0r7cmiqmp8pkzzr3hbp8k2wk4gzikxp46bxz90dbxaxhasl0b8i0"; depends=[e1071 lattice openxlsx VennDiagram]; };
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SwimR = derive2 { name="SwimR"; version="1.12.0"; sha256="1mmj7sf1j5414gq5ng0s74xkx0cp93l7js0whnw5bvpp43d2f2iv"; depends=[gplots heatmap_plus R2HTML signal]; };
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TCC = derive2 { name="TCC"; version="1.14.0"; sha256="09kyj1wfpkc0iphd5iml3nh2mxr3dkzs52bbqsn259pc82p8bhxb"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
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TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.2.10"; sha256="0cmv0ca3y3nc15na55j4684c2q2g2z64cpfnlxkxkgmd4djkxxwv"; depends=[affy Biobase biomaRt c3net circlize clusterProfiler ComplexHeatmap ConsensusClusterPlus data_table dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicRanges ggplot2 ggrepel ggthemes gplots gridExtra httr igraph IRanges jsonlite knitr limma matlab minet parmigene pathview plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment supraHex survival survminer tibble XML xml2 xtable]; };
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TDARACNE = derive2 { name="TDARACNE"; version="1.24.0"; sha256="06zvmrdg1rjns750w6mlx817r9fn1nkb75qd4qhcvyz6iagpdh54"; depends=[Biobase GenKern Rgraphviz]; };
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TEQC = derive2 { name="TEQC"; version="3.14.0"; sha256="0a85r0skfjqmqs25lgarghzlq3fqp6gcyi5dzm7s3kn0kin0y8cf"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; };
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TFBSTools = derive2 { name="TFBSTools"; version="1.12.2"; sha256="0r3rgxprc61gmvc636bybw1hqf8li2h52ch54c4jp3ach0bmyjcf"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; };
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TIN = derive2 { name="TIN"; version="1.6.0"; sha256="18y6786wdpq9q4cvxqw0fs01hckgfhqhglpz8sb1hh044i6i00n0"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; };
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|
TPP = derive2 { name="TPP"; version="3.0.3"; sha256="1l0qyjwqcn5hj1820pmxfrfb0c0i226jdpbamx4kmszy5rc3b5yv"; depends=[Biobase doParallel dplyr foreach ggplot2 gridExtra knitr limma magrittr MASS nls2 openxlsx plyr RColorBrewer RCurl reshape2 rmarkdown sme tidyr VennDiagram VGAM]; };
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|
TRONCO = derive2 { name="TRONCO"; version="2.6.1"; sha256="1hwyac9jrivcl4h4k5fv54ywlf2aicd4hkr44v0mz5wgbdy1glgg"; depends=[bnlearn cgdsr circlize doParallel foreach gRapHD gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; };
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|
TSCAN = derive2 { name="TSCAN"; version="1.12.0"; sha256="0zcmm7rwhc85fb5b271mdlynplsh0qdbyaw6h6fnwl8w1rdxfa6d"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; };
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|
TSSi = derive2 { name="TSSi"; version="1.20.0"; sha256="0f7xpd4lmv13297klvrskmiwszxl0i980vvg8ba5k9kd60qjk811"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; };
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|
TVTB = derive2 { name="TVTB"; version="1.0.2"; sha256="1v3vcyh8sqv7bn06zzndppdpb8vvwm6jgsv0xz9yfx2lnasgbw3v"; depends=[BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges ggplot2 IRanges reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; };
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|
TarSeqQC = derive2 { name="TarSeqQC"; version="1.4.1"; sha256="1x57wd2cdfw1qrsqqm6v4flzwzkq1rkq58k214nqmi602sv66nlf"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; };
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|
TargetScore = derive2 { name="TargetScore"; version="1.12.0"; sha256="0mj25y82nvlk5sk9d2dh0p96i2bzrh0xl3cjsyxz0r7n2vyzlrl2"; depends=[Matrix pracma]; };
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|
TargetSearch = derive2 { name="TargetSearch"; version="1.30.0"; sha256="1z7sf0qmq3fcpf9h569f4qd4647p1rl4372w9ch8ykyjc8md7gs0"; depends=[ncdf4]; };
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|
TitanCNA = derive2 { name="TitanCNA"; version="1.12.0"; sha256="1bi6gx9k3f13zjq1pp79ixzalvql5bjlmb8fb5schghb99yx82m5"; depends=[foreach GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
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|
ToPASeq = derive2 { name="ToPASeq"; version="1.8.0"; sha256="1b65f3jak7yqlfwwzcld41s40x0p1cfyc2lklvc9ngz8g12hql8z"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz SummarizedExperiment TeachingDemos]; };
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|
TransView = derive2 { name="TransView"; version="1.18.0"; sha256="0hnk5msxpb8734djy07cgkgcf4wkkfcdcvg14a44drxdiahsijyk"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; };
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|
TurboNorm = derive2 { name="TurboNorm"; version="1.22.0"; sha256="06bs841mfspzsjhh61p25apwmn0qnakbxgj1l142i9bv3z7v69cc"; depends=[affy convert lattice limma marray]; };
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|
TypeInfo = derive2 { name="TypeInfo"; version="1.40.0"; sha256="108q2bxmqf4mshc5ixbf1v55099lzsprwii5qs0y9y2n8x5ra0h2"; depends=[]; };
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|
UNDO = derive2 { name="UNDO"; version="1.16.0"; sha256="0pmdb7gkf7g2b45j5hiksppn75ja3r2nm71qr4a2841diz93fsri"; depends=[Biobase BiocGenerics boot MASS nnls]; };
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|
UniProt_ws = derive2 { name="UniProt.ws"; version="2.14.0"; sha256="10m7qzcvhqvqskhrnxbbk2kx4fpq8dn9k2p8l665ds65ixv8xn9x"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
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|
Uniquorn = derive2 { name="Uniquorn"; version="1.2.0"; sha256="19pcbl37khg4m7h4amzzc28xpm5izg8nn998b42pjvibxg6x14hb"; depends=[DBI R_utils RSQLite stringr WriteXLS]; };
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|
VanillaICE = derive2 { name="VanillaICE"; version="1.36.0"; sha256="00nf5zxjv5409qj79jh1mhidsgkxjk5piysadv2ak8xwpj9zznws"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
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VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.20.3"; sha256="10v8apgfw57nd4dxmdxdrijxpw135jpp2p8wrk3wjpb3hhfjp1qj"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
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VariantFiltering = derive2 { name="VariantFiltering"; version="1.10.1"; sha256="0dy97x77v5ray8d5iw5brs15h4r9l6kizqvziccc47jxxsxl103i"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny SummarizedExperiment VariantAnnotation XVector]; };
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VariantTools = derive2 { name="VariantTools"; version="1.16.0"; sha256="13i481iiv3vi1m1lwi2s1vjaaplb4y1l7blmyvpqbpa87ync5crl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
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|
Vega = derive2 { name="Vega"; version="1.22.0"; sha256="11a8fz2fb2zyn6fgfa9hs5i4hsswp1hdxhahm41f4spn7acglmj7"; depends=[]; };
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|
VegaMC = derive2 { name="VegaMC"; version="3.12.0"; sha256="1swjak8yg33ykrfa52jiq7v3rcgwzf1w664j6wifi5bcflgbjhg1"; depends=[Biobase biomaRt genoset]; };
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|
XBSeq = derive2 { name="XBSeq"; version="1.4.0"; sha256="0f72qyhs8rsa5d4xbpgqd7lzxmgxcvk5dwqihfw714vg8mis7p8y"; depends=[Biobase Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; };
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|
XDE = derive2 { name="XDE"; version="2.20.0"; sha256="11phzwfpyc4dfhhgbfn54ybz71jl2z5wyysvfv34d63lv00jj3yp"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; };
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|
XVector = derive2 { name="XVector"; version="0.14.1"; sha256="1j14ip4c260kdp3zcmgfa2v8ky88csa0gfdg6a1xsb64s03hdbm6"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
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|
YAPSA = derive2 { name="YAPSA"; version="1.0.0"; sha256="104ij0pwc8bfys8by0ha99fhjgr85n9havzcsakawna3vrkj2s3b"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; };
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|
a4 = derive2 { name="a4"; version="1.22.0"; sha256="12c6y89nr4cck4fsx85bnsklpjic2fkyq550xjfjimy7a2jyx9pb"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
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|
a4Base = derive2 { name="a4Base"; version="1.22.0"; sha256="0w1p7ggj9q33filrkgzqkdah6pb81d6lis3p0l4mmy254kgcc61s"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; };
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|
a4Classif = derive2 { name="a4Classif"; version="1.22.0"; sha256="01c0gl0161psm8pbwwj7ny2zfgj7f1h9crzsj2hwl6240p771a51"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; };
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|
a4Core = derive2 { name="a4Core"; version="1.22.0"; sha256="19wb5h9w7zw33hwacnj1y2ylg3ksh1w4vg0mhpgnmrj79zn26wqz"; depends=[Biobase glmnet]; };
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|
a4Preproc = derive2 { name="a4Preproc"; version="1.22.0"; sha256="1wxf2yp52y63mr3jdsk7x1ah2xm39gwj0sz3fmp42bb1nrga57kh"; depends=[AnnotationDbi]; };
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|
a4Reporting = derive2 { name="a4Reporting"; version="1.22.0"; sha256="0s57kfn9ca75cqscm6lhs2hw9jxydbcyvj9fwf93ygm731q47lrq"; depends=[annaffy xtable]; };
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|
aCGH = derive2 { name="aCGH"; version="1.52.0"; sha256="0spz1y4vxi262h6dmrjdimwa58vsksys0mww80lgcqnggc3inzy2"; depends=[Biobase cluster multtest survival]; };
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|
acde = derive2 { name="acde"; version="1.4.0"; sha256="1rabc0d7fnjw52i6qa4r27ch95jal7kyxmsn1iqfy8mcy8w0dqi4"; depends=[boot]; };
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|
adSplit = derive2 { name="adSplit"; version="1.44.0"; sha256="0hk5wzssmfaz4vc4hm9xb3j3y285pvcpavcsvas6z68143j39cws"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; };
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|
affxparser = derive2 { name="affxparser"; version="1.46.0"; sha256="0byfdrrsd3nbs4qdnxcyzb0xd244nnbs5y0h8h6km3fnc2cibghx"; depends=[]; };
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affy = derive2 { name="affy"; version="1.52.0"; sha256="1snq71ligf0wvaxa6zfrl13ydw0zfhspmhdyfk8q3ba3np4cz344"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; };
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|
affyContam = derive2 { name="affyContam"; version="1.32.0"; sha256="0b3bmqnrk9mzl8ap7rabfq9mlfqi9x80721qbc99hycxywdb9cfj"; depends=[affy affydata Biobase]; };
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|
affyILM = derive2 { name="affyILM"; version="1.26.0"; sha256="19iw1aaqw7a9snhyg00ldj5h2j9gvb04wjl56ikvxfa83i1w2w2d"; depends=[affxparser affy Biobase gcrma]; };
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affyPLM = derive2 { name="affyPLM"; version="1.50.0"; sha256="02kqhjiffq52gsyaz31yz62chs2kh314ivqhwcpkr7pixhsdzhiw"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; };
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affyPara = derive2 { name="affyPara"; version="1.34.0"; sha256="0f7yrgij5mvwp66hc04lnkp628iva4wb9xs54m573hmvjdmqcjxv"; depends=[affy affyio aplpack snow vsn]; };
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affyQCReport = derive2 { name="affyQCReport"; version="1.52.0"; sha256="0sr24zaav5mqs47mv956m6qn7yjgldqmcjq3pqahb5bfbi6j3gmc"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; };
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|
affycomp = derive2 { name="affycomp"; version="1.50.0"; sha256="0ar8pv1k0ajx9l53cb0izarfap7wfji6rbjzwhkjzdijkr1ax3gh"; depends=[Biobase]; };
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|
affycoretools = derive2 { name="affycoretools"; version="1.46.5"; sha256="0c1wpqwqlcdi0sa6dbxkmscd21wni1vrnj7wmxzbf37mq6wcggpp"; depends=[affy AnnotationDbi Biobase BiocGenerics edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; };
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|
affyio = derive2 { name="affyio"; version="1.44.0"; sha256="1svsl4mpk06xm505pap913x69ywks99262krag8y4ygpllj7dfyy"; depends=[zlibbioc]; };
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|
affylmGUI = derive2 { name="affylmGUI"; version="1.48.0"; sha256="1zd7644p3zfw1dlgv1f7d53nml2l6bxmlaa96yazd4n37bvx1k4b"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
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|
affypdnn = derive2 { name="affypdnn"; version="1.48.0"; sha256="1fk5mvcg3w3p20mrwac972sxd1m1xza6dzd4kc9m5yzkjw7hp5p4"; depends=[affy]; };
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|
agilp = derive2 { name="agilp"; version="3.6.0"; sha256="00fmn774rzp291fkkfncp1pg0ryg4203pnqhpqlgp58kw7dj1fmd"; depends=[]; };
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alpine = derive2 { name="alpine"; version="1.0.0"; sha256="0gqqk0hv38f1jmlf1n78kphb2p9bsax9lv0mmd5ph5lsi0jdip7j"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; };
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|
alsace = derive2 { name="alsace"; version="1.10.0"; sha256="1qikhcxs24ycap2f2wvkm27fw7r7mlzxzz18am13371igbc8rl9d"; depends=[ALS ptw]; };
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|
altcdfenvs = derive2 { name="altcdfenvs"; version="2.36.0"; sha256="1z7c2kb5c8d28i110mf6vqnhzijhyz7icjrgjab0jg1jbfm466ad"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; };
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|
ampliQueso = derive2 { name="ampliQueso"; version="1.12.0"; sha256="0p0ydmz185hbzvc9rcqk45hqs3288k4zd36x0a6kk6hyjmjx0z05"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; };
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|
anamiR = derive2 { name="anamiR"; version="1.0.1"; sha256="0rw4dg54vqmwl76917wgw2fz71zghg0jp6gal32vm3752hg92l3s"; depends=[agricolae DBI DESeq2 gplots limma lumi RMySQL SummarizedExperiment]; };
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|
annaffy = derive2 { name="annaffy"; version="1.46.0"; sha256="0x0d9hhw7n8ay3d2kncl10b8q7ajb4mv8f6dpzg985cf6irm9pgb"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; };
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|
annmap = derive2 { name="annmap"; version="1.16.0"; sha256="1qfm2r6w10nmixzwrk52mwkldgc6g2fqzlppd84wwf6mlvxsmb4j"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; };
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|
annotate = derive2 { name="annotate"; version="1.52.1"; sha256="0yymz8qxgnbybvfhqrgkd1hh9dhwxdii1yxkhr1zicjgb35xixxb"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; };
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|
annotationTools = derive2 { name="annotationTools"; version="1.48.0"; sha256="095mrvw3vjr068zm04z8fdidjg3h8iijdvhdfizkfdp36a6lm3kk"; depends=[Biobase]; };
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|
annotatr = derive2 { name="annotatr"; version="1.0.3"; sha256="0m4s98sdj5i6wifnf05hb4hjr1qqrpkwjrvc13iq151v2zmzhfbn"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges org_Dm_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db readr regioneR reshape2 rtracklayer S4Vectors TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Dmelanogaster_UCSC_dm6_ensGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene TxDb_Rnorvegicus_UCSC_rn5_refGene TxDb_Rnorvegicus_UCSC_rn6_refGene]; };
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anota = derive2 { name="anota"; version="1.22.0"; sha256="0qknx73nx2v9y2d2wc57i07varii1y8cr0dvnjcvwr0bnnbi38za"; depends=[multtest qvalue]; };
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|
antiProfiles = derive2 { name="antiProfiles"; version="1.14.0"; sha256="1frd43dcyaad6rrm8xdhf8vc4fwqyz6kyjlgvq7bxgfkdl8j0si0"; depends=[locfit matrixStats]; };
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|
apComplex = derive2 { name="apComplex"; version="2.40.0"; sha256="09sd7jx0as0bqgga0ammqghkx8cff4rl8vs1nzhfpv5g00kzdqvh"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; };
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|
aroma_light = derive2 { name="aroma.light"; version="3.4.0"; sha256="1cgad3xydmglfkqjqqxvxwxnq65m517hp1jwpw0lsfc13ip13f27"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
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|
arrayMvout = derive2 { name="arrayMvout"; version="1.32.0"; sha256="1chrnjnl9yx3xjf1hk36x2xmh93hg1dnhifj8nh9c1hwgnwkkaf1"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; };
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arrayQuality = derive2 { name="arrayQuality"; version="1.52.0"; sha256="0nrw7wzs73y4zcvdk96mqprpnzzcn44ys6i4cbk3hvmrqwfgrhj0"; depends=[gridBase hexbin limma marray RColorBrewer]; };
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arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.30.0"; sha256="0vdvf8wb8dcm2zygqn34l24d6liw3v1qc2nx9sl6wb3zyi4ly60s"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
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attract = derive2 { name="attract"; version="1.26.0"; sha256="0wmkydqkrpbn460wa1xsgjic9jfd0j764nn7f7fh5f5iwif1g2gj"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; };
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|
bacon = derive2 { name="bacon"; version="1.2.0"; sha256="1h38yh9d6mc4jbmhnq342ba8xndfmjr9mpf5gnq7hzb7ai2gmspy"; depends=[BiocParallel ellipse ggplot2]; };
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|
ballgown = derive2 { name="ballgown"; version="2.6.0"; sha256="02f547y31a133jxqwlq0qianjj2lrlr9kn63x9i91vsyf22mb1ya"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
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bamsignals = derive2 { name="bamsignals"; version="1.6.0"; sha256="1k42gvk5mgq4la1fp0in3an2zfdz69h6522jsqhmk0f6i75kg4mb"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
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baySeq = derive2 { name="baySeq"; version="2.8.0"; sha256="136ll90xapsv1p6pns81kk4krgvbhsamhrych9gfb34r8p6pyplr"; depends=[abind edgeR GenomicRanges]; };
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beadarray = derive2 { name="beadarray"; version="2.24.0"; sha256="1yjpkzknvznvc3qacdf6ma1jfxkw5basir3h0ipvfm6jnd07l1g3"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
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beadarraySNP = derive2 { name="beadarraySNP"; version="1.40.0"; sha256="1afy96fx6600cw92my65zds9w99y4yxyzbssr06ycfrzz3sd6xrb"; depends=[Biobase quantsmooth]; };
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|
betr = derive2 { name="betr"; version="1.32.0"; sha256="093lynqrfbb6iai3s2wvwmjjx8p43nb32mxghxf3ymchaq0hnbgw"; depends=[Biobase limma mvtnorm]; };
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bgafun = derive2 { name="bgafun"; version="1.36.0"; sha256="1kjrg0c686cj7ykvas7wknc3lvdlj4jvfybfwqxwnnzxrjqn350l"; depends=[ade4 made4 seqinr]; };
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bgx = derive2 { name="bgx"; version="1.40.0"; sha256="1lzcgfjqgvd0a8r7qi8hyb1l99qw7d68bqzy97sqaaqnfb773qr4"; depends=[affy Biobase gcrma]; };
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bigmelon = derive2 { name="bigmelon"; version="1.0.0"; sha256="1wj8x195gaqq3h0y62ilxsrh0xz17d0vfnbcbblg392a4c41p4j2"; depends=[Biobase gdsfmt methylumi minfi wateRmelon]; };
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bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.20.0"; sha256="0zd43xyx433s7aghs3x4963hf2pcr6q6qyx99bxrbkbdws5m9zql"; depends=[bigmemory]; };
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bioCancer = derive2 { name="bioCancer"; version="1.2.0"; sha256="1szkrk81nyxfj8agd010495l8c3iirnixmwly38lz1f16w2p494l"; depends=[AlgDesign AnnotationFuncs Biobase broom car cgdsr clusterProfiler covr curl data_tree DiagrammeR DOSE dplyr DT geNetClassifier ggdendro ggplot2 GPArotation gridExtra htmlwidgets jsonlite knitr lubridate magrittr markdown MASS org_Hs_eg_db plyr pryr psych RCurl reactome_db ReactomePA readr scales shiny shinyAce stringr tibble tidyr visNetwork wordcloud XML yaml]; };
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bioDist = derive2 { name="bioDist"; version="1.46.0"; sha256="1ark28jkh3zi0pc4a0xj9qmim38n9k919avx9ir35wxm81133g0a"; depends=[Biobase KernSmooth]; };
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|
bioassayR = derive2 { name="bioassayR"; version="1.12.1"; sha256="09sd6naqai7qiwinjwdh6fxgswcs7z9jfh5w93vg34m29i8sry36"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
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|
biobroom = derive2 { name="biobroom"; version="1.6.0"; sha256="1r2v43hpk0h6cnsaxxbks4c3c1jnakrpx693px2vg04r2gl9b9pc"; depends=[Biobase broom dplyr tidyr]; };
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|
biocGraph = derive2 { name="biocGraph"; version="1.36.0"; sha256="1sxhb713sn32kpjin5m0rg32b7gw75d5a6b4m9gqj0p7537phkjd"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
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|
biocViews = derive2 { name="biocViews"; version="1.42.0"; sha256="07rjk10b91pkriyq297w86199r2d3sfji3ggs9mq2gyalsa8y4b6"; depends=[Biobase graph RBGL RCurl RUnit XML]; };
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|
biomaRt = derive2 { name="biomaRt"; version="2.30.0"; sha256="1x0flcghq71784q2l02j0g4f9jkmyb14f6i307n6c59d6ji7h7x6"; depends=[AnnotationDbi RCurl XML]; };
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biomformat = derive2 { name="biomformat"; version="1.2.0"; sha256="1p768n1kw82bl2n1ifsdfvl7rxbxhgg6qg6f72nqn07x2s14rr6g"; depends=[jsonlite Matrix plyr rhdf5]; };
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|
biomvRCNS = derive2 { name="biomvRCNS"; version="1.14.0"; sha256="111mhlfmnyz2m0n1s6f72kyd37fbs73fdcwva06p8b3v21pq4zbx"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
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|
biosigner = derive2 { name="biosigner"; version="1.2.4"; sha256="0ckmmr9lsyvzarwpz49iwz2w31sjzlvp9pblaj5xkw7x2cj06i8l"; depends=[Biobase e1071 randomForest ropls]; };
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|
biosvd = derive2 { name="biosvd"; version="2.10.0"; sha256="1gd93p178hs9rhh1w1vgxygw997lk3asmmgajkk6mh7463z340hg"; depends=[Biobase BiocGenerics NMF]; };
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|
biovizBase = derive2 { name="biovizBase"; version="1.22.0"; sha256="0f3zwn0g0rc3ld8dd5sgpr14l9aff57j766h4grkiyazyyb46bnh"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
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|
birta = derive2 { name="birta"; version="1.18.0"; sha256="101bwd0miz377ahc1v7g0rzx1m8qzgy2wmpw57bqnpfn0xawxzg3"; depends=[Biobase limma MASS]; };
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|
birte = derive2 { name="birte"; version="1.10.0"; sha256="1kkj41d5w70kak00564zjycrcbr8vq3fxkg5f5j710b5shms91v2"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; };
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|
blima = derive2 { name="blima"; version="1.8.0"; sha256="181xqsmqq1g52dvkxx7b5myj9fd1ss15x853n617fsij8sbnbarb"; depends=[beadarray Biobase BiocGenerics]; };
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|
bridge = derive2 { name="bridge"; version="1.38.0"; sha256="1jfyg88i8yw6nz15sn3mhg5d7ms5xmimaca57bpj2y8yzzbbmg2k"; depends=[rama]; };
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|
bsseq = derive2 { name="bsseq"; version="1.10.0"; sha256="0akzqcpcfsldjxyn9znyzdfczkkjpxxf9hfqzjqd3yj4x1hgnf4j"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges limma locfit matrixStats permute R_utils S4Vectors scales SummarizedExperiment]; };
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|
bumphunter = derive2 { name="bumphunter"; version="1.14.0"; sha256="08r5bvxnx96rv34lww0ccn1qhy98kwsdlvyp2bq21bmwqgfm5m03"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
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|
caOmicsV = derive2 { name="caOmicsV"; version="1.4.0"; sha256="06zksrn6psfwfxqagf5ksqakqkpm32sls4vi8nvfpwkh69s1r7va"; depends=[bc3net igraph]; };
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|
canceR = derive2 { name="canceR"; version="1.6.0"; sha256="10cai1l21cjdj61rp0s6w1a03fn03dzgcz9snb76yrr24cynhrf8"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
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|
cancerclass = derive2 { name="cancerclass"; version="1.18.0"; sha256="1zff6wz0529gc22c9bfnwa95xxadyhfbxjvr1b51w4zgms2bicfr"; depends=[binom Biobase]; };
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|
casper = derive2 { name="casper"; version="2.8.0"; sha256="0ckqx8i7pgmjhznpw8pggc2f1147sd7vqhw2a4f0na9mv27l74iq"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
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|
categoryCompare = derive2 { name="categoryCompare"; version="1.18.0"; sha256="0ppis6agdpccjg8bwr91axy770v67al93pg50zmk1rvbfl25b9gz"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; };
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|
ccmap = derive2 { name="ccmap"; version="1.0.0"; sha256="1djajivpfz8cgdq5nnhyr48gvdq8igjqfkxbibw975y7ybsrc44z"; depends=[AnnotationDbi BiocInstaller ccdata data_table doParallel foreach xgboost]; };
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|
ccrepe = derive2 { name="ccrepe"; version="1.10.0"; sha256="14y97n28jqj78xscprgbnlwq4abf1vks3ipmp0w9y1yjj0jk0xl2"; depends=[infotheo]; };
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|
cellGrowth = derive2 { name="cellGrowth"; version="1.18.0"; sha256="1yxlcli3h35aw9nzffnpv4nby255bmlkrwcdh6rr7i04393qjpzc"; depends=[lattice locfit]; };
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|
cellHTS2 = derive2 { name="cellHTS2"; version="2.38.0"; sha256="117g37rvi92i21mg2ifxy9dxilvgf52nz3f51jdlcgf1w5zvm3n1"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; };
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|
cellTree = derive2 { name="cellTree"; version="1.4.0"; sha256="1aqjz3cwl34inm7bw9pspgpi15h81si8gki3015j1ib8r45n9wda"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; };
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|
cellity = derive2 { name="cellity"; version="1.2.0"; sha256="1lzrhqs1jq8khh3gmca381kcr6szmc17ng2jxpz025isbpc9b8y2"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; };
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|
cghMCR = derive2 { name="cghMCR"; version="1.32.0"; sha256="1d9vygzf4dinr4xwcz7091zlyk798ph99g27dywpkqr7yijgjz8m"; depends=[BiocGenerics CNTools DNAcopy limma]; };
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|
charm = derive2 { name="charm"; version="2.20.0"; sha256="14vf7jdi5hwk3rysm59kylzfajak0wqafipa8r02rij2h1354c3v"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; };
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|
chimera = derive2 { name="chimera"; version="1.16.0"; sha256="0j7nhardm70p2l4svdb1cyqwk3j2247q5ig7ya72az5bh3bmamb6"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; };
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|
chipenrich = derive2 { name="chipenrich"; version="1.12.1"; sha256="0vqhlljikhfb3byla05s0w95n0rfyww1rjp7g6zdsf09fy79pcw7"; depends=[chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv plyr rms S4Vectors stringr]; };
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|
chipseq = derive2 { name="chipseq"; version="1.24.0"; sha256="115ayp82rs99iaswrx45skw1i5iacgwzz5k8rzijbp5qic0554n0"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; };
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|
chopsticks = derive2 { name="chopsticks"; version="1.38.0"; sha256="1cxr419sdvy5s2whcs49hda3zy5fbgzjqgj9bb651qcwk6vc5n0h"; depends=[survival]; };
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|
chroGPS = derive2 { name="chroGPS"; version="1.22.0"; sha256="0kq1dgik5dkhqb1as9zpwzpyhbw16c766vyn5all4frh0mpdiy0z"; depends=[Biobase changepoint cluster DPpackage GenomicRanges ICSNP MASS]; };
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|
chromDraw = derive2 { name="chromDraw"; version="2.4.0"; sha256="0rzrcjzwqjb40l8yc25gscl6hnxwprrv738p46kmdh3a08ghxv5v"; depends=[GenomicRanges Rcpp]; };
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|
chromPlot = derive2 { name="chromPlot"; version="1.2.0"; sha256="06wg345hkkpaq0m620sqgnwvk11qfkhn5yr8nyv9cbdbihqvg0if"; depends=[biomaRt GenomicRanges]; };
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|
chromstaR = derive2 { name="chromstaR"; version="1.0.0"; sha256="1qyb07dsag64gspjk29nd3ppylzicsq7rnjafdfhs9pjqwv0vshf"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools S4Vectors]; };
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|
cisPath = derive2 { name="cisPath"; version="1.14.0"; sha256="108d1m3d07zblij9wsz2l6bw226bvwwl8w0gq3wdxjmgyjj48jzi"; depends=[]; };
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cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.12.0"; sha256="09bbqapri4vw9mdlch0hw6v49mxqbknrrj5q9ssyzhjhikz954sq"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; };
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|
cleaver = derive2 { name="cleaver"; version="1.12.0"; sha256="0dnl7ihxhl640k91div133rz9kxa43wkvfyxkyqv31winymk0fy4"; depends=[Biostrings IRanges S4Vectors]; };
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|
clippda = derive2 { name="clippda"; version="1.24.0"; sha256="0dqlr468awg4r1rnskzjj77c0amcq0nj1rh8j9s5ad6jvspyk1wk"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
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|
clipper = derive2 { name="clipper"; version="1.14.0"; sha256="1qrj1l7qdkq6s8k2zq5rfkwnag0f1ivhcjcnzyszkf8nzpxz019g"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
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|
clonotypeR = derive2 { name="clonotypeR"; version="1.12.0"; sha256="1j4s26l2k0msw8yza92348z8kpji0c9a1a83gjn7lazbs27arlnf"; depends=[]; };
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|
clst = derive2 { name="clst"; version="1.22.0"; sha256="1yilfyf6azwdc48rdvfanjl0anl275qc6p1f2agyf5nfrhacpaaz"; depends=[lattice ROC]; };
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|
clstutils = derive2 { name="clstutils"; version="1.22.0"; sha256="0wc7xv65dg2qi2778qlk49d3snx4ahv9km74jdysixwww2fqqqs4"; depends=[ape clst lattice rjson RSQLite]; };
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|
clustComp = derive2 { name="clustComp"; version="1.2.2"; sha256="0pmna9q3y607d04pqyi4vkl5r7hl41cywsplpkmkwmwp8y1v2zls"; depends=[sm]; };
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|
clusterExperiment = derive2 { name="clusterExperiment"; version="1.0.0"; sha256="0idg0iw7lb1iqzxwpilqh7njz2yv6783nzvmnxvdnx1vj7xihdky"; depends=[ape cluster dendextend howmany limma locfdr matrixStats NMF phylobase RColorBrewer SummarizedExperiment]; };
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|
clusterProfiler = derive2 { name="clusterProfiler"; version="3.2.14"; sha256="0nip67hzcwc1zary2abcki4cgz32ixxkv9b8apllvz5a26scn02r"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim IRanges magrittr plyr qvalue tidyr]; };
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|
clusterStab = derive2 { name="clusterStab"; version="1.46.0"; sha256="1h3j1qs6d5d4whmzljzjlg6favlb8r4nk2sm8sk5kjad37ywz3cm"; depends=[Biobase]; };
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|
cn_farms = derive2 { name="cn.farms"; version="1.22.0"; sha256="18q8v82i90sj2c19idv5czy8dvlr2qghdlj29nqn8rwh8i04ayz9"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
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|
cn_mops = derive2 { name="cn.mops"; version="1.20.1"; sha256="0wrf4k0a2zc6ymhlr6shncw4xdpfzwzfxig7ddrrwx4brrhn1c91"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
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cnvGSA = derive2 { name="cnvGSA"; version="1.18.0"; sha256="18i6g6hmky6r9c6vgs67kxq5vvyaldlghlbpv518awd0y135fx4x"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
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|
coGPS = derive2 { name="coGPS"; version="1.18.0"; sha256="0hcyha03gyh6zp1b24h2n9nx0vkzphh2d10nvss3ryaqj9305cxd"; depends=[]; };
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|
coMET = derive2 { name="coMET"; version="1.6.0"; sha256="0biiz7g893l12ibqdx16zagyk124yjz41mmb8gb283rhlibf6bpm"; depends=[biomaRt colortools corrplot GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; };
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|
coRNAi = derive2 { name="coRNAi"; version="1.24.0"; sha256="0qa7wrsz9m34dr7dm97cqwl2bzxn8zr0fkdqyr6x1jkixxfs76p1"; depends=[cellHTS2 gplots lattice limma locfit MASS]; };
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|
cobindR = derive2 { name="cobindR"; version="1.12.0"; sha256="1nygdg9bipj1nwv6i1dk3mmmba7jzmf2q4wmqwf9ivgjfaskqd19"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
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|
codelink = derive2 { name="codelink"; version="1.42.0"; sha256="0kxh3qs8plqlbq38mqyzc8lqcdsh4ig5ar2s12w5z8f17flax1fh"; depends=[annotate Biobase BiocGenerics limma]; };
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|
cogena = derive2 { name="cogena"; version="1.8.0"; sha256="0q5w7bjaizsvzi576lpkh59j0ynjklq1h2f9sz4wssvi9xpkg7h8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
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|
compEpiTools = derive2 { name="compEpiTools"; version="1.8.0"; sha256="0bc7pmxi7j6gv1irwaab1z3x350pnnarp216lhvkn799g6bard9r"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
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compcodeR = derive2 { name="compcodeR"; version="1.10.0"; sha256="0fzwxnf2n408k3548c3ravddd1m6vdc6212vnka5vggjhr6aapbm"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
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consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.2.0"; sha256="0fmryl0lhahh75iy1ngqvv607iz1y9a1div3wkhw22hkzwkj0r9m"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; };
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contiBAIT = derive2 { name="contiBAIT"; version="1.2.0"; sha256="07l8fy2caynakkixyipym7wmnvrjdng6j3gqqy6lbsczc18l2ljm"; depends=[BH BiocParallel clue cluster colorspace diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; };
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conumee = derive2 { name="conumee"; version="1.8.0"; sha256="0a1abk4xfzlmz87gl6iysgriy1crs7yzhr11qajbayf7qlajyk1l"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; };
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convert = derive2 { name="convert"; version="1.50.0"; sha256="01cgfnlnry5p3zjnb93cwm16kqdcl2szbps4pvgs3b8myznq3c4k"; depends=[Biobase limma marray]; };
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copa = derive2 { name="copa"; version="1.42.0"; sha256="1k93l7sgia6p6acbzdg48pr3l7lcc6v3k4g2mgixm2r130i78s3v"; depends=[Biobase]; };
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copynumber = derive2 { name="copynumber"; version="1.14.0"; sha256="1hm0k2gqgsgqvald19x09pf3x37xyyjwm5f32dxivfb04n504s1v"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; };
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cosmiq = derive2 { name="cosmiq"; version="1.8.0"; sha256="12bc7hbjww6kza2hrg2x691h3nrsx74hji93xsk14zkf5z3c17wd"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; };
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|
covEB = derive2 { name="covEB"; version="1.0.0"; sha256="0sbcsf6y68n49w7zvzci3q3dmgi7vji3b3rfa4xzqzdj89zzns8z"; depends=[Biobase gsl igraph mvtnorm]; };
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covRNA = derive2 { name="covRNA"; version="1.0.0"; sha256="0igvcnni8in70dch50l6vx8aj66rgbaxh93y0bv86mnvmzs5avhk"; depends=[ade4 Biobase genefilter]; };
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cpvSNP = derive2 { name="cpvSNP"; version="1.6.0"; sha256="0yw04dsbhvg1hfhd71b76cny79r553y8gfin2jzzy6jkifzd19fq"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
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cqn = derive2 { name="cqn"; version="1.20.0"; sha256="1ac8kwd43ynli6hwfz9innlpiys1vyvq0ic8garixwpv9qwayrvs"; depends=[mclust nor1mix preprocessCore quantreg]; };
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crisprseekplus = derive2 { name="crisprseekplus"; version="1.0.0"; sha256="1cvz483j94v2kk6fcjh22kj71zs097wghqfsdmr128za38x9vxf0"; depends=[AnnotationDbi BiocInstaller BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; };
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crlmm = derive2 { name="crlmm"; version="1.32.0"; sha256="1pa8879k0xdgmz5mk4lq8rhi0v9ai01bv3h1c0cq6blhvyca1rw2"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
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crossmeta = derive2 { name="crossmeta"; version="1.0.1"; sha256="1fid7bl27vsj6kxkwpymkvm5b8p5xq25xk3d8x2r1k4sx10nfidl"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocInstaller data_table DT fdrtool GEOquery limma matrixStats metaMA miniUI oligo pander RColorBrewer rdrop2 shiny stringr sva]; };
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csaw = derive2 { name="csaw"; version="1.8.1"; sha256="0vq3kxwqaaxz7k710f5y3pb8jidiqp815f5h4hy174cgmj3y1sz2"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; };
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ctc = derive2 { name="ctc"; version="1.48.0"; sha256="137087cms5rdivm1fh2m5v414lcf96sch409b3yapkl8zva99i0q"; depends=[amap]; };
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ctsGE = derive2 { name="ctsGE"; version="1.0.0"; sha256="00dmky3fggz0xq1hwwk5xk9lbk93jmym5fc0g628apq520g9h7b0"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; };
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cummeRbund = derive2 { name="cummeRbund"; version="2.16.0"; sha256="1191frlhs738xcfqcw0la7jx4jhiqfnqqcaj1a8z61p0rkx2vi70"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; };
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customProDB = derive2 { name="customProDB"; version="1.14.1"; sha256="0m4gl4w7lwvz1irwbrgx4xz8ipz55h2xz85pl89jpr35cxv7gh6z"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; };
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cycle = derive2 { name="cycle"; version="1.28.0"; sha256="17azpsw3ah7ifshn0gfnfa458y70l551ix4s623d3wjbzdbk03kj"; depends=[Biobase Mfuzz]; };
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cytofkit = derive2 { name="cytofkit"; version="1.6.5"; sha256="1ml3g8p9r7azg3c31izrvkbpfss49q8ns293jqsk9470h9yl2p4m"; depends=[Biobase colourpicker destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny vegan VGAM]; };
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dSimer = derive2 { name="dSimer"; version="1.0.0"; sha256="0a36xlq0hsn7krf23ynmny6gckv3iisisr7pp928jblh43pspr0r"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; };
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daMA = derive2 { name="daMA"; version="1.46.0"; sha256="04x1ipqa04khki98yq8qyzlwjwz3p3ra18s4qc1hkfqsgqij20bm"; depends=[MASS]; };
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dada2 = derive2 { name="dada2"; version="1.2.2"; sha256="1996n96afn074h5mkwbdi8chvswb8xc9ms6rnbb060vdzwsrfi7k"; depends=[Biostrings data_table ggplot2 Rcpp RcppParallel reshape2 ShortRead]; };
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dagLogo = derive2 { name="dagLogo"; version="1.12.0"; sha256="14swyk3vywbm09cs4ny7wrjy9q4nmpy5nis1ik18ilmifqff3xh7"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
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dcGSA = derive2 { name="dcGSA"; version="1.2.0"; sha256="0fz730m7agvidrq3rdkymaa9vn5ry0jj2p8bzlpzb8ab7siaqapr"; depends=[BiocParallel Matrix]; };
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ddCt = derive2 { name="ddCt"; version="1.30.0"; sha256="03j2njmx90ivd9rb2vsd4fxcciwy9q8fj48rv3z43wrq4vbkf8s8"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
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ddgraph = derive2 { name="ddgraph"; version="1.18.0"; sha256="17rmc4fcf1vac9jw95h4nqr32jk7vpn10ddxgl0qp9zcabxd8vm6"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; };
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debrowser = derive2 { name="debrowser"; version="1.3.11"; sha256="18hc0zlw0dzhqsnjhw7grb77y3mya2hdp1g4kgkk9fah44y8xihs"; depends=[annotate AnnotationDbi baySeq clusterProfiler d3heatmap DESeq2 devtools DOSE DT edgeR GenomicRanges ggplot2 ggvis gplots igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db RColorBrewer RCurl reshape2 S4Vectors shiny shinydashboard shinyjs stringi SummarizedExperiment sva V8]; };
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deepSNV = derive2 { name="deepSNV"; version="1.20.0"; sha256="00zl9sxifx4z2ydab6fdfyaidfin0m79v603nwv1h3kac703awvs"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
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deltaGseg = derive2 { name="deltaGseg"; version="1.14.0"; sha256="1qwzfg284ac8snwc1v9lwqd2cfkzvgp1gc0baf802kdwnp94hpq5"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
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derfinder = derive2 { name="derfinder"; version="1.8.5"; sha256="1snwy5q99jy5lcnrdmanclyhfsiax5gslznphzpps19hdzby045r"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
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derfinderHelper = derive2 { name="derfinderHelper"; version="1.8.1"; sha256="0920kl7lsjf9hzxh304q2n4n5nscxmaiacxqbn2ql9ja7saypqag"; depends=[IRanges Matrix S4Vectors]; };
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|
derfinderPlot = derive2 { name="derfinderPlot"; version="1.8.1"; sha256="0fvyira43hknhs72s520czprgcgy4hh54pmcsd3caca2f077cxks"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; };
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|
destiny = derive2 { name="destiny"; version="2.0.8"; sha256="1zqmfi8ha028lcwb147m4xin4zkgrg5aqh4mp0aidqv0d8p59hkp"; depends=[Biobase BiocGenerics FNN Hmisc igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother VIM]; };
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|
dexus = derive2 { name="dexus"; version="1.14.0"; sha256="04vihwcvb7kx1i1pws5rhk1cdnkrhh6ipi8fwz2yfizyc253hfmh"; depends=[BiocGenerics]; };
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|
diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.56.0"; sha256="17fyvgw9izdzhh1nmd0g0ibaxsy36438dbvszf9c447h21qqr3r5"; depends=[minpack_lm]; };
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|
diffHic = derive2 { name="diffHic"; version="1.6.0"; sha256="1331cf5d774hsd037gvzjx8dym5m0kk2azjb17gls1fqd08y33g6"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; };
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|
diffloop = derive2 { name="diffloop"; version="1.2.2"; sha256="1hkhprz6bxpd94l5648j03xxn5rj85dl4dl419pfi4n7r21gywrq"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; };
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|
diggit = derive2 { name="diggit"; version="1.6.0"; sha256="0n5slh0w1g8zdnrbqxfram5j82yy5aaw9m7h5r5ybw6hbwmjf93r"; depends=[Biobase ks viper]; };
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|
dks = derive2 { name="dks"; version="1.20.0"; sha256="09y7h7gw5p3rxrbwg4mq4qpp89cv6gj45idilv30jvsjyvv03a31"; depends=[cubature]; };
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|
domainsignatures = derive2 { name="domainsignatures"; version="1.34.0"; sha256="0sw6fyv91nrgf55g0387hghxa7gsfcqb81lmpg11ccvm8pzj7hlp"; depends=[AnnotationDbi biomaRt KEGG_db prada]; };
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|
doppelgangR = derive2 { name="doppelgangR"; version="1.2.0"; sha256="06zbgkyi38v80d2szfhklbnxpnl3lfqq78ha7y8zwa2l16pkpj0m"; depends=[Biobase BiocParallel digest impute mnormt sva]; };
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|
dualKS = derive2 { name="dualKS"; version="1.34.0"; sha256="1qh3v18gp1flryj6wzyvi20rd7gh35rvq9cyir72cj801w95rkzs"; depends=[affy Biobase]; };
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|
dupRadar = derive2 { name="dupRadar"; version="1.4.0"; sha256="1m0fk5aq5nx98khkahq1wwq4hs6rfnf3gi0bnyfcm0719hk70nah"; depends=[Rsubread]; };
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|
dyebias = derive2 { name="dyebias"; version="1.34.0"; sha256="16nxwg53ccx128k5ih26gm9z18n6prbas7nxm5hgfl44ihl6a2w6"; depends=[Biobase marray]; };
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|
easyRNASeq = derive2 { name="easyRNASeq"; version="2.10.0"; sha256="1jjwskac47scnbs0xdxw48l2lm389gpf38rg93z6z4sri5qk9xbk"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
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|
ecolitk = derive2 { name="ecolitk"; version="1.46.0"; sha256="1mz2qk6cf0sq2395p7snj9mjqnsh3jkcbj3hd4awc4iyj4zrcw3l"; depends=[Biobase]; };
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|
edge = derive2 { name="edge"; version="2.6.0"; sha256="02825wnwysafi06vr5vglwld52hz9dvyrsz57rxx7bfras1y60xw"; depends=[Biobase jackstraw MASS qvalue snm sva]; };
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|
edgeR = derive2 { name="edgeR"; version="3.16.5"; sha256="04vpa0a6dkkjyvvfbkmfjyaxf2ldkagi66g028qpaszd8jsk8yiv"; depends=[limma locfit]; };
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|
eegc = derive2 { name="eegc"; version="1.0.0"; sha256="00l7aym526p9l6iz3j72v9n2c42l70mm1nx7q653jfhbivdikh0i"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; };
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|
eiR = derive2 { name="eiR"; version="1.14.1"; sha256="16s07903wq9wwirkwv4pd77kpi1rkbmlyg24bg38zlanfyqprqfq"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; };
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|
eisa = derive2 { name="eisa"; version="1.26.0"; sha256="0hvpk8jsh5f0b23n4bk8h238j4afw1fdkcr9l4k3m9hm4078xjj0"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
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|
ensemblVEP = derive2 { name="ensemblVEP"; version="1.14.0"; sha256="175fj7w2zawpymsjbcqxwp82la6lb60ajp5sbz3hkr9mscb9xi19"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
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ensembldb = derive2 { name="ensembldb"; version="1.6.2"; sha256="1hxvjplkgkibjfzrbi6whqr7czf5digh96j7ww6szdyxy86gbf3r"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
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epigenomix = derive2 { name="epigenomix"; version="1.14.0"; sha256="0wp8xbqy98b9i1vwdhjg3wbsi2nfqm9vl1alzp67s92sdafa0lax"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; };
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|
epivizr = derive2 { name="epivizr"; version="2.4.1"; sha256="119q39cr0fawrr4a64qx4fxddwmxcav44fq4i0dip0wf7pr7wwrw"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; };
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|
epivizrData = derive2 { name="epivizrData"; version="1.2.0"; sha256="0vr3czsdky6f4s60jg8ddm47kf5qsk3dj76kwwbaz9ffd3sgsv0z"; depends=[Biobase epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; };
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|
epivizrServer = derive2 { name="epivizrServer"; version="1.2.0"; sha256="0ajxc77g604m5756bx8ivv0jqfdkglh4vjc4295d1dzwml555xil"; depends=[httpuv mime R6 rjson]; };
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|
epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.2.0"; sha256="0nm644hmryyn8wsgzm129nldixn6z3yqff6851c7nwifz7vkzsln"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; };
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|
erccdashboard = derive2 { name="erccdashboard"; version="1.8.0"; sha256="09hba0gbfgq7799kd41vm4j7qsyhkfg1awi8mymqqfb9fkdladkh"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
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|
erma = derive2 { name="erma"; version="0.6.0"; sha256="1540i8m9fr2v8n8pzf0zfjcv2gxmfd1b2fld73hkcfv2mkfiks1m"; depends=[AnnotationDbi Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny SummarizedExperiment]; };
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|
esetVis = derive2 { name="esetVis"; version="1.0.1"; sha256="1s56qkm0r93bl7bfsp804q5fhcqmkazwh9g5jv01v23llsd6i0b6"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; };
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|
eudysbiome = derive2 { name="eudysbiome"; version="1.4.0"; sha256="1sjqn0l25hw8y8i0g0ba22h5z9drj7m6104dwyfl41rprrasxjps"; depends=[Biostrings plyr R_utils Rsamtools]; };
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|
exomeCopy = derive2 { name="exomeCopy"; version="1.20.0"; sha256="1hdhbnb318m05bhiqijnci1d0q40d0lpw5cnvsszg6jykks3axxm"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
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exomePeak = derive2 { name="exomePeak"; version="2.8.0"; sha256="0573n29115djdbb47dkidwrx9m9j84ajamqanq0vx8rgjrg2xljm"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
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explorase = derive2 { name="explorase"; version="1.38.0"; sha256="04338jfp3kf8wngm15ws3q2r6d2wc7kvzvf50nmx6dji52952807"; depends=[limma rggobi RGtk2]; };
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|
fCCAC = derive2 { name="fCCAC"; version="1.0.0"; sha256="0mgzk2siwwq5ajmzqv7k5w3a8zsha7vawqj3frzfmsccbaifdw9h"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; };
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|
fCI = derive2 { name="fCI"; version="1.4.0"; sha256="188599kcl50k3lvdn5z1r3xy4fnipma2idacxglrfh5pxbnc0wf7"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
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fabia = derive2 { name="fabia"; version="2.20.0"; sha256="14lnyc9b0h9kb0xp7miiz3znwsbdb3ar1j5qlnfl0s9syc9y0p46"; depends=[Biobase]; };
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facopy = derive2 { name="facopy"; version="1.8.0"; sha256="02z3bdsiz3crzlb038av9bsmbwq2wi3hxfdizngkcc8x2zp4gl4f"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz S4Vectors scales]; };
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factDesign = derive2 { name="factDesign"; version="1.50.0"; sha256="0zmbnb5nf6724k6xbmn19pp2jflfr0ckl11zhms0yhhmagd17wlz"; depends=[Biobase]; };
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farms = derive2 { name="farms"; version="1.26.0"; sha256="00hxllk193v5rbmqzayv7cizlz1kpba7jpxafd2n02471ga7qjvf"; depends=[affy Biobase MASS]; };
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fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.10.0"; sha256="0aqagldg2qc8fhk6131dj4rr5yka0sr19m7pqr1pxczg6gn7yxpr"; depends=[Hmisc LiquidAssociation WGCNA]; };
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fastseg = derive2 { name="fastseg"; version="1.20.0"; sha256="1ax0c5apmixyl7daahb3wqq8m8mc6prrylgfgbnv02rx5b3ii9hn"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; };
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fdrame = derive2 { name="fdrame"; version="1.46.0"; sha256="1zc40aa32jijmvxc07sv4gp0hdw0m4rd06aslfjyb7ngsz16lik6"; depends=[]; };
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ffpe = derive2 { name="ffpe"; version="1.18.0"; sha256="0p1sdapm6394j2xknn44g1vgry1ys004q9fkgchv40yy874ym1w9"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
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fgsea = derive2 { name="fgsea"; version="1.0.2"; sha256="1yq4s4g4xxzcpkv9dpbg29444iy38vfgwj4wgr47rjjq8njfblfx"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Rcpp]; };
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|
flagme = derive2 { name="flagme"; version="1.30.0"; sha256="0s6f1928fswv8fvbqrhgq6ah0j7pqpar9q5xs3nwmig3nb9x8win"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; };
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|
flipflop = derive2 { name="flipflop"; version="1.12.0"; sha256="1sbqdynm4wbz3ybyzdaa6scpyav9fyn0zjm817sl8gpnsnp89m5g"; depends=[GenomicRanges IRanges Matrix]; };
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flowAI = derive2 { name="flowAI"; version="1.2.10"; sha256="1hwhzzjz7hwc9751p7kvs32w0nqn3yzkbwh8v7mdpfxsx7xi5pfp"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 scales]; };
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|
flowBeads = derive2 { name="flowBeads"; version="1.12.0"; sha256="1zpjgk2ppcgmhlqmknsgp0wagilgdqk8mfhjnc474yrr339dwvcs"; depends=[Biobase flowCore knitr rrcov xtable]; };
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|
flowBin = derive2 { name="flowBin"; version="1.10.0"; sha256="0357nin7rcapvj82c1bxmgcn6gryi8avgzqszhk264qzmlhl2kq7"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
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flowCHIC = derive2 { name="flowCHIC"; version="1.8.0"; sha256="1fvy99wql8lszd5kcp9gms111hw8mxkmdv68jl8cya3x7b113cr5"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
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|
flowCL = derive2 { name="flowCL"; version="1.12.0"; sha256="0cxaixdx1i25p0vv8b6ynjb144cz6b9lyx40d0i21iv0fxvyxb37"; depends=[graph Rgraphviz SPARQL]; };
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|
flowClean = derive2 { name="flowClean"; version="1.12.0"; sha256="05jnp36ar05sgy06rfd91zkjsbinag7nylz4fimkzlsfwkaya2i1"; depends=[bit changepoint flowCore sfsmisc]; };
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|
flowClust = derive2 { name="flowClust"; version="3.12.2"; sha256="1hq7wmzd2jpbr8scvi7scg2y1cf5pq562fsl14i1p4112fhj88n1"; depends=[Biobase BiocGenerics clue ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; };
|
|
flowCore = derive2 { name="flowCore"; version="1.40.6"; sha256="0r4plrqbmqhn7zlhr6c8zb969r41jsdb0v7vk730zc8bqhqnw5c0"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; };
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|
flowCyBar = derive2 { name="flowCyBar"; version="1.10.0"; sha256="0q3lizif3mc057yfbxsm1b6l79ia3ls9iaalnsrlmxlbqk3rylcp"; depends=[gplots vegan]; };
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|
flowDensity = derive2 { name="flowDensity"; version="1.8.0"; sha256="0s0zd6q5fxl40wv9fmdd6g2x8ar67ian0ihn61v95z2kgcrz2ygd"; depends=[car flowCore GEOmap gplots RFOC]; };
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|
flowFP = derive2 { name="flowFP"; version="1.32.0"; sha256="010m41pbz2f5rcx6453x889mjwbx0rx37lcnfhrz3hsnzqnykdim"; depends=[Biobase BiocGenerics flowCore flowViz]; };
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|
flowFit = derive2 { name="flowFit"; version="1.12.0"; sha256="1laaa4f4jbhr1ri6zakbh2wwivhq8b44xmb1yvvrjy61fqfl4d9f"; depends=[flowCore flowViz gplots kza minpack_lm]; };
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|
flowMap = derive2 { name="flowMap"; version="1.12.0"; sha256="0pnq4dc364dr6wjvim5dav8399k2vwq0i7zfbjq70r8hk6d59c53"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
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|
flowMatch = derive2 { name="flowMatch"; version="1.10.0"; sha256="11r1x2aicbgj5sbyinwzniv463yrpvxlm36agmspgjnq4ir1p3m7"; depends=[Biobase flowCore Rcpp]; };
|
|
flowMeans = derive2 { name="flowMeans"; version="1.34.0"; sha256="1jqci86yi0q5qvzhj9448gvv587kgkbx79r90957bwzj6z5nlj2z"; depends=[Biobase feature flowCore rrcov]; };
|
|
flowMerge = derive2 { name="flowMerge"; version="2.22.0"; sha256="07x5im2m98nszcaw4ip6l3pnd6j6nrc17amnnpxqpnbpm73hfsz6"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
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|
flowPeaks = derive2 { name="flowPeaks"; version="1.18.0"; sha256="1211wcypqjwdv2w4pyzkmjg2c0yz18r5i4mdj114lbia6v1p1jza"; depends=[]; };
|
|
flowPloidy = derive2 { name="flowPloidy"; version="1.0.0"; sha256="189al2wzpr1f7haihifyfzvd42sj6nk6f305ny5v9lcr4afp3538"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; };
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|
flowPlots = derive2 { name="flowPlots"; version="1.22.0"; sha256="0wskj8nfi0zd7rmx0spz8l2h8xzw4qpm9qnxv7s4cq3s8spknbmp"; depends=[]; };
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|
flowQ = derive2 { name="flowQ"; version="1.34.0"; sha256="0ax0m6dzfhnr0n0qnhxlhq58vrxy583c9aznczldx808xf2krx8x"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; };
|
|
flowQB = derive2 { name="flowQB"; version="2.2.0"; sha256="11kwv1nwzvpfppla5n3zsz64hljlrjblbcgd04hfzzqbck5d9c7w"; depends=[extremevalues flowCore]; };
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|
flowStats = derive2 { name="flowStats"; version="3.32.0"; sha256="104yp7agkvr7p8ywmrqh8xy1anrvrnnwwl34pw68bl50p7dcb5qp"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow]; };
|
|
flowTrans = derive2 { name="flowTrans"; version="1.26.0"; sha256="11h6rs6844mv5wjkr9l5hlmfv2nkwzrhg80l773mx2yllzqq84vg"; depends=[flowClust flowCore flowViz]; };
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|
flowType = derive2 { name="flowType"; version="2.12.0"; sha256="1ghbxlfpc9l1cg54b898rh3p79dldhpza4qynyx2q3b0yc4hanil"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; };
|
|
flowUtils = derive2 { name="flowUtils"; version="1.38.0"; sha256="0rs62hbfzgb2mva7irjmnqcccn2zp3cn1177ji6faszkzsnmmz0i"; depends=[Biobase corpcor flowCore graph RUnit XML]; };
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|
flowVS = derive2 { name="flowVS"; version="1.6.0"; sha256="1ivsyqrxg4xg67jgmn9rm9pmmr751bpfxqsgpx8m8cw8ywxbvm3m"; depends=[flowCore flowStats flowViz]; };
|
|
flowViz = derive2 { name="flowViz"; version="1.38.0"; sha256="1jrn6j2i1i6hiw4xc7s271rixz1qi4nr9awyx1dv48fnp5bhz2dd"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
|
|
flowWorkspace = derive2 { name="flowWorkspace"; version="3.20.5"; sha256="17yd6hhlmagpasp3cksza1v8g62kkl1nw8rh0jif8sxz6hlsh7jd"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz scales stringr XML]; };
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|
flowcatchR = derive2 { name="flowcatchR"; version="1.8.0"; sha256="0mzjva3vyf7xcgcr62aiy547p2ga9kv2543bwjd3f7y6ankz7cnn"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
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|
fmcsR = derive2 { name="fmcsR"; version="1.16.0"; sha256="05k8c8vhdq6lqgrmc8r7dqwixindwpn32hp2a52vkqny8gn9fvbg"; depends=[BiocGenerics ChemmineR RUnit]; };
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|
focalCall = derive2 { name="focalCall"; version="1.8.0"; sha256="088453sxnlz76iz6fkardi3pb3z033pi4x9na6gn85sxpa53byqf"; depends=[CGHcall]; };
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|
frma = derive2 { name="frma"; version="1.26.0"; sha256="1q6hfmdh1m9nifz593i70x58q877lkyx55yigw095f2pgr7ikqg5"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; };
|
|
frmaTools = derive2 { name="frmaTools"; version="1.26.0"; sha256="1vjdci710y9zzbnhfc1yp48bzvnzp2lrl6q6gqxc64m4xh4s0fs0"; depends=[affy Biobase DBI preprocessCore]; };
|
|
gCMAP = derive2 { name="gCMAP"; version="1.18.0"; sha256="1s4zdhwxpwv8ddp3914syrbmpfhryvaq2lqiyal4nhhp5nklbmlj"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; };
|
|
gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.14.0"; sha256="1wdfj1qf8d80qxj17ji863gripdxdzcldfw5s6z7jblirabsxp7j"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; };
|
|
gCrisprTools = derive2 { name="gCrisprTools"; version="1.0.0"; sha256="1zqxj566hzmd1yfjrc0nfvd1djsf2vpj1jcx25c85ssssbh3if2f"; depends=[Biobase BiocParallel ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; };
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|
gQTLBase = derive2 { name="gQTLBase"; version="1.6.0"; sha256="07fas0d1ybpk9h8qf4hdhnh0gq9ip9xc4hfaxsdnk65xy2p4dvhc"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
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|
gQTLstats = derive2 { name="gQTLstats"; version="1.6.0"; sha256="0lpnn8992dy7bavsyym3m361sgyra54p8wz0xg25f0d4dw5bg4sq"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggplot2 gQTLBase IRanges limma mgcv reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
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|
gaga = derive2 { name="gaga"; version="2.20.0"; sha256="1jnbmirwxnwdyvx76gqrz4y8rx5g9llnnbz06sqjkigprians1lw"; depends=[Biobase coda EBarrays mgcv]; };
|
|
gage = derive2 { name="gage"; version="2.24.0"; sha256="05kdc8pqjwhi9pl0pwm4rkisrdlkkrhnj0iwwya5vakgvh3bw42d"; depends=[AnnotationDbi graph KEGGREST]; };
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|
gaggle = derive2 { name="gaggle"; version="1.42.0"; sha256="1a04mzcamgw1k1s0s2n9myv9mj84lrb4mvlircnmpy6a7ag5d3lb"; depends=[graph rJava RUnit]; };
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|
gaia = derive2 { name="gaia"; version="2.18.0"; sha256="10wi2i8yqrcxjs7vp2dywrj4fqvgd3sd238bvy7kj5kvr24ajfd1"; depends=[]; };
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|
garfield = derive2 { name="garfield"; version="1.2.0"; sha256="09ijwqxmwq3432bkx4zi0c8h93nj3jd4jqyz5lm65hjn2slmwbfl"; depends=[]; };
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gaucho = derive2 { name="gaucho"; version="1.10.0"; sha256="13wavb2l3bdkd3yjsd9v53wfmylq7y19q70ybncyd6qr05mzqj07"; depends=[GA graph heatmap_plus png Rgraphviz]; };
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|
gcatest = derive2 { name="gcatest"; version="1.4.0"; sha256="0b365k1a8yrqnxrrm8iclgg06h1mcrbl6kfkj2rzsajg4ahx9gly"; depends=[lfa]; };
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|
gcrma = derive2 { name="gcrma"; version="2.46.0"; sha256="0yr1wcf32ihjpkb4swnnf933i0sbniyjswsvx9ly4z1dv8yigjji"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
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|
gdsfmt = derive2 { name="gdsfmt"; version="1.10.1"; sha256="1mn7ircm2i9bfmxprbl2rdvwazngnv1jxdxpcdknl5c66j5lhzap"; depends=[]; };
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|
geNetClassifier = derive2 { name="geNetClassifier"; version="1.14.0"; sha256="1z3j12y97n8bc8nc9gjfs1bbmjbbwgkwfp7g14g11p3qfhlsjyzn"; depends=[Biobase e1071 EBarrays minet]; };
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|
geecc = derive2 { name="geecc"; version="1.8.0"; sha256="0yhi0a2141q93dxr26wr44724yyfh9bykr7swllql036nkdpfhvv"; depends=[gplots hypergea MASS Rcpp]; };
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|
genArise = derive2 { name="genArise"; version="1.50.0"; sha256="1f8ic85955v866sqc02b5m2rk8agws80w2rv7g4j7kk5ssffrv0r"; depends=[locfit tkrplot xtable]; };
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|
genbankr = derive2 { name="genbankr"; version="1.2.1"; sha256="1pcn4asxxzark6w5a188as3h5klwb6yj5varrf9lm6qdrhmdwimy"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; };
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|
geneAttribution = derive2 { name="geneAttribution"; version="1.0.1"; sha256="15vbi1fax2jwbh5j82vv3qlzhkscwd9qm3ls51rgbir72m915x3a"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; };
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|
geneRecommender = derive2 { name="geneRecommender"; version="1.46.0"; sha256="1ddj9w6jdbcxnzw22q8qjg6b0pydcin51h3n7l7crwa0d8wvmg6j"; depends=[Biobase]; };
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|
geneRxCluster = derive2 { name="geneRxCluster"; version="1.10.0"; sha256="18h5a9yb6h7lhz4yija3vx7ca8x4mvlji659kqzy7a7prm9yqi2w"; depends=[GenomicRanges IRanges]; };
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|
geneXtendeR = derive2 { name="geneXtendeR"; version="1.0.0"; sha256="104mn7rgsakc89gz3phsp00ijcw99zxbyd2q96s5ikz1c4pnf6bl"; depends=[data_table dplyr rtracklayer]; };
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|
genefilter = derive2 { name="genefilter"; version="1.56.0"; sha256="1vzgciqd09csqcw9qync8blsv51ylrd86a65iadgyy6j26g01fwd"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; };
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|
genefu = derive2 { name="genefu"; version="2.6.0"; sha256="0gh6n4k1b0f57w2lb1kjwymh5x8iirvrmhqlq46yybfs4928h147"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; };
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|
geneplast = derive2 { name="geneplast"; version="1.0.0"; sha256="0sxvdnw4kdr2bikibhaf538qq5adr2cv4warbpmi28wjiyzs7jy1"; depends=[ape snow]; };
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|
geneplotter = derive2 { name="geneplotter"; version="1.52.0"; sha256="1p6yvxi243irhjxwm97hp73abhwampj0myyf8z00ij166674pc7h"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
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|
genoCN = derive2 { name="genoCN"; version="1.26.0"; sha256="0v0sg2h9f3dqwydfvydbpjw37xzl2yn26244nyq8rzb1g5p30l6l"; depends=[]; };
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|
genomation = derive2 { name="genomation"; version="1.6.0"; sha256="1m4mz7wihj8yqivwkzw68div8ybk4rjsai3ffki7xp7sh21ax03y"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rhtslib Rsamtools rtracklayer RUnit S4Vectors seqPattern]; };
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|
genomeIntervals = derive2 { name="genomeIntervals"; version="1.30.1"; sha256="0kglh50x76b4n0r6cfjk63bja1d1mdf5m14k7n6jjg6glprys3j5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
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|
genomes = derive2 { name="genomes"; version="3.4.0"; sha256="160279nd3iybpn6v1da9yr248fac865hg0dmxq32mbdhmp591xjy"; depends=[curl readr]; };
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|
genoset = derive2 { name="genoset"; version="1.30.0"; sha256="08vyiyipcnrw3r8cyk4yzynzby8gy5mn8v16s582wzc37kdj46yz"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
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|
genotypeeval = derive2 { name="genotypeeval"; version="1.4.0"; sha256="057b36rjfcg45irl80c4rkiq2bkjyczdxvph6wyn6nfl657ki5k2"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
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|
genphen = derive2 { name="genphen"; version="1.2.0"; sha256="1czigszpqrvqqyrgn8jhifqq31i7qkbm7gq2i9h9x11qr0l421p2"; depends=[Biostrings e1071 effsize ggplot2 randomForest rjags]; };
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|
gespeR = derive2 { name="gespeR"; version="1.6.1"; sha256="1kk0c2hvvq1rbmkagnxsx03nd9jjnh3yci92fgb3y9vqa4gfps3n"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; };
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|
ggbio = derive2 { name="ggbio"; version="1.22.4"; sha256="1kjhxhhinl5h3h3yyb1miwy4kzngmdi418awvdiimrnj3412vvrg"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
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|
ggcyto = derive2 { name="ggcyto"; version="1.2.3"; sha256="03cb9zhpchg6ymyvp3gbma35sk81a3f7x3brkriwig74vv9x1hw5"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; };
|
|
ggtree = derive2 { name="ggtree"; version="1.6.11"; sha256="0lh6wj4bkmad2wrv6lpxz0qprhwxava6w8v0y6l3930026wj01q4"; depends=[ape ggplot2 jsonlite magrittr tidyr]; };
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|
girafe = derive2 { name="girafe"; version="1.26.0"; sha256="07d0j8px5zrb07agpsvhl5v1d2hdcavcqg0q57hs2jk4ysl98way"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
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|
globalSeq = derive2 { name="globalSeq"; version="1.2.0"; sha256="1laz11w4haiq4j754krcy3hlca2rmgwgcsy4vlc89lmfrc68pfmk"; depends=[]; };
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|
globaltest = derive2 { name="globaltest"; version="5.28.0"; sha256="0vxwhk6c2sxy46v7amnsgvgq4yy77z5mifb917649r0q4n3jaaaw"; depends=[annotate AnnotationDbi Biobase survival]; };
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|
gmapR = derive2 { name="gmapR"; version="1.16.0"; sha256="1afxlz1z6khc16ab62chnfzkm9y0vdfrfnmkdhrsqwr68lf3dh9d"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
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|
goProfiles = derive2 { name="goProfiles"; version="1.36.0"; sha256="1imwqla70j643w7h25da0f0c52szqk81z4g8vwpdpriq512d9gm9"; depends=[AnnotationDbi Biobase GO_db]; };
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|
goTools = derive2 { name="goTools"; version="1.48.0"; sha256="171picf9ic0z1lbpmyy8dkvglq75dnpzj39yzxkkinkbyzlnfhm2"; depends=[AnnotationDbi GO_db]; };
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|
goseq = derive2 { name="goseq"; version="1.26.0"; sha256="1xay2ay8whwsvy10wss07svc638gg4ks1qayskplvrwxkp2kg2p8"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; };
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|
gpls = derive2 { name="gpls"; version="1.46.0"; sha256="1y12zzkf7knc1j8xh3kqax3jzlllwb8hyfqjnxxailad3gbxwc1x"; depends=[]; };
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|
gprege = derive2 { name="gprege"; version="1.18.0"; sha256="1gjcgy0bw87rgh3j8pq3940l7g6zzmwnzvkrrfviizny0p8ynxgn"; depends=[gptk]; };
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|
graph = derive2 { name="graph"; version="1.52.0"; sha256="0g3dk5vsdp489fmyg8mifczmzgqrjlakkkr8i96dj15gghp3l135"; depends=[BiocGenerics]; };
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graphite = derive2 { name="graphite"; version="1.20.1"; sha256="1lkknnjac5m5wvkvbz02548q16h6c5jhzhi410vr4lfzcz7v201a"; depends=[AnnotationDbi graph rappdirs]; };
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|
groHMM = derive2 { name="groHMM"; version="1.8.0"; sha256="0d91nyhqbi5hv3mgmr2z0g29wg2md26g0hyv5mgapmz20cd9zi4y"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
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|
gtrellis = derive2 { name="gtrellis"; version="1.6.0"; sha256="09hds0dcs7w94gl7zm5w94kxzv09dsggn8wqibhx3a0m4h515wz7"; depends=[circlize GenomicRanges GetoptLong IRanges]; };
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|
gwascat = derive2 { name="gwascat"; version="2.6.0"; sha256="11y1knppdqcnj4w0hs33g2kcpx4sy8anb2y7kjgjxrpj4wvzinz9"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
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|
h5vc = derive2 { name="h5vc"; version="2.8.1"; sha256="1c4scm9z1ckmp5cdc979a44vryraqq60bzgsn329aq92r0rpd4y2"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; };
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|
hapFabia = derive2 { name="hapFabia"; version="1.16.1"; sha256="0j0iip9mdvksb2y83891mplmh18ajhpi6jmgrszp2kjjh3sfwicj"; depends=[Biobase fabia]; };
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|
hiAnnotator = derive2 { name="hiAnnotator"; version="1.8.0"; sha256="0v0js3wkcw5dlg01g5xgj0m0rzxg86y9mxxw72jy6vr8j78wkzci"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
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|
hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.10.0"; sha256="0krgb5139fl425vyz13vyzr1kiv06nysk511h4yiif4r4ggharif"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; };
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|
hierGWAS = derive2 { name="hierGWAS"; version="1.4.0"; sha256="0gahm81v1gcwph2xm0p3il1pc3wp28z3ik8l0c8mvwwd3kn69cdw"; depends=[fastcluster fmsb glmnet]; };
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|
hopach = derive2 { name="hopach"; version="2.34.0"; sha256="01rxryijz762bcf4dzha0rfmf263svy86aq7a8zxmampb39k5a62"; depends=[Biobase BiocGenerics cluster]; };
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|
hpar = derive2 { name="hpar"; version="1.16.0"; sha256="19qx0abwmn7yl7ix6wad912d3xwvmrw13idvrrfwhwj481w7b2xw"; depends=[]; };
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htSeqTools = derive2 { name="htSeqTools"; version="1.22.0"; sha256="1g0a3fmywcrsv7p2lv7r22hfvv3mbhl43yl71bp84v53r7pb95vw"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; };
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|
hyperdraw = derive2 { name="hyperdraw"; version="1.26.0"; sha256="1jvj19fq24fpj10i2gjvrb9vmf5b4wdz5xcbifkgkbwf8pb4jcci"; depends=[graph hypergraph Rgraphviz]; };
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|
hypergraph = derive2 { name="hypergraph"; version="1.46.0"; sha256="0g0hk5ykbxa0kmpmlmrw8qvvkxk8hhh1jcvx0hcbqkjmld1sgfkg"; depends=[graph]; };
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|
iASeq = derive2 { name="iASeq"; version="1.18.0"; sha256="16ranqshbcfmik400gwycv37h3azhksrh1hkv9s3s8kii1aydzrq"; depends=[]; };
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|
iBBiG = derive2 { name="iBBiG"; version="1.18.0"; sha256="1sz6yw0n6j8gz0rwwfinckgkcrynr6zp10vlwpfkrksnpwc2qw7i"; depends=[ade4 biclust xtable]; };
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|
iBMQ = derive2 { name="iBMQ"; version="1.14.0"; sha256="1g2lf38z2j5n922k7a7q5c04jz1nncyjxy7aiic305lnjmdhh91h"; depends=[Biobase ggplot2]; };
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|
iCARE = derive2 { name="iCARE"; version="1.2.0"; sha256="1yq1kp0jzf8jiwf7l8chn4lmvlzfhfwc78ivdlqydrl2xarvb725"; depends=[]; };
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|
iCOBRA = derive2 { name="iCOBRA"; version="1.2.0"; sha256="1nvfp09j3n689szrjlvnjhbp7bpma6b00mpkffvadcprgalb1j63"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; };
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|
iCheck = derive2 { name="iCheck"; version="1.4.0"; sha256="1vara7v0811n6d3h9b3xwbw8hd8jlxkr7mb920m5v5l86rnd798y"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; };
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|
iChip = derive2 { name="iChip"; version="1.28.0"; sha256="00scfxyklyzpmd7yqpzh1xbq9d6drngczkvhmzklvnwcwxicw6sg"; depends=[limma]; };
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|
iClusterPlus = derive2 { name="iClusterPlus"; version="1.10.0"; sha256="1qjr1d53xq4ad9d1fqx8cg0wf0br19ga1a7m7yrjmqxnjf82kfcc"; depends=[]; };
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|
iGC = derive2 { name="iGC"; version="1.4.0"; sha256="1zw9lqwvnmvgj2xvq6dhi7vs1lklkfpmhxf99hqbbr6km30gjq6a"; depends=[data_table plyr]; };
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|
iPAC = derive2 { name="iPAC"; version="1.18.0"; sha256="1m6c1ka7yx6ish9cw3kl683dp9zn3nbr4ii49b09lzjvxq6n2cbi"; depends=[Biostrings gdata multtest scatterplot3d]; };
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|
iSeq = derive2 { name="iSeq"; version="1.26.0"; sha256="07ri9w8i57jigfs7zlz35k6qcin5pipv7c4w9k7nxlrm43n6s7nd"; depends=[]; };
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|
ibh = derive2 { name="ibh"; version="1.22.0"; sha256="0k2pncvjc8zr4xxb4yqiphc8a02hsl2r2j6mflhzs7iw61z8rq4q"; depends=[simpIntLists]; };
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|
idiogram = derive2 { name="idiogram"; version="1.50.0"; sha256="13jhq6bd938rsyqfl3qjzryqx9pv6z2k7bya8r0vrjrzcssnasyh"; depends=[annotate Biobase plotrix]; };
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|
illuminaio = derive2 { name="illuminaio"; version="0.16.0"; sha256="0ysvblxbk3hdnd70l31f2qzg3qsrpdyix395zhqjz5hmviyy91q7"; depends=[base64]; };
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|
imageHTS = derive2 { name="imageHTS"; version="1.24.0"; sha256="0c5szadgyz53r9cj14gc5r1s3wkv68pi66dlg9gnnpqyfcfpsd8y"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; };
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|
immunoClust = derive2 { name="immunoClust"; version="1.6.0"; sha256="0nmgvwccfnzpfd6x6x52qgxqi56348ljpdwhylflxbd1f4szqr58"; depends=[flowCore lattice]; };
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|
impute = derive2 { name="impute"; version="1.48.0"; sha256="1164zvnikbjd0ybdn9xwn520rlmdjd824vmhnl83zgv3v9lzp9bm"; depends=[]; };
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intansv = derive2 { name="intansv"; version="1.12.0"; sha256="0djcb8yzrppbawp5dvf45cj8j3g9z95kifzyk3ndz48vr62ksaav"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
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interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.12.0"; sha256="1psai99wp2d4hchfm2m7bmy9hxwz0kfl1mc9xgq57k5vq8bdq7gc"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
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|
interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.12.0"; sha256="1gxa1sc2sk7xvxc4p74cwjkxdk3ns7igl51jg7a7086k729k3m8j"; depends=[BiocGenerics shiny]; };
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|
inveRsion = derive2 { name="inveRsion"; version="1.22.0"; sha256="1f35l6gnvs5kz0v4d2dhq6mdpkvknhzadzka2m0jdhhpdk1vqkq3"; depends=[haplo_stats]; };
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|
iontree = derive2 { name="iontree"; version="1.20.0"; sha256="1kvj73vzgrszvyyb0xlvc46ba58pznsczhxj8mxd6pp2sa3pjgbh"; depends=[rJava RSQLite XML]; };
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|
isobar = derive2 { name="isobar"; version="1.20.0"; sha256="171a3jphxwx7n9kw77c1wng6fbv1fm5qxlwxz8n8fbnr6z4n0k2b"; depends=[Biobase biomaRt distr ggplot2 plyr]; };
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|
isomiRs = derive2 { name="isomiRs"; version="1.2.0"; sha256="1dgbb9nlsjbjp06wsjnzml7laqi2353xk2pwi0kqhd6yqhrkcagz"; depends=[BiocGenerics DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges plyr RColorBrewer readr reshape S4Vectors SummarizedExperiment tidyr]; };
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|
iterativeBMA = derive2 { name="iterativeBMA"; version="1.32.0"; sha256="1pkq48a8hsalfi9w1dcyzskbwzg1ba4dw5z3y11yb9fzxh9f5y7l"; depends=[Biobase BMA leaps]; };
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|
iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.32.0"; sha256="112wv08b4c3qgfd7w3a61zi1nk2va5b7ip9ayfknvj15kzrxsy9j"; depends=[BMA leaps survival]; };
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|
joda = derive2 { name="joda"; version="1.22.0"; sha256="1f2a8jn9pvi1p3x9fvj78sxl5mvar0lss4zxpivqm376sz3h71hg"; depends=[bgmm RBGL]; };
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|
kebabs = derive2 { name="kebabs"; version="1.8.1"; sha256="086a7z992wrj73k7zrkxk9zcz37r8bbnrdqhf4b3jvd0cwck7vib"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; };
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|
keggorthology = derive2 { name="keggorthology"; version="2.26.0"; sha256="0r01hz6sra2h3irjy268y24hz0yzjzcdp8wxrj5qv103fahghjk1"; depends=[AnnotationDbi DBI graph hgu95av2_db]; };
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|
kimod = derive2 { name="kimod"; version="1.2.0"; sha256="1bylbi4pwk4khhgx7ffi2sa1vqvffkmzd2c09n0pws03gpjm77ic"; depends=[Biobase cluster]; };
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|
lapmix = derive2 { name="lapmix"; version="1.40.0"; sha256="1mgabcribl4jgm35ypy5rkmigzsq3vxk71i2j2jsvil48fwwpmw9"; depends=[Biobase]; };
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|
ldblock = derive2 { name="ldblock"; version="1.4.0"; sha256="090f1yf30mklvq1kgqq28dsr4qy1zv4b1jp0c8m4a46115d7f57x"; depends=[Matrix snpStats]; };
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|
les = derive2 { name="les"; version="1.24.0"; sha256="0736ymhiq4a6aq6439nigs475x08sw3msl4jzg5g594lbs3nxklb"; depends=[boot fdrtool gplots RColorBrewer]; };
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|
lfa = derive2 { name="lfa"; version="1.4.0"; sha256="1awfqd3pmzkljn19fvflxp5q8ilncamcl3hx7ns7d4r9r98d9a3s"; depends=[corpcor]; };
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|
limma = derive2 { name="limma"; version="3.30.13"; sha256="1ji8kb19anwq2505zii2kzqlrnk75mk1mpz8vy4s1mckzs1cz4m0"; depends=[]; };
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|
limmaGUI = derive2 { name="limmaGUI"; version="1.50.0"; sha256="19jiqpkqcchbrsqac9l8a9zrcn37qc02586kr1n8c9fayhr91iby"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
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|
lmdme = derive2 { name="lmdme"; version="1.16.0"; sha256="033j6pz45wf9xzgjz25s9y7jyfc92srmispsy4m1apyb22gjazgs"; depends=[limma pls stemHypoxia]; };
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|
logicFS = derive2 { name="logicFS"; version="1.44.0"; sha256="0j7qwgxdqq2m1ffdp78xg875xi2drlv9im8mzjc9m9mxv45fmala"; depends=[LogicReg mcbiopi]; };
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|
logitT = derive2 { name="logitT"; version="1.32.0"; sha256="17r5zbf5lv13rcjlv6vw1qvqk7ha8gbqbcb957jvcdncjh1rrv72"; depends=[affy]; };
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|
lol = derive2 { name="lol"; version="1.22.0"; sha256="15q0kz4xhzj75qa3qsg2fck9w9c1s0n87dlasim35i89y56kyzki"; depends=[Matrix penalized]; };
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|
lpNet = derive2 { name="lpNet"; version="2.6.0"; sha256="1bfw7xp0dbx9kdg59x5jcwjwf8bjdqky6hvcpn2q4l9p6g9h72nn"; depends=[lpSolve nem]; };
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|
lpsymphony = derive2 { name="lpsymphony"; version="1.2.0"; sha256="142jynr4fs70zwc3plm4wcjki6sb3ampmy6wp1cxpb92jmdavc9y"; depends=[]; };
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|
lumi = derive2 { name="lumi"; version="2.26.4"; sha256="0k8d3xc1k53j0mlyy69j6dfkx9rkc305vnp72jk2k6b071ian1xw"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
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|
mAPKL = derive2 { name="mAPKL"; version="1.6.0"; sha256="0664mnmw5v6ifkrq61z4b3m3rw10133awds70h7m074qdkwl89ad"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; };
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mBPCR = derive2 { name="mBPCR"; version="1.28.0"; sha256="1r3jv0a9xn564lmszcigpqqgfhckyjwbzzmxi632wj98cn7qj4f0"; depends=[Biobase oligoClasses SNPchip]; };
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mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.8.0"; sha256="1a1v2wylv14rz96qwqrshkf63ll54bx7h6g3y6d9fy1qdfgncwgq"; depends=[GenABEL MASS outliers qtl]; };
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maCorrPlot = derive2 { name="maCorrPlot"; version="1.44.0"; sha256="11i2ri10gwmd6c9852z24v24f7hwcj378lmzxynrxqhz7825s1jr"; depends=[lattice]; };
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|
maPredictDSC = derive2 { name="maPredictDSC"; version="1.12.0"; sha256="0rf092xaw7jw1i0p57d725x4g0827yvgl29cj6qix92ssv3fjm92"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; };
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maSigPro = derive2 { name="maSigPro"; version="1.46.0"; sha256="0i2p236ysmhvmpbs4zc1rsxgd9z2c1633kxljsnyq7wqrkf4hx7i"; depends=[Biobase MASS mclust venn]; };
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|
maanova = derive2 { name="maanova"; version="1.44.0"; sha256="094zbqwj97da540z03yxprdla3fbwwhcylpg3g92p4crnp7laaym"; depends=[Biobase]; };
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|
macat = derive2 { name="macat"; version="1.48.0"; sha256="1jwqq6x9nrjyl60vpnraa4n4hp3rqqr794yh6372bqjk4ini0pph"; depends=[annotate Biobase]; };
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|
made4 = derive2 { name="made4"; version="1.48.0"; sha256="1rmgyns0xvm6v7svlzbpkinc66cg0zr2h2lwsv4xnnva4zs5w8ns"; depends=[ade4 gplots RColorBrewer scatterplot3d]; };
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|
maftools = derive2 { name="maftools"; version="1.0.55"; sha256="1wyapzh1zzqs0v725k24wlzfwkx0ap8dd2pxaqaxbmk6pg70vn3d"; depends=[Biostrings changepoint cometExactTest ComplexHeatmap cowplot data_table DPpackage ggplot2 ggrepel mclust NMF RColorBrewer rjson Rsamtools VariantAnnotation wordcloud]; };
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|
maigesPack = derive2 { name="maigesPack"; version="1.38.0"; sha256="1g6my6nabm810q34cgrlmgdnvn93g968a7jyymgh8rs3gpj9gzgv"; depends=[convert graph limma marray]; };
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|
makecdfenv = derive2 { name="makecdfenv"; version="1.50.0"; sha256="0bkkpsq5mgnkbygp3f0rvzxnmbrbd9isfbdfgq8q4ch4hwsfba28"; depends=[affy affyio Biobase zlibbioc]; };
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|
manta = derive2 { name="manta"; version="1.20.0"; sha256="1gpvjmkf14jh7z5h96ixin783xaiznag1n0lp01iarz0412jvb86"; depends=[caroline edgeR Hmisc]; };
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|
marray = derive2 { name="marray"; version="1.52.0"; sha256="1d242pjas4vqqcgj2cb3p66n1n9va3bqph62nyg0kr95fy2y7nf7"; depends=[limma]; };
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|
maskBAD = derive2 { name="maskBAD"; version="1.18.0"; sha256="0y932wzga1crd0xrfjdap0pnji2fkaqfx68s016apx1x78k755ig"; depends=[affy gcrma]; };
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|
massiR = derive2 { name="massiR"; version="1.10.0"; sha256="0qnn4cpb0xa49cxaaf7a2i87m5np1hqa6wcsxslbmvvrfik8j11b"; depends=[Biobase cluster diptest gplots]; };
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|
matchBox = derive2 { name="matchBox"; version="1.16.0"; sha256="1pz8k1ygi59h4x2ykmvzqnwv44nryhqwpb3i4wg2bgm04nvd1kcz"; depends=[]; };
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|
matter = derive2 { name="matter"; version="1.0.1"; sha256="1yh2lgv1dw4cf62iy5il095v6zsa64dhdrpzn31b8aw4p5y7g2hw"; depends=[biglm BiocGenerics irlba S4Vectors]; };
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|
mcaGUI = derive2 { name="mcaGUI"; version="1.22.0"; sha256="0jmsf9vdv6nzqrzgmfgqvfgar9d1ziqp1qvj85pgsi1200n91rna"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; };
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|
mdgsa = derive2 { name="mdgsa"; version="1.6.0"; sha256="0r1zs60922pzf7n9z1sxx7599rmq4mas0frm1931a2r9rf78dwdw"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; };
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|
mdqc = derive2 { name="mdqc"; version="1.36.0"; sha256="0fva73csci63xd4kp3nr2j3gllkkwfvp9dd0b581mfgkfa2p3khm"; depends=[cluster MASS]; };
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|
meshes = derive2 { name="meshes"; version="1.0.0"; sha256="0abqbsai946lm3dj7759q6crad3xj6919vgmnm5416sjnmfvk0v2"; depends=[AnnotationDbi DOSE GOSemSim MeSH_db]; };
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|
meshr = derive2 { name="meshr"; version="1.10.0"; sha256="170mpx0z9h4lxkl7b159nrbjl4vc2bdz92vfc6piwb3pmggg2r8r"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; };
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messina = derive2 { name="messina"; version="1.10.0"; sha256="1q3ikcq5pxbiahycbxgviry820p8498q2nh5wbdw5aq26cv00nak"; depends=[foreach ggplot2 plyr Rcpp survival]; };
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|
metaArray = derive2 { name="metaArray"; version="1.52.0"; sha256="0k9msa564981i0dc6fqsrcc3kpv58jjmkibpgn93c6966rxx76j2"; depends=[Biobase MergeMaid]; };
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|
metaCCA = derive2 { name="metaCCA"; version="1.2.0"; sha256="1d57h6a2idc5zrr8kn851b8ny2rsy1yhalrz5lch9xzl7ly5n5jc"; depends=[]; };
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metaMS = derive2 { name="metaMS"; version="1.10.0"; sha256="0f09cagf82by2wzb6gsi2wapwrgdymyhg37jnfalb00v0xhzzwwq"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; };
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|
metaSeq = derive2 { name="metaSeq"; version="1.14.0"; sha256="1jm79gd1wnyrcv8cj6ymiwj5g0b4r5p7l193zfh7v2y32ki0khq8"; depends=[NOISeq Rcpp snow]; };
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|
metabomxtr = derive2 { name="metabomxtr"; version="1.8.0"; sha256="1blxfg4ciad5rq1lxxj6i9hw1y7ljd60hqgp46hb2bdr97p4xq1r"; depends=[Biobase Formula multtest optimx plyr]; };
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|
metagene = derive2 { name="metagene"; version="2.6.1"; sha256="0zynw4bmid9m4n2v2vxy1ybbxgag7dhhf3vsipvxwn9dxfn28ls2"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges matrixStats muStat R6 Rsamtools rtracklayer]; };
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|
metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.4.0"; sha256="0sfh1zm2vkkw6gy4lkl21p33h530mff190mymf5ymj31g6ql44ag"; depends=[ape Biobase Biostrings dplyr lattice lazyeval magrittr metagenomeSeq purrr RSQLite ShortRead stringr]; };
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|
metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.16.0"; sha256="14q96wsya19zv0ag06s9sqjq9azrh81kfim88aqvw8mp0vvc8k0x"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; };
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|
metahdep = derive2 { name="metahdep"; version="1.32.0"; sha256="0qnimqg6zj2hq5a9ak39z3bv9da48k1191267rdbfn5rza910hwh"; depends=[]; };
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metaseqR = derive2 { name="metaseqR"; version="1.14.0"; sha256="1h5gg9dzn91si1ir2xbv8fsf9wdih8wxl01q83279x56ghf1sy8y"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; };
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|
methVisual = derive2 { name="methVisual"; version="1.26.0"; sha256="1dkknkr6z10i2ljfmgjb4sxn9vv46g26cf9nc7s47rbxbycjvlqw"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; };
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|
methyAnalysis = derive2 { name="methyAnalysis"; version="1.16.1"; sha256="0rhjn2ql3c5m6ayj5mmgs8fb348nbxdsn2717x44a7aj3zamn9py"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; };
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methylKit = derive2 { name="methylKit"; version="1.0.0"; sha256="1fxyarvz0vi4wbki70gqb1nwrmz6m7kgsvqh1am4j8m46qzv1h9a"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; };
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methylMnM = derive2 { name="methylMnM"; version="1.12.0"; sha256="15669zficwabd3wdl3b24q3hal7d587k5lzg8s6sr3f3f9w2lyqf"; depends=[edgeR statmod]; };
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methylPipe = derive2 { name="methylPipe"; version="1.8.0"; sha256="1mfgxz43vxksvmwywh65q5v9jlcs5a43rb9w8zvjfgpg0zg8l46l"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
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methylumi = derive2 { name="methylumi"; version="2.20.0"; sha256="02p1wwgz7w7qvsn08mw4ffrqwsi0kkahs7sdlm6ll0r7q3z03pkk"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
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mgsa = derive2 { name="mgsa"; version="1.22.0"; sha256="1iwlqjs70hcgcr3m1k93xkl7xbqc9gw7k5ik9j9yhzsd7s8zxvpi"; depends=[gplots]; };
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miRLAB = derive2 { name="miRLAB"; version="1.4.0"; sha256="0lgkm4arfc37z11ilfc0wp8m4zm1dpigr01757r82ksaxc2iqv54"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; };
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miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.2.0"; sha256="0y4dmd6mlwyhi9k4nqfzg5x71k3x08cg0n4j0zrdqf5dby68yc3m"; depends=[AnnotationDbi DBI miRBaseVersions_db]; };
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miRNApath = derive2 { name="miRNApath"; version="1.34.0"; sha256="01yb8n3i5jkpmy5ksq8lrllaspdc6lyixz7zzndzrwrk0gibph3b"; depends=[]; };
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miRNAtap = derive2 { name="miRNAtap"; version="1.8.0"; sha256="0ap5c02m7j8mvvkxcw1mkxkwx7n8cslam1q4kj93pfpnn9bk2ll1"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
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miRcomp = derive2 { name="miRcomp"; version="1.4.0"; sha256="0j07g3cvazxafvi3m0vp4rscivxydihdjkjy0fzqaxbgin2p35gj"; depends=[Biobase KernSmooth miRcompData]; };
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microRNA = derive2 { name="microRNA"; version="1.32.0"; sha256="0yyldx2icbr36m6n0kf1f156ixm0hbjnyzrw535d36sxhy1pplpb"; depends=[Biostrings]; };
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minet = derive2 { name="minet"; version="3.32.0"; sha256="1qk2xr88d7hc3ymg23byaqmnx3d2spddzwr81n48hwala8sy7apk"; depends=[infotheo]; };
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minfi = derive2 { name="minfi"; version="1.20.2"; sha256="1dj88a1mv74fp9pv3iqmvqvgvr91mwdwan6qzx0svi4gh5g5hx3n"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter data_table genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
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mirIntegrator = derive2 { name="mirIntegrator"; version="1.4.0"; sha256="0iq3223i8hl7jsgbnzz748j253n6rjvxw374g5bk1p4b0n4dcj5v"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; };
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|
missMethyl = derive2 { name="missMethyl"; version="1.8.0"; sha256="03wy0j8jr855kw87w7l4hd6cbk8n6iamyqnw0z2r9hf4dwd54v5v"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; };
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mitoODE = derive2 { name="mitoODE"; version="1.12.0"; sha256="0jcc4rzc64sadanwgrg48dcsk3ibwsxka53h3wiz3yf8mlzq605a"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; };
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|
mmnet = derive2 { name="mmnet"; version="1.12.0"; sha256="0fb9g4cizh0zf9gqwasygsc59njj6pffrmr5f0v96fmj3gvgfs1k"; depends=[Biobase flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; };
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|
mogsa = derive2 { name="mogsa"; version="1.8.0"; sha256="1lw39c31n1k93i9a4rdpw03s3b638yplq8xlv4n6ac4bjy14q6l6"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
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|
monocle = derive2 { name="monocle"; version="2.2.0"; sha256="05nhkk7n6pz2p5gmr3siwawcbjmhcswqs49xx16ycf7bqj2hbfn7"; depends=[Biobase BiocGenerics cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix reshape2 slam stringr VGAM]; };
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mosaics = derive2 { name="mosaics"; version="2.12.0"; sha256="01fvc0qc3fd8pjh6qjf9c1k4z0427gfx2li3jd7xp05nwyfbs68d"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; };
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motifRG = derive2 { name="motifRG"; version="1.18.0"; sha256="1pa97aj6c5f3gx4bgriw110764dj3m9h104ddi8rv2bpy41yd98d"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; };
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motifStack = derive2 { name="motifStack"; version="1.18.0"; sha256="1h4qw89wqnl0r6drfi26h6jnvpjh5r45qc588g18rplgw3ckjmfz"; depends=[ade4 Biostrings grImport MotIV scales XML]; };
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motifbreakR = derive2 { name="motifbreakR"; version="1.4.0"; sha256="14mgwligzfwlg9asdr125wzg15j1rhg29xsv58r802q6r2prgryy"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; };
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msPurity = derive2 { name="msPurity"; version="1.0.0"; sha256="0az2g69djc9kjzj10wgl0qpyyng6a8hzwa9ppwg66yj8da09x8zl"; depends=[doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 sapa stringr]; };
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msa = derive2 { name="msa"; version="1.6.0"; sha256="0i3cx1s5gg24dyik1mclhbpiqhxakc63fiazihdxn4k0bdg8ca9p"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
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msmsEDA = derive2 { name="msmsEDA"; version="1.12.0"; sha256="1l8clsma1rd322dfjr14klx0w5gjgn7fg21m4d4cyayyb44vsf1s"; depends=[gplots MASS MSnbase RColorBrewer]; };
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msmsTests = derive2 { name="msmsTests"; version="1.12.0"; sha256="12amngakmr4h3hl0nbladynn51r2zndcd0kxkm5cyhd90rrzs18i"; depends=[edgeR msmsEDA MSnbase qvalue]; };
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multiClust = derive2 { name="multiClust"; version="1.4.0"; sha256="1g8j8ad61njs1zbc2vrwbzp4lliapamzy9bd0cyhh520b55ziy8q"; depends=[amap cluster ctc dendextend mclust survival]; };
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multiscan = derive2 { name="multiscan"; version="1.34.0"; sha256="12ld46bm58lr95w7v7ynyhl6mw1ws9gbdr7afjdrs7ba4313qa0j"; depends=[Biobase]; };
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multtest = derive2 { name="multtest"; version="2.30.0"; sha256="0q302f3yf9v7mlq2kib7ynq015d5f94jrsk9drkp5vq0z5j0h3sw"; depends=[Biobase BiocGenerics MASS survival]; };
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|
muscle = derive2 { name="muscle"; version="3.16.0"; sha256="0rkv1gdbpk8sss1nlq19y7p2kba8hy3dh3bx5x1rzn9cn0qn16ig"; depends=[Biostrings]; };
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mvGST = derive2 { name="mvGST"; version="1.8.0"; sha256="19sn5rg3ny1ch5ka8agssn048wgj764cspzzj0pn3vf025qa9pbv"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; };
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mygene = derive2 { name="mygene"; version="1.10.0"; sha256="1qir3d378plqxwkz006vi00qb1zgj2m13sjcaxcclcg59fh1fh9m"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; };
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myvariant = derive2 { name="myvariant"; version="1.4.0"; sha256="0xlxcs0vqlwjqiwlycfznvj8n7sm54m3y287ndijs0461qkm2xil"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; };
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mzID = derive2 { name="mzID"; version="1.12.0"; sha256="1zn896cpfvqp1qmq5c4vcj933hb8rxwb6gkck1wqvr7393rpqy1q"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
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mzR = derive2 { name="mzR"; version="2.8.1"; sha256="0ipmhg6l3pf648rdx5g2ha7l5ppd3cja6afxhdw76x8ga3633x0r"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; };
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ncdfFlow = derive2 { name="ncdfFlow"; version="2.20.2"; sha256="0s8gd6wf20zxi8vs1bl1d75rmssgvkrgrndzxn56g8cxdnyg95hl"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
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nem = derive2 { name="nem"; version="2.48.0"; sha256="00x0hb1h95dh9mg3wj89l3g2fh9hdbqlisylvmlmf7dzngcyn2c3"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; };
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netbenchmark = derive2 { name="netbenchmark"; version="1.6.0"; sha256="1f27n82kzwwqcpx71rv824lj1h9723vf9cjcp1djh6d8jpx6yx3a"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; };
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netbiov = derive2 { name="netbiov"; version="1.8.0"; sha256="1yz9q8s1ls6944rwbmjmk6bzg0d16sxr93sw49vlzjqg1xydfc0x"; depends=[igraph]; };
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nethet = derive2 { name="nethet"; version="1.6.0"; sha256="04kpkff1kvxq060jx1fqg5vjszipzyjlshmr23ybm40lj31nl92k"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; };
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netprioR = derive2 { name="netprioR"; version="1.0.0"; sha256="1ilpjkwnl81rv2xn2k3174jqp9jidm0fn4aajfybz0fbhzxi5r8k"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; };
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netresponse = derive2 { name="netresponse"; version="1.34.0"; sha256="15gq1x7ksmr5slbbdv0cfpk5nkibpq0b6mkpda0f4rg58zq0nsb6"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; };
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networkBMA = derive2 { name="networkBMA"; version="2.12.0"; sha256="1ccs0ardxa7d6b8jlkrnrs2idbf3bg7610zwjdg3p25da1f9gpn0"; depends=[BH BMA Rcpp RcppArmadillo RcppEigen]; };
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|
nnNorm = derive2 { name="nnNorm"; version="2.38.0"; sha256="1mdgbmdhqc1mjhjjhx8g0x6jy4pzza13f083c7wb9hhh7mi5w5jp"; depends=[marray nnet]; };
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nondetects = derive2 { name="nondetects"; version="2.4.0"; sha256="06jraad50df9kw4sl44qs3km1ba4nfvqkkzf0ghmrs624msyl4xx"; depends=[Biobase HTqPCR limma mvtnorm]; };
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|
normalize450K = derive2 { name="normalize450K"; version="1.2.0"; sha256="0h9dqm1n7kmaydjxhn9m9gw2kfwr98aa3nil32x32qsx9rsf5yk0"; depends=[Biobase illuminaio quadprog]; };
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normr = derive2 { name="normr"; version="1.0.0"; sha256="0ad2nbyngpigx7gy9nnpifjcz33bd8vkpggjl80vp5w4swj9vkrp"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; };
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npGSEA = derive2 { name="npGSEA"; version="1.10.0"; sha256="1w4v4b53rdg4g8zw8hbcvw3z2x7i3f4kn9i68ql7f9p7ba21qr2p"; depends=[Biobase BiocGenerics GSEABase]; };
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|
nucleR = derive2 { name="nucleR"; version="2.6.0"; sha256="0aa2hi3pscjypys1zf1qdzzxsxkaj7myrja3932kb2vjnydk6da7"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
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|
nucleoSim = derive2 { name="nucleoSim"; version="1.2.0"; sha256="0j65i9yah3v3iidrndka05rfabgah7yk2d2fg1rqkw2nkyv47shk"; depends=[IRanges S4Vectors]; };
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nudge = derive2 { name="nudge"; version="1.40.0"; sha256="0ggbj3bjxjklw6944icgjcy3mgcly6b7d5cl68yn1cyagmdfdl63"; depends=[]; };
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occugene = derive2 { name="occugene"; version="1.34.0"; sha256="0qavm0wkhaq2vlrbqwb5yr79251m9nxlv4kj3bhhkdf0azzjpxmp"; depends=[]; };
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odseq = derive2 { name="odseq"; version="1.2.0"; sha256="1bf9s0vvgvq44p37396jj7wis6isj07mips52hmq299s7r5zl6gp"; depends=[kebabs mclust msa]; };
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oligo = derive2 { name="oligo"; version="1.38.0"; sha256="1lpdqyraamyqdz9dc56xpdph4sbx7fa4ngvdg407nblbqxbyyz3d"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
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|
oligoClasses = derive2 { name="oligoClasses"; version="1.36.0"; sha256="0cs8hkiz1rmp17hf1zsc2g1zwq7ah7x3bxbjapwgy6s12f68x2g9"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
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|
omicade4 = derive2 { name="omicade4"; version="1.14.0"; sha256="0z6fvr4qq2bi0lpprs5fwv7lg501pgq648pd9af6w0km5ij7hrcf"; depends=[ade4 made4]; };
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|
oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.40.0"; sha256="0x1g8f2aw95yvkc2mr9998wk3xmrzraaw4zp95kp21avv196kswh"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; };
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|
ontoCAT = derive2 { name="ontoCAT"; version="1.26.0"; sha256="1p6kgdv9h9hd87ccbvgz8l8vkmn7j9bvmq4wjvz4si5pwjghsz4l"; depends=[rJava]; };
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|
openCyto = derive2 { name="openCyto"; version="1.12.1"; sha256="07nv87c578dgacld01dzvnj8sba5f6yll5d3v3754zswnl7glk4j"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
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|
oposSOM = derive2 { name="oposSOM"; version="1.12.0"; sha256="1hfyr7sbwr9wyhan71mr8l22qkl5q5pm09n6rbbsy1z3wfd4yj9k"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
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|
oppar = derive2 { name="oppar"; version="1.2.0"; sha256="12bdfckimhrwx0zvgjm0lq320h5b6n8a8gwj50kz75fdqg7zjw0v"; depends=[Biobase GSEABase GSVA]; };
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|
pRoloc = derive2 { name="pRoloc"; version="1.14.6"; sha256="15g28asmk65vzrdm9cnq083vr7vcl76z2zw7j61mnlb73z1y3vqg"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class dendextend e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
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|
pRolocGUI = derive2 { name="pRolocGUI"; version="1.8.2"; sha256="0zw89sdy0y1hxydkglscn3xx29yna17a83w1c73ps4q30laybl6a"; depends=[Biobase dplyr DT MSnbase pRoloc scales shiny]; };
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|
paircompviz = derive2 { name="paircompviz"; version="1.12.0"; sha256="0mwpgds5blylhh4ac24flzvpdp8xvky1yidmfafk002yf6pdk8i0"; depends=[Rgraphviz]; };
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|
pandaR = derive2 { name="pandaR"; version="1.6.0"; sha256="13fs3qa42z9bh8wfbfbfzhzq9z2rj6436caqd1flx7m4ibbww9fc"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; };
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|
panp = derive2 { name="panp"; version="1.44.0"; sha256="1pj9pgknfmrq8fnyk30hkn0mz1f3n6lv1dvvs7nywd8702wfyxhv"; depends=[affy Biobase]; };
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|
parglms = derive2 { name="parglms"; version="1.6.0"; sha256="0lqzvy0q6nlzm9k3ar70mqrvlkiw2ks2fi07bqcccmspvvkd25a6"; depends=[BatchJobs BiocGenerics doParallel foreach]; };
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|
parody = derive2 { name="parody"; version="1.32.0"; sha256="04n9ngqmdlm44bkhgwyk7a9rky7dcm8h3jy3m6nhz8lm6k6q72h3"; depends=[]; };
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|
pathRender = derive2 { name="pathRender"; version="1.42.0"; sha256="18bdli1sbb32kdza10lzf1mfd0dwlgkmbha20bjvcpd9jxxhl79z"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; };
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|
pathVar = derive2 { name="pathVar"; version="1.4.0"; sha256="17332arpxdn9sh3lknrdnjc7dlp6qzjp0px82grkvfw9nqs0d4m3"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; };
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|
pathifier = derive2 { name="pathifier"; version="1.12.0"; sha256="132yhr43y88kz2qaadkw3hxbrjawk76hiy0h7y72h33zmz4l5z26"; depends=[princurve R_oo]; };
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|
pathview = derive2 { name="pathview"; version="1.14.0"; sha256="1nlfh2i1gj1f35z9v95yajvpp1p60z0pgjbc9xyvdg82s58ggjvd"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; };
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|
paxtoolsr = derive2 { name="paxtoolsr"; version="1.8.0"; sha256="09z7w9mp2f710y5rf83gqw490axvsg6xgqq05n44r21741rblxdf"; depends=[data_table httr igraph plyr R_utils rJava rjson XML]; };
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|
pbcmc = derive2 { name="pbcmc"; version="1.2.2"; sha256="0p7gacnbgf65iz9h7hfyybyak595ykl4xlfv4jvz4hpigbq8alzc"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; };
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|
pcaExplorer = derive2 { name="pcaExplorer"; version="2.0.0"; sha256="00zak0j907wrpr4ng6lxj4fki3lg8kgx6j8y7vxiib7dd01sw2fp"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; };
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|
pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.18.0"; sha256="1xh7dwskik3q3npwhz2jgmpadh59q04hz6rd6fpph470d98213pm"; depends=[AnnotationDbi Biostrings ellipse]; };
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|
pcaMethods = derive2 { name="pcaMethods"; version="1.66.0"; sha256="18mawhxw57pgpn87qha4mwki24gqja7wpqha8q496476vyap11xw"; depends=[Biobase BiocGenerics MASS Rcpp]; };
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|
pcot2 = derive2 { name="pcot2"; version="1.42.0"; sha256="0rqkclr272ss61nlcay1wk0fy904bgw9rkryx236p7087kmjbasi"; depends=[amap Biobase]; };
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|
pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.38.0"; sha256="1vhb37y8mfravdlvvsdnnxw3yjx6mf6x9wkj140s3bmrjyaabyxa"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
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|
pdmclass = derive2 { name="pdmclass"; version="1.46.0"; sha256="1g88p9jrhllqxjy6043gm34h1lmyqxqyvifdlxz2afrc5h0g3rs8"; depends=[Biobase fibroEset mda]; };
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|
pepStat = derive2 { name="pepStat"; version="1.8.0"; sha256="1r7a10dhicq2lhk3g1yqz6q5wv0a9dwsl7pvxzhds1ix980a4rm9"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; };
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|
pepXMLTab = derive2 { name="pepXMLTab"; version="1.8.0"; sha256="0bgr2v9hj6lvwn2r1m5bfa20bxbk1zibysmr2cnzr8qxvlcpi354"; depends=[XML]; };
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|
phenoDist = derive2 { name="phenoDist"; version="1.22.0"; sha256="0945wxmf1dr6hp8pjc995nhisdnzc0rjwlpkfkw93dn10gn947w8"; depends=[e1071 imageHTS]; };
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|
phenoTest = derive2 { name="phenoTest"; version="1.23.1"; sha256="1nlgzzh8ddrk943vgna9ngdha60zmpn8zmbb4sxy8sya4n1z097v"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; };
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|
philr = derive2 { name="philr"; version="1.0.0"; sha256="0k0ck7miirmwincp1fxcmdgfbcfdvyhgpmgxv5d4nlsasr3sf9n5"; depends=[ape ggplot2 ggtree phangorn tidyr]; };
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|
phyloseq = derive2 { name="phyloseq"; version="1.19.1"; sha256="19vq14gqr5wwkgbp1qdvz704ilhwvdfn7m8yzfcr6xcdxxks0gad"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; };
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|
piano = derive2 { name="piano"; version="1.14.5"; sha256="1y6vy7fh23mpa2r65mhygaj27zwjl9v3khkff80lsaax0cc287s7"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; };
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|
pickgene = derive2 { name="pickgene"; version="1.46.0"; sha256="0lcgfw8w08akrkqb74ibavav9ph5pd1daa3zbdrxkycxqxylwcmm"; depends=[MASS]; };
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pint = derive2 { name="pint"; version="1.24.0"; sha256="1q0j037z4rq7z2yd76rnspg0xarbnblbhssm338hvh84l3kyhsvj"; depends=[dmt Matrix mvtnorm]; };
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|
pkgDepTools = derive2 { name="pkgDepTools"; version="1.40.0"; sha256="1r1z4ksjjd0av85jwfvawfv4j5jkjvglf03h55zixg8iwhcgrmz1"; depends=[graph RBGL]; };
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|
plateCore = derive2 { name="plateCore"; version="1.32.0"; sha256="123r9qcqan3bcqpzgw34dnrf1dgl28x01clc0j4rr61zxakapbq1"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; };
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|
plethy = derive2 { name="plethy"; version="1.12.1"; sha256="0q8xqk123rm1sj4knljaaz97hl0pshf8m7f99kggna0hc33hgz60"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; };
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|
plgem = derive2 { name="plgem"; version="1.46.0"; sha256="16g433rh7avqml7dlil8hm8a1ksmgfansck26r3hcg2ic9ys1gly"; depends=[Biobase MASS]; };
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|
plier = derive2 { name="plier"; version="1.44.0"; sha256="0iyazrna17qc5pk4lfxqmzwhhjxpjnli8ks6v7xf8c620ydrfdlm"; depends=[affy Biobase]; };
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|
plrs = derive2 { name="plrs"; version="1.14.0"; sha256="084vc0570ccl1hbp3gjp6mdk1x6qzxipyzwdh76ffahafg1lyk5s"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; };
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|
plw = derive2 { name="plw"; version="1.34.0"; sha256="1r5b2rpzhl5xj7477saac2j1qjdrcbdd3hrsi01hfsapczggz7sl"; depends=[affy MASS]; };
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|
pmm = derive2 { name="pmm"; version="1.6.0"; sha256="19v4cbc6ws84pa5byxam3cgdbmdd6qm44m1x62iz9hsmbx38fsg6"; depends=[lme4]; };
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|
podkat = derive2 { name="podkat"; version="1.6.1"; sha256="01kk7j2kvb15803dgyszjardy2mb8hii7f2c08x5whbprajx1h06"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
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|
polyester = derive2 { name="polyester"; version="1.10.1"; sha256="1z011zvj1jzr2diznp528skhxafngk26i080fvyc9vpviabpbl3l"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; };
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|
ppiStats = derive2 { name="ppiStats"; version="1.40.0"; sha256="1ymyn5gf2879gb20q9aczw056ib5c7c0lhpap6f4iyxivz9lpbhq"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; };
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|
pqsfinder = derive2 { name="pqsfinder"; version="1.2.3"; sha256="0d497y179r9yk43sh03vbanv1ilpp43a0zxj33fjnmm0cfc6w8cx"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; };
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|
prada = derive2 { name="prada"; version="1.50.0"; sha256="1nng189vl5xykba2gahmf88sb5fx9v980bhpy419anif26hx5fdl"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; };
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|
prebs = derive2 { name="prebs"; version="1.14.0"; sha256="0jkvpa5dvgvdln8bzd3cf4i5ki3mpf7n9353x0ba482p1qk3ip5z"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; };
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|
predictionet = derive2 { name="predictionet"; version="1.20.0"; sha256="0c988g47nw91rv62kc6rnxvmym7xxfr4gdlj339wy70w52yjf8vk"; depends=[catnet igraph MASS penalized RBGL]; };
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|
preprocessCore = derive2 { name="preprocessCore"; version="1.36.0"; sha256="1n8y12q7145f385gm2k3c6y3vwvin7jlb47la4mnl7mar6pq9kmp"; depends=[]; };
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|
proBAMr = derive2 { name="proBAMr"; version="1.8.0"; sha256="1kdaxyx0y3p4zvs589q4svb8h1xjsw2sccm3287rdj6a6wp4z5km"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; };
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|
proFIA = derive2 { name="proFIA"; version="1.0.10"; sha256="18ncxwzgyvq4ks2y0sqvm01fsw8xfvri9h5nm0446ailjwg64mj9"; depends=[Biobase BiocParallel FNN minpack_lm pracma xcms]; };
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|
procoil = derive2 { name="procoil"; version="2.2.0"; sha256="1ffjrn2fg2z48c5lrabma34zyvm75fqngndxfd4g216znyzll2dn"; depends=[Biostrings kebabs S4Vectors]; };
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|
profileScoreDist = derive2 { name="profileScoreDist"; version="1.2.0"; sha256="1b1mvh6aw9k72qxjslb5qa42l70y9zz4r49kyxf48nfm8hgs2cj7"; depends=[BiocGenerics Rcpp]; };
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|
prot2D = derive2 { name="prot2D"; version="1.12.0"; sha256="0pdwkyqi0lplr12ayj9rrj09xhdbm7sjn821k4ilfbnxic3lldf2"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; };
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|
proteinProfiles = derive2 { name="proteinProfiles"; version="1.14.0"; sha256="0xika21c4fadh4sxbn7kqjmmqpg85qxl3aynwfvl0qmk8xjpvdin"; depends=[]; };
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|
proteoQC = derive2 { name="proteoQC"; version="1.10.0"; sha256="0396qp0jzyz1ss3ahcxbqpxgsn1rwiy87zmrfr3wl22gs44vijrv"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; };
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|
psichomics = derive2 { name="psichomics"; version="1.0.8"; sha256="15v689jcc8d107cp9chzyh4bx01x5639lf474bl2ac9jlqca3mb3"; depends=[AnnotationHub data_table digest dplyr DT fastmatch highcharter httr jsonlite miscTools plyr R_utils shiny shinyBS shinyjs stringr survival Sushi XML]; };
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|
psygenet2r = derive2 { name="psygenet2r"; version="1.7.4"; sha256="0553fbkbfylqk7z4rw7m4sdyddgwh5qv0rgkp0crnj0cp49cmvnc"; depends=[BgeeDB Biobase BiocInstaller biomaRt ggplot2 igraph labeling RCurl reshape2 stringr topGO]; };
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|
puma = derive2 { name="puma"; version="3.16.0"; sha256="0692cvv6v58dpi0phrh5zfraw090mc83cwpnqibgi3w7kigq5zl7"; depends=[affy affyio Biobase mclust oligo oligoClasses]; };
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|
pvac = derive2 { name="pvac"; version="1.22.0"; sha256="1hhd87fh688r03l15f1m8rsaglcnqm6lzkb1lg002lzm8ghnzq81"; depends=[affy Biobase]; };
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|
pvca = derive2 { name="pvca"; version="1.14.0"; sha256="1z71i79hq8n139xpqvwz03r8arpscimy4p8ms77q7q3pcxb0rs94"; depends=[Biobase lme4 Matrix vsn]; };
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|
pwOmics = derive2 { name="pwOmics"; version="1.6.0"; sha256="1iq3aw9l2r3fc0kv0pj70yh8c729rb39v51hcy1bc5syfasr7shr"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
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|
qcmetrics = derive2 { name="qcmetrics"; version="1.12.0"; sha256="0s2p02j1v41hg5yrryi7lf819hhfv1wrdi58wxxff4m69qzzypzg"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
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|
qpcrNorm = derive2 { name="qpcrNorm"; version="1.32.0"; sha256="1q7w247r2ac4nqr262mc15q54ak0zdpw6a1sl0p7hiqcj1bc60f8"; depends=[affy Biobase limma]; };
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|
qpgraph = derive2 { name="qpgraph"; version="2.8.3"; sha256="02isqzh92dw6xr8wjb2nigfkk5lxmywm09p5ywffx4fvjl1bvs4f"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
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|
qrqc = derive2 { name="qrqc"; version="1.28.0"; sha256="0yl5q6c2yfizc9kaxdksc0zyl88xyy2i5m9qhcjkvzw71nlhihlj"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; };
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|
qsea = derive2 { name="qsea"; version="1.0.3"; sha256="1r3b90ibhvrg98xji81rdfazvk7a2ib622dga7gvpqax0rs1np8i"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; };
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|
quantro = derive2 { name="quantro"; version="1.8.0"; sha256="0y33mx9nvi7k2w6qzal2z0jav1c68m9rkiqx7g22rjhisg2vynvi"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; };
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|
quantsmooth = derive2 { name="quantsmooth"; version="1.40.0"; sha256="0bxy8rj5bflk9qv672rn9yr9lmk8z5a5lakgcamisbf28s6d3qkm"; depends=[quantreg]; };
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|
qusage = derive2 { name="qusage"; version="2.6.1"; sha256="1npv86c0z2ka2r3w4dydf843lhx6fsyyhxx268dnpv604rm0f662"; depends=[Biobase limma lsmeans nlme]; };
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|
qvalue = derive2 { name="qvalue"; version="2.6.0"; sha256="1dijh11v1kr29gnikq09pkdvm3qwmp1a406ahx9l4j6mgn8hlsfq"; depends=[ggplot2 reshape2]; };
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|
r3Cseq = derive2 { name="r3Cseq"; version="1.20.0"; sha256="039p2chdxcikjd58ighdd5vh6hp9mb3w169az0m9asrys4wgkps0"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; };
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|
rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.14.0"; sha256="1a3c1yk57rmmsxwfkmgjvkfh3vs7aq71h6iwcihyvp2b15xdg8wp"; depends=[data_table XML]; };
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rCGH = derive2 { name="rCGH"; version="1.4.0"; sha256="0hh36zfmy7284528lfgf103r7f0839hxzr2z75gmsjjvr3c4q8vb"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
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rDGIdb = derive2 { name="rDGIdb"; version="1.0.0"; sha256="0ix6j1m9bcllblwivv0i3m5mns787kpzpmx8kvb8bw4qd3lb09hq"; depends=[httr jsonlite]; };
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|
rGADEM = derive2 { name="rGADEM"; version="2.22.0"; sha256="1n673zr7g27fdksikk945krc539bnyvi3awabaifc57ldzj0hz1v"; depends=[Biostrings BSgenome IRanges seqLogo]; };
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|
rGREAT = derive2 { name="rGREAT"; version="1.6.0"; sha256="1q56cg6crgr95myk8pd7dmrhblcm4yl0n21dy126c0h38i6q5f5i"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
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rHVDM = derive2 { name="rHVDM"; version="1.40.0"; sha256="1v410qv0djpf6cd90fjaidlifxcfv3l7s925ni9q4dqk8dr8x4y3"; depends=[affy Biobase minpack_lm R2HTML]; };
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|
rMAT = derive2 { name="rMAT"; version="3.24.0"; sha256="1s6lq7pc5g93qvwq79va9k6b2z2z65pf5hyya9bdjrr7q6bgd6fd"; depends=[affxparser Biobase BiocGenerics IRanges]; };
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rRDP = derive2 { name="rRDP"; version="1.8.0"; sha256="1z8m3036sarciw69pqhl5ib7prilbbwx43xv597byq03n45fgawq"; depends=[Biostrings]; };
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rSFFreader = derive2 { name="rSFFreader"; version="0.22.0"; sha256="1n9rzd3lpjzjbwpx1jvb68yymkr6k01y6a2jjyf7cdpdd9mpyg8s"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; };
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rTANDEM = derive2 { name="rTANDEM"; version="1.14.2"; sha256="1c9y3lf0ksmck7zw2qm6r3mnpgrmf6gpq471bzpyx8443cs7fj7h"; depends=[data_table Rcpp XML]; };
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|
rTRM = derive2 { name="rTRM"; version="1.12.0"; sha256="14ma36hx7hzaz903dzbmhzmipqlr3lnibjxr5y518wsml4ih70gi"; depends=[AnnotationDbi DBI igraph RSQLite]; };
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|
rTRMui = derive2 { name="rTRMui"; version="1.12.0"; sha256="0slp9yggz7yfhpil540k6d1ppkbmmbks1ssacj6xf5h4yksc6zh8"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; };
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|
rain = derive2 { name="rain"; version="1.8.0"; sha256="1gqkh3rjr3h6l8y3s9rdc1j4ivnpx1hmhnlp6ay63y99q4yxgj8c"; depends=[gmp multtest]; };
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|
rama = derive2 { name="rama"; version="1.48.0"; sha256="0zmmilwhvh51fg0bi6jid27z38xr5yyqa0xa5kjwq3xh9pnrg17l"; depends=[]; };
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randPack = derive2 { name="randPack"; version="1.20.0"; sha256="0wby3nwhj5d4r98p14qfl3p2z4rb73bbpfh68zf75gjaqvkm0j25"; depends=[Biobase]; };
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|
rbsurv = derive2 { name="rbsurv"; version="2.32.0"; sha256="1n067rk8jiwf56rm22h8jfngwg75hp0xg7hlx86yzsdffpkmmbbv"; depends=[Biobase survival]; };
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|
rcellminer = derive2 { name="rcellminer"; version="1.6.0"; sha256="1lmghcwrwdwknpsv2cq47yyaw09ishb0s7i29zs5c4ksvpmdhw5h"; depends=[Biobase fingerprint gplots rcdk rcellminerData shiny stringr]; };
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|
readat = derive2 { name="readat"; version="1.0.0"; sha256="0l89x1pb1c8kypdh2ka9bp9jwq8j19p34qnf2zzm34361amh90wz"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; };
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|
reb = derive2 { name="reb"; version="1.52.0"; sha256="1cg88gglzr5r5m0bq51fz2xabhrlk9rybvrbbdnd7ph2ss1jxkis"; depends=[Biobase idiogram]; };
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|
recount = derive2 { name="recount"; version="1.0.17"; sha256="1ffvpkzafqhy75j8r39l91lrm321yq73w5a929nngk82lwwd6dcf"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; };
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|
recoup = derive2 { name="recoup"; version="1.2.0"; sha256="1n5af8fbly8qdwn4ggysd01s15l26lkw9dh1mnmimhhi6wzz1brj"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; };
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|
regionReport = derive2 { name="regionReport"; version="1.8.2"; sha256="0q59fhxa9a1cr75c6m4qmgpxrv8q1jj0k1zm76xbj6anri5cmprd"; depends=[DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; };
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|
regioneR = derive2 { name="regioneR"; version="1.6.2"; sha256="0mvwk2yjsdxda7w6f82dbj91i0zrr95ipglfyw9ndhl2ki8dka0i"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer]; };
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|
regsplice = derive2 { name="regsplice"; version="1.0.0"; sha256="0kl8xsz4jph4jrj3yfnfaymhsrrmcxgfjjanbc3yfv6kj5pwjfcp"; depends=[BiocParallel edgeR glmnet limma S4Vectors SummarizedExperiment]; };
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|
rfPred = derive2 { name="rfPred"; version="1.12.0"; sha256="1bc5rj00mlayahqb6vla9ghq15676fscj9kqagp1x6ivpgxqkl65"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
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|
rgsepd = derive2 { name="rgsepd"; version="1.6.0"; sha256="047svzia4f5qhcr6h0p0hfzshzmissdm9hg0pp4mfd6051nkdv5x"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; };
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|
rhdf5 = derive2 { name="rhdf5"; version="2.18.0"; sha256="0pb04li55ysag30s7rap7nnivc0rqmgsmpj43kin0rxdabfn1w0k"; depends=[zlibbioc]; };
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|
riboSeqR = derive2 { name="riboSeqR"; version="1.8.0"; sha256="1196qh0vwnfwshccl725mbkf698dlyz4658cq7kpvyrpv56z5l90"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
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|
rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.32.0"; sha256="0bxlc5lwxlnlbp2qj3gsdvbrb96c9dhmp3fjdnpdcjwbvwh9a2jn"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
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|
rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.4.0"; sha256="1q1lsf75nbwkn91lgwkpx4lsmg94v1lbwzq7glwai4766xkvd2nb"; depends=[RColorBrewer]; };
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|
roar = derive2 { name="roar"; version="1.10.0"; sha256="1hp2542vi0jqxqqin6gb5py5hvl06sn0x9ks4lb371sw0smps7ak"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; };
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|
rols = derive2 { name="rols"; version="2.2.5"; sha256="0xc467hd2jzdhw73a97lvj5m2hv10w06l11yrqff13gkhch4d6mi"; depends=[Biobase httr jsonlite progress]; };
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|
ropls = derive2 { name="ropls"; version="1.6.2"; sha256="0piwi6l83a7lcgsv2561d71y7hm3j3g2ax6vq2h0izf6qrzj4nvy"; depends=[Biobase]; };
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|
rpx = derive2 { name="rpx"; version="1.10.2"; sha256="1814f3jdmbj2yyv8ll7lfnc6bcwbv5hn9i7wydf2xzvpi2954ijr"; depends=[RCurl XML]; };
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|
rqubic = derive2 { name="rqubic"; version="1.20.0"; sha256="1d5zbicb5lsqvbb0djaixi9i05q2caysa1pxnlbvf4pc3pjl2bzh"; depends=[biclust Biobase BiocGenerics]; };
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|
rsbml = derive2 { name="rsbml"; version="2.32.0"; sha256="13y47fkrq80c9s0y7rrvynr6y5df9cxr0i9zxksm27fvk7bq2rzh"; depends=[BiocGenerics graph]; };
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|
rtracklayer = derive2 { name="rtracklayer"; version="1.34.2"; sha256="1j3cyvg1wg1d9l0lkcjk3jn7pb96zi17nd1qsa5lglsimja19mpl"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
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|
sRAP = derive2 { name="sRAP"; version="1.14.0"; sha256="04nnkxb59s9qfv8kyvqc5kw8hd60c0qnpp9v8rl2iash3yng8xxb"; depends=[gplots pls qvalue ROCR WriteXLS]; };
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|
sSeq = derive2 { name="sSeq"; version="1.12.0"; sha256="0pawi0svlz3cfq14f81lkvfawa5vd59cbvk4nxgwpwwk1ldxrdiq"; depends=[caTools RColorBrewer]; };
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|
safe = derive2 { name="safe"; version="3.14.0"; sha256="1n2i36gg8iykcaxy4347il2hbjd4lzrygyzibj4l9a7xprfb05y0"; depends=[AnnotationDbi Biobase SparseM]; };
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|
sagenhaft = derive2 { name="sagenhaft"; version="1.44.0"; sha256="1j6y4bj156szbf454m4zmlcg1idzxq2vzis2vjl5awpm0jvgz6sa"; depends=[SparseM]; };
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|
sangerseqR = derive2 { name="sangerseqR"; version="1.10.0"; sha256="058la6zb2prgnf0vwy8fc4p7n13zpm1gr7fhsy4m9qknd4mdcvkz"; depends=[Biostrings shiny]; };
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|
sapFinder = derive2 { name="sapFinder"; version="1.12.0"; sha256="1fybnkzjg2jfjc4qzcr96ma75389x928110a2nmq8326xknwd6f1"; depends=[pheatmap Rcpp rTANDEM]; };
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|
savR = derive2 { name="savR"; version="1.12.0"; sha256="0h32mrnwls8bgq0h71vzhr29f56hpl1hgxi7sycz7hmzp9pxcfh8"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
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|
scater = derive2 { name="scater"; version="1.2.0"; sha256="0pambafir3aqpgk7kdq5i2pn0278d97bn2qb9712c0jivw363whf"; depends=[Biobase BiocGenerics biomaRt data_table dplyr edgeR ggbeeswarm ggplot2 limma matrixStats plyr reshape2 rhdf5 rjson shiny shinydashboard tximport viridis]; };
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scde = derive2 { name="scde"; version="2.2.0"; sha256="1yhg9gd8qphnfk5x93hsxqhw6mc2v6kdrw1wlgb93njic0cfmv7b"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; };
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|
scran = derive2 { name="scran"; version="1.2.2"; sha256="02jlxxm3nwgdx3v4dxw7041c4klfalpbqx0qwj25pk4f0fn9xrak"; depends=[Biobase BiocGenerics BiocParallel dynamicTreeCut edgeR Matrix scater shiny statmod zoo]; };
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|
scsR = derive2 { name="scsR"; version="1.10.0"; sha256="143qn75g3kijbdx2f7yg0wxa8kakyv6w119fwnfqxgpswdgdz2hn"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; };
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|
segmentSeq = derive2 { name="segmentSeq"; version="2.8.0"; sha256="1azbyabm0nsjq45z3p6xhbxs01b5prwnq384y5yp5f6akkr3i4h7"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
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|
seq2pathway = derive2 { name="seq2pathway"; version="1.6.0"; sha256="0rr5fzbcyc32ciyx42kahn8f9fvk7sy6055i37ql8zk5msgrsdsw"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; };
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|
seqCNA = derive2 { name="seqCNA"; version="1.20.0"; sha256="0951qnwgh29w7ws7mjcsrrkavipjpryf0mf0z7bgnpzdlpvkf361"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; };
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|
seqLogo = derive2 { name="seqLogo"; version="1.40.0"; sha256="18bajdl75h3039559d81rgllqqvnq8ygsfxfx081xphxs0v6xggy"; depends=[]; };
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seqPattern = derive2 { name="seqPattern"; version="1.6.0"; sha256="0lsa5pz36xapi3yiv78k3z286a5md5sm5g21pgfyg8zmhmkxr7y8"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
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seqTools = derive2 { name="seqTools"; version="1.8.0"; sha256="18ld6syl85hsdzapgbh9dp2f5prprc64yr2yi5mwrlrsjpqzix00"; depends=[zlibbioc]; };
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seqbias = derive2 { name="seqbias"; version="1.22.0"; sha256="094scvmbcfamblqnc0k9daxym890lff1968xg2lfwfhc92sdnwyd"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; };
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seqplots = derive2 { name="seqplots"; version="1.12.0"; sha256="09l0sks7hzsjv8bha7ric1jhpn65ql4957lh7qg1hfd4pifyamvp"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; };
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|
sevenbridges = derive2 { name="sevenbridges"; version="1.4.9"; sha256="1cy53v8a4bsyhf84201p5fwbyjbmr2j0c3075rj0baqxydbp4fqv"; depends=[curl docopt dplyr httr jsonlite liftr miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; };
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|
shinyMethyl = derive2 { name="shinyMethyl"; version="1.10.0"; sha256="0i6gjg3kjafx7pf9jkmnka33zma2ifg7kl4m71ii4a3zafy384r7"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
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|
shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.12.0"; sha256="1nay7lw325v0gfgnalypyw8dl8i5nc5dwfm3x7gk3cpz2k9f1n0f"; depends=[mixtools rTANDEM shiny xtable]; };
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sigPathway = derive2 { name="sigPathway"; version="1.42.0"; sha256="0bk2gnsli8gnw70qmsic1244h0fpy10xv8i5nns70m9hh600rssc"; depends=[]; };
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sigaR = derive2 { name="sigaR"; version="1.22.0"; sha256="1akjzr8h429ag2sys8kka3adrfx1b2145ag7anxyl125h2dfqh97"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; };
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siggenes = derive2 { name="siggenes"; version="1.48.0"; sha256="1djhghhh4rgjwrfprj376zy77pw1h52j4g5v3jz58xy47a346ila"; depends=[Biobase multtest]; };
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sights = derive2 { name="sights"; version="1.0.0"; sha256="0j5gcpmv6g1b29a93sgmlrzvypfflk035rhbz578cl5ps9iqgbxy"; depends=[ggplot2 lattice MASS qvalue reshape2]; };
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|
signeR = derive2 { name="signeR"; version="1.0.1"; sha256="05mqk99c8clv1vak4f1w6q928g49lfmlmlq4v46yfrqjkrq1acll"; depends=[BiocGenerics Biostrings BSgenome class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; };
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|
sigsquared = derive2 { name="sigsquared"; version="1.6.0"; sha256="12dqrf4ffcaigrrk9rl7d66m7fk1fiinmqrjffl80viyknjvz710"; depends=[Biobase survival]; };
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|
similaRpeak = derive2 { name="similaRpeak"; version="1.6.0"; sha256="11apli0ak9givkw2r9185ckkn7zp7sjq01fvhpv3szlpli5kczkm"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; };
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|
simpleaffy = derive2 { name="simpleaffy"; version="2.50.0"; sha256="1gv6843dy1dzli1cvg5pl39kk8kg0cbcj4qcz4kc20n6zq6dx88q"; depends=[affy Biobase BiocGenerics gcrma genefilter]; };
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|
simulatorZ = derive2 { name="simulatorZ"; version="1.8.0"; sha256="0kw54dw4sfyxns3b78n116rxxl7yfqlaslbvmiksbqj1a2gnsifk"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; };
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sincell = derive2 { name="sincell"; version="1.6.0"; sha256="0hpzrigp6hppamffv0l9fn3xn187dyfbwx91az7hav04lc4slymv"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; };
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|
sizepower = derive2 { name="sizepower"; version="1.44.0"; sha256="0f8gaj0l47pcamml9wbzfrrv51cpclj91cqig6pyigjwqcxahi29"; depends=[]; };
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skewr = derive2 { name="skewr"; version="1.6.0"; sha256="1xk7vf8m90bshk3179ndis672rnvvl15p00dsfh9y4kvxz2skr4q"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; };
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snapCGH = derive2 { name="snapCGH"; version="1.44.0"; sha256="02dkhid7cz9lxffpnrh5d88iyvv6g23yrr14w3vpa189l6n8qvff"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
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snm = derive2 { name="snm"; version="1.22.0"; sha256="01rwb8z9wbf4zw5kh7mnxj9add4r1a3fldvb5n0rir0wyr6snqg5"; depends=[corpcor lme4]; };
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|
snpStats = derive2 { name="snpStats"; version="1.24.0"; sha256="1hkgjd12cz6rfm7w51dgc7cxvrsrqgc2byfinbp0d42rnc3600n2"; depends=[BiocGenerics Matrix survival zlibbioc]; };
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soGGi = derive2 { name="soGGi"; version="1.6.1"; sha256="03bdclygsbvahgx6klmmp3bzcq70kjicrwxjbc6gmpi9gqsyf6nd"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
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specL = derive2 { name="specL"; version="1.8.0"; sha256="07yp81v8ypbysfj881j97cl0qwsxy0yryyzr07by382iys9hdy4c"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
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|
spikeLI = derive2 { name="spikeLI"; version="2.34.0"; sha256="1qaqf4f8vpnrdriz6pplbzjl2vjfhwqgrm528p3m9w48d3s1ccyy"; depends=[]; };
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|
spkTools = derive2 { name="spkTools"; version="1.30.0"; sha256="0fwz77q5xqddhxilbcrv5aq5bhw4i15b0m4bw3dsmw26m0xlwsrq"; depends=[Biobase gtools RColorBrewer]; };
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|
spliceR = derive2 { name="spliceR"; version="1.16.0"; sha256="1h4bbn20cfq5ml0rdy0gn5z4bqf82v6nd3y2zylni29f2gp1j3za"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; };
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spliceSites = derive2 { name="spliceSites"; version="1.22.1"; sha256="1fc4h0ssd0kapgmjfksf0k6zpn5z6gkfvmacgap1nqm8s4y3912z"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; };
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splicegear = derive2 { name="splicegear"; version="1.46.0"; sha256="0c8h9z525qv32d60q24x9crm1aqm511fr2c9ihwq5q7wx3wzi7bq"; depends=[annotate Biobase XML]; };
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splineTimeR = derive2 { name="splineTimeR"; version="1.2.0"; sha256="0wv0k4x6c3m2km0qkgsmb2rr1pj3mdzacqafvg3y8f8996nn4k7s"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; };
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|
splots = derive2 { name="splots"; version="1.40.0"; sha256="1qby74smkq6v8lmknsinfmp4qphmndfbs9b8828h68x02j2cmp06"; depends=[RColorBrewer]; };
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spotSegmentation = derive2 { name="spotSegmentation"; version="1.48.0"; sha256="1ia6nmhllvw19hfp7zw41n43wclmzgirbcm274l1d85nqxq0a277"; depends=[mclust]; };
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sscore = derive2 { name="sscore"; version="1.46.0"; sha256="0s6pd5m18m90fgsaqcjwq6py886z257xz6b3xyg5zr3hqy0nzy9j"; depends=[affy affyio]; };
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|
sscu = derive2 { name="sscu"; version="2.2.0"; sha256="1rhijb4wyahvjfpsz5kkmw1rxc8qj9w1f5imkzb5p59n4cj094b0"; depends=[BiocGenerics Biostrings seqinr]; };
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ssize = derive2 { name="ssize"; version="1.48.0"; sha256="1nj2nhxf85qbpx43j2ymb25wnhd6anw3a2dgxhi3bjpx6qlngnhs"; depends=[gdata xtable]; };
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ssviz = derive2 { name="ssviz"; version="1.8.0"; sha256="1lpf941whhmksw8y8ingaqp17687f3xkgs5rimq65px8bfpa7apq"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; };
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staRank = derive2 { name="staRank"; version="1.16.0"; sha256="1rx4khhj24rdkx2zf5zlgx5avkpgx3qpg0ly815gbdrv7j7imx0f"; depends=[cellHTS2]; };
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statTarget = derive2 { name="statTarget"; version="1.4.12"; sha256="0i4dq5563fkcryax1n5mhdir9w6bq72xxx2c5alb4si892c14ygr"; depends=[gWidgets2 gWidgets2RGtk2 impute pdist pls plyr pROC randomForest rrcov]; };
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stepNorm = derive2 { name="stepNorm"; version="1.46.0"; sha256="0ns0abii8h6dxd44n9hdh7ww11mwb9izcpawxg2vwdqj5wv342qg"; depends=[marray MASS]; };
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stepwiseCM = derive2 { name="stepwiseCM"; version="1.20.0"; sha256="0fyf4n76r8p53byapfb0fjp7dyxsy3gh2d7f4sl81hsa69zz703g"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; };
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subSeq = derive2 { name="subSeq"; version="1.4.0"; sha256="0ly7qcghf9979qmxjvd3ihs7wqys1r45x459jp3sl3skf3cnlz9m"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; };
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|
supraHex = derive2 { name="supraHex"; version="1.12.0"; sha256="05jaqr98rwy02wzppbb2q77yw7yjkz7h6wd74mhd3v8dk4h7963g"; depends=[ape hexbin MASS]; };
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|
survcomp = derive2 { name="survcomp"; version="1.24.0"; sha256="03232xxda6w9cxj7q84bdqjiza7y36kxk6l9n1nqawmy2kayc3kn"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
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sva = derive2 { name="sva"; version="3.22.0"; sha256="1wc1fjm6dzlsqqagm43y57w8jh8nsh0r0m8z1p6ximcb5gxqh7hn"; depends=[genefilter mgcv]; };
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switchBox = derive2 { name="switchBox"; version="1.10.0"; sha256="1avzqy2iqfzb0f6d03bhjr6fr835mwy3isga96fgxnyyca8cf81r"; depends=[gplots pROC]; };
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|
switchde = derive2 { name="switchde"; version="1.0.0"; sha256="0335xxl5g3xi6g9qhhhgm6qhaqpv2dqs1579c9agz05hm5fm3r1c"; depends=[Biobase dplyr ggplot2]; };
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|
synapter = derive2 { name="synapter"; version="1.16.0"; sha256="0bqldlj2fq55nlsbx0d59i8rcsja9sapx34jgm8vfrch8qng9srv"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; };
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|
synergyfinder = derive2 { name="synergyfinder"; version="1.0.0"; sha256="09vznrqz6f9db9wxralg3sb8jx8wra1d1lw5z8ywm8xfsc6jjs4s"; depends=[drc ggplot2 gplots gridBase kriging lattice nleqslv reshape2]; };
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synlet = derive2 { name="synlet"; version="1.4.0"; sha256="18sik8k7j72sd2ix6k1qvcx44njf6rbbrj8bp6y60nzbc4z7psfk"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
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systemPipeR = derive2 { name="systemPipeR"; version="1.8.1"; sha256="0hyi841w8fm2yzpm6lwqi3jz5kc8ny8dy5p29dxynzaw5bpjw56d"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
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tRanslatome = derive2 { name="tRanslatome"; version="1.12.0"; sha256="0jypkql5fklqsr79hzj2fvkzkam1gxrjhkhfqjpws53bvy1f6d55"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; };
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|
ternarynet = derive2 { name="ternarynet"; version="1.18.0"; sha256="14dj124wp0q5cdhmy7ywdvrzs2dpv2gwhwqmzbqazljmmjc49mzk"; depends=[igraph]; };
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tigre = derive2 { name="tigre"; version="1.28.1"; sha256="0imsxpk0v9vwai48hmd3ndaki5z9v3yim0a3kmx3y1aym71wx68c"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
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|
tilingArray = derive2 { name="tilingArray"; version="1.52.0"; sha256="1h1bgkc2smlxrivsqv5k92ynlcwf7gzpjlzsgaimcjvrzd6rvxcp"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; };
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timecourse = derive2 { name="timecourse"; version="1.46.0"; sha256="0m8jlair0bzv0rw52ydv5r1bjnkdq3vxaavhbrpaqynx31lc9hqk"; depends=[Biobase limma marray MASS]; };
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tkWidgets = derive2 { name="tkWidgets"; version="1.52.0"; sha256="1iazw1dc0xr0vdm9vlxy0awlxmdjsvc1l0g9zrqr9h1mldpi1p5x"; depends=[DynDoc widgetTools]; };
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tofsims = derive2 { name="tofsims"; version="1.2.0"; sha256="0msmpix09ypq9gn4gh0z15caap1736zqzzda3zp8pnbjvj45jvv6"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; };
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topGO = derive2 { name="topGO"; version="2.26.0"; sha256="0j6sgvam4lk9348ag6pypcbkv93x4fk0di8ivhr23mz2s2yqzwrx"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; };
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trackViewer = derive2 { name="trackViewer"; version="1.10.2"; sha256="0a54xl7g8p6nzw6zyxchb4qinbzpfl6d7g12080lnjvkcf8dm2pj"; depends=[AnnotationDbi GenomicAlignments GenomicFeatures GenomicRanges grImport Gviz IRanges pbapply Rsamtools rtracklayer S4Vectors scales]; };
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tracktables = derive2 { name="tracktables"; version="1.8.1"; sha256="0px4lhnz6nswih0fwqhqa37wl8j4pc33jyl2yrvi8dhfky3n4pn4"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
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transcriptR = derive2 { name="transcriptR"; version="1.2.0"; sha256="0ny0qnwrzd9xyhjdkb6cigdsk4k0db3qivkma553zifrwrd41ja9"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; };
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traseR = derive2 { name="traseR"; version="1.4.0"; sha256="03c33z1832rxq2h7hi69ya07708264v57h4f5xn29c0xmgd9zz7j"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; };
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triform = derive2 { name="triform"; version="1.16.0"; sha256="18s80s90bfjz5nnm3xh0x1h2px5cq3la1x4vir1g3bgbqgmmfrrm"; depends=[BiocGenerics IRanges yaml]; };
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trigger = derive2 { name="trigger"; version="1.20.0"; sha256="1yg6vcsqccfdd6im5xfa7m5zcm2l1iyd46bj4zfc4fjwbgqw833p"; depends=[corpcor qtl qvalue sva]; };
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trio = derive2 { name="trio"; version="3.12.0"; sha256="1wdjapmj8wxgjg6c201jx14c1gakgr79x8xdszw8kwpnb5ih9byn"; depends=[]; };
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triplex = derive2 { name="triplex"; version="1.14.0"; sha256="0bxxs37iia281k4y94bs0n356xpfw9wvxzzwj8pyqp2gdw876yhj"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; };
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tspair = derive2 { name="tspair"; version="1.32.0"; sha256="1vicp69g5ykvqxpp00rgmnvgg87ra40wyvlnb9gj3xy3g9ixqj8g"; depends=[Biobase]; };
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tweeDEseq = derive2 { name="tweeDEseq"; version="1.20.0"; sha256="0n6g74088ikbnfzzmiq60r3l51rch51krc05zzjg2vw1gx5zschn"; depends=[cqn edgeR limma MASS]; };
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twilight = derive2 { name="twilight"; version="1.50.0"; sha256="0d84xcvpr7y1c6mr4z9dnp2bck52dzw7xbf99dwmj20vxq9d424r"; depends=[Biobase]; };
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tximport = derive2 { name="tximport"; version="1.2.0"; sha256="1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0"; depends=[]; };
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uSORT = derive2 { name="uSORT"; version="1.0.0"; sha256="14bb5sfl0fwmg1g214dqk4i3daqxay0jkcw7a3wlh6a61dcrcfbl"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; };
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unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.10.0"; sha256="108rrifxbk9g06ssfa4jx73j6r0r5d1xaagk071c6zi4a09pa3hh"; depends=[BiocGenerics HTqPCR]; };
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variancePartition = derive2 { name="variancePartition"; version="1.4.2"; sha256="0iidrw8pcrd6c7z5sdff163108q493im8csikl1ahiyz1dxwfhw8"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 MASS pbkrtest reshape2]; };
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vbmp = derive2 { name="vbmp"; version="1.42.0"; sha256="0dqk8lgnib6if2j4j03zl59yc1g97457ib97ayycws9l56amf135"; depends=[]; };
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viper = derive2 { name="viper"; version="1.8.0"; sha256="1wnaqfm6lds9qb6dqqrv8k8asbvgfimnkg4q7czv9bk30b9820i5"; depends=[Biobase e1071 KernSmooth mixtools]; };
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vsn = derive2 { name="vsn"; version="3.42.3"; sha256="0mgl0azys2g90simf8wx6jdwd7gyg3m4pf12n6w6507jixm2cg97"; depends=[affy Biobase ggplot2 lattice limma]; };
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vtpnet = derive2 { name="vtpnet"; version="0.14.0"; sha256="0w52411h0w3bidgcqxanw8f4j2053iff2dfc3qzaiaxj6gfcbf4p"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
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wateRmelon = derive2 { name="wateRmelon"; version="1.18.0"; sha256="1jl8h5xdppnvb8zfj103858dh6lr9w20r64y769wg1kpd3zxvxfw"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; };
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wavClusteR = derive2 { name="wavClusteR"; version="2.8.0"; sha256="013931vz9xz12vz27i15lr63sgmc95krqkx9kz0nsmfs458c6qfz"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; };
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waveTiling = derive2 { name="waveTiling"; version="1.16.0"; sha256="0234jqsc1q2na8x0cnfc8lm52hyqakmp0bc377d6cfgzcdp7racg"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; };
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weaver = derive2 { name="weaver"; version="1.40.0"; sha256="0zvhiasy3s428xy0n0fk0601dbs7fgwpqmp90fbq26aj4gfxy5vg"; depends=[codetools digest]; };
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webbioc = derive2 { name="webbioc"; version="1.46.0"; sha256="0alxpikfnfhsfjkkj8cz27x661r8gwvwvxnzndvzbw5smnyklac5"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; };
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widgetTools = derive2 { name="widgetTools"; version="1.52.0"; sha256="1jj18mkaq8fc5zdaf1l1vvs9barx9b5wp0qa8rvx3j6zacdlbw2r"; depends=[]; };
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xcms = derive2 { name="xcms"; version="1.50.1"; sha256="0gr59vn52cmpsqlbqlr55a6rfwq0sk2gqnba1fhyfjd22cbghxm8"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet multtest mzR plyr ProtGenerics RANN RColorBrewer S4Vectors]; };
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xmapbridge = derive2 { name="xmapbridge"; version="1.32.0"; sha256="02fm6sy5ynq450pkcf1zlwj2ih6f48pishmhia2d5is5iy22acbh"; depends=[]; };
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xps = derive2 { name="xps"; version="1.34.0"; sha256="1hrprdnqyy7rrvrzsnm9sy75q31zgxy134v4zbivya8f30dap4x8"; depends=[]; };
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yamss = derive2 { name="yamss"; version="1.0.4"; sha256="0dirg1nl2bp1xr0m10yzckhwynxl6p6jmvb5s5b03g66m4a7i72p"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; };
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yaqcaffy = derive2 { name="yaqcaffy"; version="1.34.0"; sha256="0wv52qnds4ni2a1p7m54ihdwiqxzdyvq0fb5dzjcq41abnkpiqsi"; depends=[simpleaffy]; };
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yarn = derive2 { name="yarn"; version="1.0.1"; sha256="1ra8b711inispl3in1ajjwkyxax6w9w5nb9w47iacyk7kp6vi3a3"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; };
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zlibbioc = derive2 { name="zlibbioc"; version="1.20.0"; sha256="0hbk90q5hl0fycfvy5nxxa4hxgglag9lzp7i0fg849bqygg5nbyq"; depends=[]; };
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}
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