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angsd
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ants
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ants: 2.5.0 -> 2.5.1
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2024-01-26 01:12:12 +01:00 |
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aragorn
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astral
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bamtools
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bayescan
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bcftools
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bcftools: 1.18 -> 1.19
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2023-12-13 06:48:21 +00:00 |
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bedops
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bedtools
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bftools
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bioawk
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blast
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bowtie
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bowtie2
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bowtie2: 2.5.2 -> 2.5.3
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2024-01-18 01:41:31 +00:00 |
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bppsuite
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bwa
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bwa-mem2
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cd-hit
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clustal-omega
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cmtk
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conglomerate
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dcm2niix
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dcm2niix: 1.0.20211006 -> 1.0.20230411
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2024-02-07 16:11:03 +10:00 |
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deeptools
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deeptools: 3.5.4 -> 3.5.5
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2024-03-09 10:06:54 +00:00 |
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delly
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delly: 1.1.8 -> 1.2.6
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2023-12-22 18:36:25 +00:00 |
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diamond
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diamond: 2.1.8 -> 2.1.9
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2024-02-01 04:22:08 +00:00 |
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dssp
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dssp: 4.4.4.1 -> 4.4.5
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2023-11-24 22:34:06 +09:00 |
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ecopcr
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eggnog-mapper
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eggnog-mapper: 2.1.10 -> 2.1.12
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2024-01-18 19:17:47 +00:00 |
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emboss
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est-sfs
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exonerate
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EZminc
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fastp
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febio-studio
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flywheel-cli
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treewide: s_targetPlatform_hostPlatform_ in non-compiler packages
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2023-11-17 08:07:34 +00:00 |
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freebayes
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gatk
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gatk: 4.4.0.0 -> 4.5.0.0
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2023-12-15 04:20:42 +00:00 |
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genmap
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hh-suite
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hh-suite: fix build on GCC 13
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2024-02-08 21:54:47 +00:00 |
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hisat2
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hmmer
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igv
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igv: 2.17.2 -> 2.17.3
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2024-03-12 02:48:25 +00:00 |
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inormalize
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inormalize: fix build on darwin
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2024-01-21 23:26:55 +01:00 |
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iqtree
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itsx
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iv
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jbrowse
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kalign
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kalign: 3.3.5 -> 3.4.0
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2023-12-11 06:26:11 +00:00 |
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kallisto
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kent
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perlPackages.BioBigFile: Addressing reviewer change
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2023-11-21 23:16:39 +01:00 |
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kssd
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last
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last: 1541 -> 1542
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2024-02-19 07:08:37 +00:00 |
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macs2
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macse
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mafft
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mafft: 7.520 -> 7.525
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2024-03-13 12:21:27 +00:00 |
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manta
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megahit
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megahit: fir gcc-13 build failure
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2024-02-10 10:26:43 +00:00 |
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meme-suite
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messer-slim
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messer-slim: 4.0.1 -> 4.1
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2023-12-16 20:13:33 +00:00 |
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migrate
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minc-tools
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minc-widgets
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minia
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minimap2
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minimap2: 2.26 -> 2.27
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2024-03-13 00:30:24 +00:00 |
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mmseqs2
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mni_autoreg
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mrbayes
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mrtrix
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muscle
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N3
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n3: fix build on darwin
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2024-01-21 23:22:54 +01:00 |
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nest
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neuron
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niftyreg
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niftyseg
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obitools
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treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages}
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2024-01-30 19:56:57 +01:00 |
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octopus
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octopus-caller: fix gcc-13 build failure (drop -Werror)
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2024-02-20 09:39:27 +00:00 |
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paml
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picard-tools
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picard-tools: 3.1.0 -> 3.1.1
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2023-11-15 14:35:32 +00:00 |
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platypus
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plink-ng
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poretools
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poretools: mark as broken
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2023-12-11 04:28:39 +00:00 |
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prodigal
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quast
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raxml
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repseek
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sambamba
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samblaster
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samtools
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samtools: 1.19 -> 1.19.2
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2024-01-28 12:24:10 -08:00 |
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seaview
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seqkit
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seqkit: 2.7.0 -> 2.8.0
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2024-03-12 00:29:44 +00:00 |
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seqtk
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snpeff
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somatic-sniper
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sortmerna
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sortmerna: fix gcc-13 build
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2024-02-25 07:49:10 +00:00 |
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spades
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SPAdes: fix build
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2024-01-20 15:28:48 -03:00 |
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sratoolkit
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stacks
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stacks: 2.65 -> 2.66
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2024-01-24 07:54:36 +00:00 |
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star
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strelka
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strelka: add aarch64-linux support
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2023-12-11 13:37:17 +01:00 |
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subread
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sumatools
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svaba
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svaba: fix gcc-13 build failure
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2024-02-11 09:59:19 +00:00 |
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tandem-aligner
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tebreak
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treemix
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trf
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trimal
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trimmomatic
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trimmomatic: make deterministic and clean up
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2024-01-04 21:45:11 +01:00 |
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truvari
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varscan
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vcftools
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veryfasttree
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whisper
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whisper: enable parallel building
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2024-01-25 19:27:12 +00:00 |
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xenomapper
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