Bruno Bzeznik 9243a44c9c seqkit: init at 2.3.1		2022-11-04 08:51:32 +01:00
..
angsd	angsd: 0.938 -> 0.940	2022-10-14 14:50:26 +00:00
ants	ants: 2.4.1 -> 2.4.2	2022-10-19 09:19:31 +08:00
aragorn
astral
bayescan
bcftools
bedops
bedtools
bftools
blast
bowtie
bowtie2
bppsuite
bwa
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix
deeptools
delly	pkgs.applications: remove unused args	2022-10-12 16:00:16 +02:00
diamond
dssp
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc
fastp
febio-studio
flywheel-cli
freebayes
gatk	gatk: 4.2.6.1 -> 4.3.0.0	2022-10-16 21:48:30 +08:00
genmap
hisat2
hmmer
igv
inormalize
iqtree
itsx
iv
kallisto
kent
kssd
last
MACS2
macse
mafft
manta
megahit	treewide: optional -> optionals where the argument is a list	2022-10-10 15:40:21 +03:00
meme-suite	pkgs.applications: remove unused args	2022-10-12 16:00:16 +02:00
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2
mmseqs2	mmseqs2: init at 14-7e284	2022-10-31 23:49:10 +09:00
mni_autoreg
mosdepth
mrbayes
mrtrix
muscle
N3
neuron	treewide: optional -> optionals where the argument is a list	2022-10-10 15:40:21 +03:00
niftyreg
niftyseg
obitools
octopus
paml
picard-tools
platypus
plink-ng
poretools
prodigal
quast
raxml
repseek
sambamba	sambamba: fix compilation on Darwin, cleanup installPhase	2022-10-23 16:12:47 +02:00
samblaster
samtools	treewide: optional -> optionals where the argument is a list	2022-10-10 15:40:21 +03:00
seaview
seqkit	seqkit: init at 2.3.1	2022-11-04 08:51:32 +01:00
seqtk	seqtk: init at 1.3	2022-09-25 19:55:58 -04:00
snpeff
somatic-sniper
sortmerna	pkgs.applications: remove unused args	2022-10-12 16:00:16 +02:00
spades
stacks
star
strelka
subread
sumatools
svaba
tebreak
treemix
trimal
truvari
varscan
vcftools	treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs	2022-09-26 17:53:26 +03:00
whisper
xenomapper