53 lines
1.3 KiB
Nix
53 lines
1.3 KiB
Nix
{ gevent
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, buildPythonPackage
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, fetchFromGitHub
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, hostname
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, pytest
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, python
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, stdenv
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}:
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buildPythonPackage rec {
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pname = "ruffus";
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version = "2.8.1";
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src = fetchFromGitHub {
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owner = "cgat-developers";
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repo = pname;
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rev = "v${version}";
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sha256 = "1gyabqafq4s2sy0prh3k1m8859shzjmfxr7fimx10liflvki96a9";
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};
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propagatedBuildInputs = [ gevent ];
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postPatch = ''
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sed -i -e 's|/bin/bash|${stdenv.shell}|' ruffus/test/Makefile
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sed -i -e 's|\tpytest|\t${pytest}/bin/pytest|' ruffus/test/Makefile
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sed -i -e 's|\tpython|\t${python.interpreter}|' ruffus/test/Makefile
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sed -i -e 's|/usr/bin/env bash|${stdenv.shell}|' ruffus/test/run_all_unit_tests.cmd
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sed -i -e 's|python3|${python.interpreter}|' ruffus/test/run_all_unit_tests3.cmd
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sed -i -e 's|python %s|${python.interpreter} %s|' ruffus/test/test_drmaa_wrapper_run_job_locally.py
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'';
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makefile = "ruffus/test/Makefile";
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checkInputs = [
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gevent
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hostname
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pytest
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];
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checkPhase = ''
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export HOME=$TMPDIR
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cd ruffus/test
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make all PYTEST_OPTIONS="-q --disable-warnings"
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'';
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meta = with stdenv.lib; {
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description = "Light-weight Python Computational Pipeline Management";
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homepage = http://www.ruffus.org.uk;
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license = licenses.mit;
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maintainers = [ maintainers.kiwi ];
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};
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}
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