42 lines
1.3 KiB
Nix
42 lines
1.3 KiB
Nix
{ stdenv, fetchurl, python }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
name = "cmdstan-2.9.0";
|
|
|
|
src = fetchurl {
|
|
url = "https://github.com/stan-dev/cmdstan/releases/download/v2.9.0/cmdstan-2.9.0.tar.gz";
|
|
sha256 = "08bim6nxgam989152hm0ga1rfb33mr71pwsym1nmfmavma68bwm9";
|
|
};
|
|
|
|
buildFlags = "build";
|
|
enableParallelBuilding = true;
|
|
nativeBuildInputs = stdenv.lib.optional doCheck python;
|
|
|
|
doCheck = true;
|
|
checkPhase = "python ./runCmdStanTests.py src/test/interface"; # see #5368
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/opt $out/bin
|
|
cp -r . $out/opt/cmdstan
|
|
ln -s $out/opt/cmdstan/bin/stanc $out/bin/stanc
|
|
ln -s $out/opt/cmdstan/bin/stansummary $out/bin/stansummary
|
|
cat > $out/bin/stan <<EOF
|
|
#!/bin/sh
|
|
make -C $out/opt/cmdstan "\$(realpath "\$1")"
|
|
EOF
|
|
chmod a+x $out/bin/stan
|
|
'';
|
|
|
|
meta = {
|
|
description = "Command-line interface to Stan";
|
|
longDescription = ''
|
|
Stan is a probabilistic programming language implementing full Bayesian
|
|
statistical inference with MCMC sampling (NUTS, HMC), approximate Bayesian
|
|
inference with Variational inference (ADVI) and penalized maximum
|
|
likelihood estimation with Optimization (L-BFGS).
|
|
'';
|
|
homepage = http://mc-stan.org/interfaces/cmdstan.html;
|
|
license = stdenv.lib.licenses.bsd3;
|
|
platforms = stdenv.lib.platforms.linux;
|
|
};
|
|
}
|