4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
38 lines
1.1 KiB
Nix
38 lines
1.1 KiB
Nix
{ lib, stdenv, fetchurl, zlib }:
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stdenv.mkDerivation rec {
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pname = "bwa";
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version = "0.7.17";
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src = fetchurl {
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url = "mirror://sourceforge/bio-bwa/${pname}-${version}.tar.bz2";
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sha256 = "1zfhv2zg9v1icdlq4p9ssc8k01mca5d1bd87w71py2swfi74s6yy";
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};
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buildInputs = [ zlib ];
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# Avoid hardcoding gcc to allow environments with a different
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# C compiler to build
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preConfigure = ''
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sed -i '/^CC/d' Makefile
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'';
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# it's unclear which headers are intended to be part of the public interface
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# so we may find ourselves having to add more here over time
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installPhase = ''
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install -vD -t $out/bin bwa
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install -vD -t $out/lib libbwa.a
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install -vD -t $out/include bntseq.h
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install -vD -t $out/include bwa.h
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install -vD -t $out/include bwamem.h
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install -vD -t $out/include bwt.h
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'';
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meta = with lib; {
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description = "A software package for mapping low-divergent sequences against a large reference genome, such as the human genome";
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license = licenses.gpl3;
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homepage = "http://bio-bwa.sourceforge.net/";
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maintainers = with maintainers; [ luispedro ];
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platforms = platforms.x86_64;
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};
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}
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