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Matthew Bauer 1c8aba8334 treewide: use blas and lapack 
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.

treewide: cleanup from blas/lapack changes

A few issues in the original treewide:

- can’t assume blas64 is a bool
- unused commented code
2020-04-17 16:24:09 -05:00
..
ants treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
aragorn treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bayescan bayescan: init at 2.1 (#68191) 2020-01-09 12:38:53 -05:00
bcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bedtools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
blast treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bowtie2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bwa treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
cd-hit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
clustal-omega treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
cmtk treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
conglomerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
dcm2niix treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
deeptools deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
delly delly: 0.8.1 -> 0.8.2 2020-02-11 19:21:59 +11:00
diamond treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
ecopcr treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
eggnog-mapper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
emboss treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
est-sfs treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
exonerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
EZminc EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
freebayes treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
hisat2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
hmmer treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
igv treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
inormalize
itsx treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
iv treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
kallisto kallisto: 0.46.1 -> 0.46.2 2020-02-15 22:39:58 +01:00
kssd kssd: init at 1.0 2019-12-08 16:48:59 +01:00
last last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
macse macse: init at 2.03 2019-09-24 08:24:07 +02:00
manta manta: init 1.6.0 2020-01-24 02:02:19 -08:00
megahit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
messer-slim treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
migrate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-widgets
minia minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
minimap2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mni_autoreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mosdepth treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mrbayes treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mrtrix mrtrix: init at 3.0_RC3_latest 2020-02-16 22:25:25 -05:00
muscle treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
N3
ncbi-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
neuron treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyseg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
octopus treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
paml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
picard-tools picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
platypus treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink-ng treewide: use blas and lapack 2020-04-17 16:24:09 -05:00
poretools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
prodigal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
raxml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
samtools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
seaview seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
snpeff treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
somatic-sniper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sortmerna treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
spades Revert "Revert "Merge master into staging-next"" 2020-02-05 19:41:25 +01:00
stacks stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
star star: 2.7.2b -> 2.7.3a 2019-11-03 10:23:05 +01:00
strelka treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sumatools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
svaba svaba: init at 1.1.0 2019-12-08 14:51:05 +01:00
tebreak tebreak: init at 1.0 2019-12-29 17:16:10 +11:00
trimal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
truvari truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
varscan treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
vcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00