5377640490
Commit b83ed3efe81525302469a3052982f41393a616e0 in the nco source repo, hard-coded the paths to cp and mv, so as to point to their FHS locations, which resulted in ncrename throwing a "file not found" error when invoked outside of an FHS sandbox. This nixpkgs commit patches the src/nco_fl_utl.c to instead point the associated nixpkgs.coreutils locations. The hard-coded paths actually occur in a number of other locations, but this is enough to quash the error w/ ncrename (and presumably the other CLI nco tooling, although this isn't tested).
30 lines
1 KiB
Nix
30 lines
1 KiB
Nix
{ stdenv, fetchzip, netcdf, netcdfcxx4, gsl, udunits, antlr, which, curl, flex, coreutils }:
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stdenv.mkDerivation rec {
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version = "4.9.2";
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pname = "nco";
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nativeBuildInputs = [ flex which ];
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buildInputs = [ netcdf netcdfcxx4 gsl udunits antlr curl coreutils ];
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src = fetchzip {
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url = "https://github.com/nco/nco/archive/${version}.tar.gz";
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sha256 = "0nip9dmdx3d5nc30bz1d2w9his1dph136l53r160aa3bmb29xwqn";
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};
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prePatch = ''
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substituteInPlace src/nco/nco_fl_utl.c \
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--replace "/bin/cp" "${coreutils}/bin/cp"
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substituteInPlace src/nco/nco_fl_utl.c \
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--replace "/bin/mv" "${coreutils}/bin/mv"
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'';
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meta = {
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description = "NetCDF Operator toolkit";
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longDescription = "The NCO (netCDF Operator) toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5";
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homepage = "http://nco.sourceforge.net/";
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license = stdenv.lib.licenses.gpl3;
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maintainers = [ stdenv.lib.maintainers.bzizou ];
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platforms = stdenv.lib.platforms.linux;
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};
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}
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