github-actions[bot] 9be52f693f Merge master into staging-next		2023-02-10 12:01:38 +00:00
..
angsd
ants	ants: unpin vtk dependency	2023-01-27 00:21:26 -05:00
aragorn
astral
bayescan
bcftools
bedops
bedtools
bftools
blast
bowtie
bowtie2	bowtie2: 2.4.5 -> 2.5.1	2023-01-21 21:19:00 +00:00
bppsuite
bwa	treewide: replace http by https when https is a permanent redirection	2023-01-22 02:46:49 +01:00
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix	treewide: Rename libyamlcpp* to yaml-cpp*	2023-01-31 16:22:54 +01:00
deeptools	treewide: switch to nativeCheckInputs	2023-01-21 12:00:00 +00:00
delly
diamond	diamond: 2.1.0 -> 2.1.1	2023-02-10 02:56:54 +00:00
dssp
ecopcr
eggnog-mapper
emboss	treewide: replace http by https when https is a permanent redirection	2023-01-22 02:46:49 +01:00
est-sfs
exonerate
EZminc
fastp
febio-studio
flywheel-cli
freebayes
gatk
genmap	treewide: switch to nativeCheckInputs	2023-01-21 12:00:00 +00:00
hisat2
hmmer
igv	igv: 2.15.5 -> 2.16.0	2023-02-04 18:01:58 +00:00
inormalize
iqtree
itsx
iv
kallisto
kent
kssd
last	last: 1422 -> 1445	2023-01-26 16:10:25 +01:00
MACS2
macse
mafft
manta
megahit
meme-suite
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2
mmseqs2
mni_autoreg
mosdepth
mrbayes
mrtrix	treewide: switch to nativeCheckInputs	2023-01-21 12:00:00 +00:00
muscle
N3
neuron
niftyreg
niftyseg
obitools
octopus	treewide: add gcc12 flags	2023-01-27 21:20:52 -06:00
paml
picard-tools
platypus
plink-ng
poretools
prodigal
quast
raxml
repseek
sambamba	sambamba: 0.8.2 -> 1.0.0	2023-01-22 13:54:41 +00:00
samblaster
samtools	Merge pull request #212002 from mothsART/feature/replace_http_by_https	2023-01-22 03:26:02 +01:00
seaview
seqkit
seqtk
snpeff	treewide: replace http by https when https is a permanent redirection	2023-01-22 02:46:49 +01:00
somatic-sniper
sortmerna
spades
sratoolkit
stacks	stacks: 2.60 -> 2.62	2023-02-06 21:36:49 +01:00
star	star: 2.7.10a -> 2.7.10b	2023-01-14 06:06:52 +00:00
strelka
subread	treewide: replace http by https when https is a permanent redirection	2023-01-22 02:46:49 +01:00
sumatools
svaba
tandem-aligner
tebreak
treemix
trimal
truvari	python310Packages.levenshtein: don't use alias	2023-01-09 06:09:31 -08:00
varscan	varscan: 2.4.4 -> 2.4.5	2023-02-05 13:38:28 +00:00
vcftools
veryfasttree
whisper
xenomapper