30 lines
830 B
Nix
30 lines
830 B
Nix
{ lib, stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
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stdenv.mkDerivation rec {
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pname = "kallisto";
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version = "0.48.0";
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src = fetchFromGitHub {
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repo = "kallisto";
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owner = "pachterlab";
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rev = "v${version}";
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sha256 = "sha256-r0cdR0jTRa1wu/LDKW6NdxI3XaKj6wcIVbIlct0fFvI=";
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};
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nativeBuildInputs = [ autoconf cmake ];
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buildInputs = [ hdf5 zlib ];
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cmakeFlags = [ "-DUSE_HDF5=ON" ];
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# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
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enableParallelBuilding = false;
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meta = with lib; {
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description = "Program for quantifying abundances of transcripts from RNA-Seq data";
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homepage = "https://pachterlab.github.io/kallisto";
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license = licenses.bsd2;
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platforms = platforms.linux;
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maintainers = with maintainers; [ arcadio ];
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};
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}
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