42 lines
1.2 KiB
Nix
42 lines
1.2 KiB
Nix
{
|
|
stdenv
|
|
, python
|
|
}:
|
|
|
|
python.buildPythonPackage rec {
|
|
pname = "snakemake";
|
|
version = "5.2.2";
|
|
|
|
propagatedBuildInputs = with python; [
|
|
appdirs
|
|
ConfigArgParse
|
|
datrie
|
|
docutils
|
|
jsonschema
|
|
pyyaml
|
|
ratelimiter
|
|
requests
|
|
wrapt
|
|
];
|
|
|
|
src = python.fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "adffe7e24b4a613a9e8bf0a2a320b3cea236d86afb9132bb0bbbc08b8e35a3a3";
|
|
};
|
|
|
|
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
|
|
|
|
meta = with stdenv.lib; {
|
|
homepage = http://snakemake.bitbucket.io;
|
|
license = licenses.mit;
|
|
description = "Python-based execution environment for make-like workflows";
|
|
longDescription = ''
|
|
Snakemake is a workflow management system that aims to reduce the complexity of
|
|
creating workflows by providing a fast and comfortable execution environment,
|
|
together with a clean and readable specification language in Python style. Snakemake
|
|
workflows are essentially Python scripts extended by declarative code to define
|
|
rules. Rules describe how to create output files from input files.
|
|
'';
|
|
maintainers = with maintainers; [ helkafen renatoGarcia ];
|
|
};
|
|
}
|