f8fe297ff1
symlink shared libraries from LD_LIBRARY_PATH into lib/julia, as using a wrapper with LD_LIBRARY_PATH causes segmentation faults when program returns an error: $ julia -e 'throw(Error())' only applied for 0.6, which is the current julia version. Will see if we can remove the older versions in master. (cherry picked from commit 41f3a4e0030a1b0233de6ca7f5208c44eb370313)
194 lines
5.8 KiB
Nix
194 lines
5.8 KiB
Nix
{ stdenv, fetchgit, fetchurl, fetchzip
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# build tools
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, gfortran, m4, makeWrapper, patchelf, perl, which, python2
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, runCommand
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, paxctl
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# libjulia dependencies
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, libunwind, readline, utf8proc, zlib
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, llvm, libffi, ncurses
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# standard library dependencies
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, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
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# linear algebra
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, openblas, arpack, suitesparse
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# Darwin frameworks
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, CoreServices, ApplicationServices
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}:
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with stdenv.lib;
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# All dependencies must use the same OpenBLAS.
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let
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arpack_ = arpack;
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suitesparse_ = suitesparse;
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in
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let
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arpack = arpack_.override { inherit openblas; };
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suitesparse = suitesparse_.override { inherit openblas; };
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in
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let
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dsfmtVersion = "2.2.3";
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dsfmt = fetchurl {
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url = "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-${dsfmtVersion}.tar.gz";
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sha256 = "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42";
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};
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libuvVersion = "d8ab1c6a33e77bf155facb54215dd8798e13825d";
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libuv = fetchurl {
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url = "https://api.github.com/repos/JuliaLang/libuv/tarball/${libuvVersion}";
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sha256 = "0q5ahc9dzca2yc6cjbhpfi9nwc4yhhjbgxgsychksn13d24gv7ba";
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};
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rmathVersion = "0.1";
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rmath-julia = fetchurl {
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url = "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v${rmathVersion}";
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sha256 = "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p";
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};
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virtualenvVersion = "15.0.0";
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virtualenv = fetchurl {
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url = "mirror://pypi/v/virtualenv/virtualenv-${virtualenvVersion}.tar.gz";
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sha256 = "06fw4liazpx5vf3am45q2pdiwrv0id7ckv7n6zmpml29x6vkzmkh";
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};
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in
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stdenv.mkDerivation rec {
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pname = "julia";
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version = "0.6.2";
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name = "${pname}-${version}";
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src = fetchzip {
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url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz";
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sha256 = "0ym4n9vn6w8vj175mmsc2nzvdk2ij0cdrs44lkr3p0signji73b5";
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};
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prePatch = ''
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mkdir deps/srccache
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cp "${dsfmt}" "./deps/srccache/dsfmt-${dsfmtVersion}.tar.gz"
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cp "${rmath-julia}" "./deps/srccache/Rmath-julia-${rmathVersion}.tar.gz"
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cp "${libuv}" "./deps/srccache/libuv-${libuvVersion}.tar.gz"
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cp "${virtualenv}" "./deps/srccache/virtualenv-${virtualenvVersion}.tar.gz"
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'';
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patches = [
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./0001.1-use-system-utf8proc.patch
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./0002-use-system-suitesparse.patch
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] ++ stdenv.lib.optional stdenv.needsPax ./0004-hardened.patch;
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postPatch = ''
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patchShebangs . contrib
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for i in backtrace replutil cmdlineargs compile; do
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mv test/$i.jl{,.off}
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touch test/$i.jl
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done
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sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i test/libgit2.jl
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sed -e 's/Failed to resolve /failed to resolve /g' -i test/libgit2.jl
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'';
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buildInputs = [
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arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
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pcre2.dev openblas openlibm openspecfun readline suitesparse utf8proc
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zlib llvm
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]
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++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
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;
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nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ]
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++ stdenv.lib.optional stdenv.needsPax paxctl;
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makeFlags =
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let
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arch = head (splitString "-" stdenv.system);
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march = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
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or (throw "unsupported architecture: ${arch}");
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# Julia requires Pentium 4 (SSE2) or better
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cpuTarget = { "x86_64" = "x86-64"; "i686" = "pentium4"; }."${arch}"
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or (throw "unsupported architecture: ${arch}");
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in [
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"ARCH=${arch}"
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"MARCH=${march}"
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"JULIA_CPU_TARGET=${cpuTarget}"
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"PREFIX=$(out)"
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"prefix=$(out)"
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"SHELL=${stdenv.shell}"
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"USE_SYSTEM_BLAS=1"
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"USE_BLAS64=${if openblas.blas64 then "1" else "0"}"
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"LIBBLAS=-lopenblas"
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"LIBBLASNAME=libopenblas"
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"USE_SYSTEM_LAPACK=1"
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"LIBLAPACK=-lopenblas"
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"LIBLAPACKNAME=libopenblas"
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"USE_SYSTEM_SUITESPARSE=1"
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"SUITESPARSE_LIB=-lsuitesparse"
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"SUITESPARSE_INC=-I${suitesparse}/include"
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"USE_SYSTEM_ARPACK=1"
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"USE_SYSTEM_FFTW=1"
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"USE_SYSTEM_GMP=1"
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"USE_SYSTEM_LIBGIT2=1"
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"USE_SYSTEM_LIBUNWIND=1"
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"USE_SYSTEM_LLVM=1"
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"LLVM_VER=3.9.1"
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"USE_SYSTEM_MPFR=1"
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"USE_SYSTEM_OPENLIBM=1"
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"USE_SYSTEM_OPENSPECFUN=1"
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"USE_SYSTEM_PATCHELF=1"
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"USE_SYSTEM_PCRE=1"
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"PCRE_CONFIG=${pcre2.dev}/bin/pcre2-config"
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"PCRE_INCL_PATH=${pcre2.dev}/include/pcre2.h"
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"USE_SYSTEM_READLINE=1"
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"USE_SYSTEM_UTF8PROC=1"
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"USE_SYSTEM_ZLIB=1"
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];
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NIX_CFLAGS_COMPILE = [ "-fPIC" ];
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LD_LIBRARY_PATH = makeLibraryPath [
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arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
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openspecfun pcre2 suitesparse llvm
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];
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dontStrip = true;
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dontPatchELF = true;
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enableParallelBuilding = true;
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doCheck = !stdenv.isDarwin;
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checkTarget = "testall";
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# Julia's tests require read/write access to $HOME
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preCheck = ''
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export HOME="$NIX_BUILD_TOP"
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'';
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preBuild = ''
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sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
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sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
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export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
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'';
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postInstall = ''
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# Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
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# as using a wrapper with LD_LIBRARY_PATH causes segmentation
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# faults when program returns an error:
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# $ julia -e 'throw(Error())'
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find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
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if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
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ln -sv $lib $out/lib/julia/$(basename $lib)
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fi
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done
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'';
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meta = {
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description = "High-level performance-oriented dynamical language for technical computing";
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homepage = https://julialang.org/;
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license = stdenv.lib.licenses.mit;
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maintainers = with stdenv.lib.maintainers; [ raskin ];
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platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
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broken = stdenv.isi686;
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};
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}
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