47 lines
1.2 KiB
Nix
47 lines
1.2 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchFromGitHub
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, pythonOlder
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, pytestCheckHook
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, gdcm
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, nibabel
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, numpy
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, pydicom
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, scipy
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, setuptools
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}:
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buildPythonPackage rec {
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pname = "dicom2nifti";
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version = "2.4.8";
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disabled = pythonOlder "3.6";
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# no tests in PyPI dist
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src = fetchFromGitHub {
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owner = "icometrix";
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repo = pname;
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rev = version;
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hash = "sha256-2Pspxdeu3pHwXpbjS6bQQnvdeMuITRwYarPuLlmNcv8";
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};
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propagatedBuildInputs = [ gdcm nibabel numpy pydicom scipy setuptools ];
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# python-gdcm just builds the python interface provided by the "gdcm" package, so
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# we should be able to replace "python-gdcm" with "gdcm" but this doesn't work
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# (similar to https://github.com/NixOS/nixpkgs/issues/84774)
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postPatch = ''
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substituteInPlace setup.py --replace "python-gdcm" ""
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substituteInPlace tests/test_generic.py --replace "from common" "from dicom2nifti.common"
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'';
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nativeCheckInputs = [ pytestCheckHook ];
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pythonImportsCheck = [ "dicom2nifti" ];
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meta = with lib; {
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homepage = "https://github.com/icometrix/dicom2nifti";
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description = "Library for converting dicom files to nifti";
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license = licenses.mit;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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