28 lines
888 B
Nix
28 lines
888 B
Nix
{ stdenv, buildPythonPackage, fetchFromGitHub, cython, numpy, pysam, matplotlib, python, isPy27, isPy3k }:
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buildPythonPackage rec {
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version = "0.12.4";
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pname = "HTSeq";
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src = fetchFromGitHub {
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owner = "htseq";
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repo = "htseq";
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rev = "release_${version}";
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sha256 = "0y7vh249sljqjnv81060w4xkdx6f1y5zdqkh38yk926x6v9riijm";
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};
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nativeBuildInputs = [ cython ];
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propagatedBuildInputs = [ numpy pysam matplotlib ];
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checkPhase = stdenv.lib.optionalString isPy27 ''
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${python.interpreter} python2/test/test_general.py
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'' + stdenv.lib.optionalString isPy3k ''
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${python.interpreter} python3/test/test_general.py
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'';
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meta = with stdenv.lib; {
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homepage = "https://htseq.readthedocs.io/";
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description = "A framework to work with high-throughput sequencing data";
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maintainers = with maintainers; [ unode ];
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platforms = platforms.unix;
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};
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}
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