f97fb96ea0
by disabling stack-protector essentially the same fix as we used for openmpi in https://github.com/NixOS/nixpkgs/pull/128606
77 lines
1.7 KiB
Nix
77 lines
1.7 KiB
Nix
{ lib
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, stdenv
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, fetchPypi
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, python
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, buildPythonPackage
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, gfortran
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, nose
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, pytest
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, pytest-xdist
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, numpy
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, pybind11
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}:
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buildPythonPackage rec {
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pname = "scipy";
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version = "1.6.3";
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src = fetchPypi {
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inherit pname version;
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sha256 = "a75b014d3294fce26852a9d04ea27b5671d86736beb34acdfc05859246260707";
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};
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checkInputs = [ nose pytest pytest-xdist ];
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nativeBuildInputs = [ gfortran ];
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buildInputs = [ numpy.blas pybind11 ];
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propagatedBuildInputs = [ numpy ];
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# Remove tests because of broken wrapper
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prePatch = ''
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rm scipy/linalg/tests/test_lapack.py
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'';
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doCheck = true;
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preConfigure = ''
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sed -i '0,/from numpy.distutils.core/s//import setuptools;from numpy.distutils.core/' setup.py
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export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES
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'';
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preBuild = ''
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ln -s ${numpy.cfg} site.cfg
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'';
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# disable stackprotector on aarch64-darwin for now
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#
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# build error:
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#
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# /private/tmp/nix-build-python3.9-scipy-1.6.3.drv-0/ccDEsw5U.s:109:15: error: index must be an integer in range [-256, 255].
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#
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# ldr x0, [x0, ___stack_chk_guard];momd
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#
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hardeningDisable = lib.optionals (stdenv.isAarch64 && stdenv.isDarwin) [ "stackprotector" ];
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checkPhase = ''
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runHook preCheck
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pushd dist
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${python.interpreter} -c "import scipy; scipy.test('fast', verbose=10, parallel=$NIX_BUILD_CORES)"
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popd
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runHook postCheck
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'';
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passthru = {
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blas = numpy.blas;
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};
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setupPyBuildFlags = [ "--fcompiler='gnu95'" ];
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SCIPY_USE_G77_ABI_WRAPPER = 1;
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meta = with lib; {
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description = "SciPy (pronounced 'Sigh Pie') is open-source software for mathematics, science, and engineering";
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homepage = "https://www.scipy.org/";
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license = licenses.bsd3;
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maintainers = [ maintainers.fridh ];
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};
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}
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