94a5ae4f91
Without the change build fails on upstream gcc-10 as:
ld: lib_minctracc.a(minctracclib.c.o):(.bss+0x78): multiple definition of
`prog_name'; CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o:(.bss+0x18): first defined here
45 lines
1.5 KiB
Nix
45 lines
1.5 KiB
Nix
{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, makeWrapper, perlPackages, libminc }:
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stdenv.mkDerivation rec {
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pname = "mni_autoreg";
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version = "unstable-2017-09-22";
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src = fetchFromGitHub {
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owner = "BIC-MNI";
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repo = pname;
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rev = "ab99e29987dc029737785baebf24896ec37a2d76";
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sha256 = "0axl069nv57vmb2wvqq7s9v3bfxwspzmk37bxm4973ai1irgppjq";
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};
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patches = [
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# Pull upstream workaround for -fno-common toolchains:
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# https://github.com/BIC-MNI/mni_autoreg/pull/28
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(fetchpatch {
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name = "fno-common.patch";
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url = "https://github.com/BIC-MNI/mni_autoreg/commit/06adfacbd84369ea3bcc4376596ac1c0f2e49af9.patch";
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sha256 = "004sdrbx9kcj1qqwjly6p03svakl0x2sbv83salyg63fv67jynx8";
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})
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];
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nativeBuildInputs = [ cmake makeWrapper ];
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buildInputs = [ libminc ];
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propagatedBuildInputs = with perlPackages; [ perl GetoptTabular MNI-Perllib ];
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cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" ];
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# testing broken: './minc_wrapper: Permission denied' from Testing/ellipse0.mnc
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postFixup = ''
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for prog in autocrop mritoself mritotal xfmtool; do
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echo $out/bin/$prog
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wrapProgram $out/bin/$prog --prefix PERL5LIB : $PERL5LIB;
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done
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'';
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meta = with lib; {
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homepage = "https://github.com/BIC-MNI/mni_autoreg";
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description = "Tools for automated registration using the MINC image format";
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maintainers = with maintainers; [ bcdarwin ];
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platforms = platforms.unix;
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license = licenses.free;
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};
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}
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