nixpkgs-suyu/pkgs/applications/science/biology/star/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

39 lines
855 B
Nix

{ lib, stdenv, fetchFromGitHub, zlib }:
stdenv.mkDerivation rec {
pname = "star";
version = "2.7.6a";
src = fetchFromGitHub {
repo = "STAR";
owner = "alexdobin";
rev = version;
sha256 = "1zw9f4jbhz0y51namnmid42pa7pviviy94q9db8w0774nksdf8is";
};
sourceRoot = "source/source";
postPatch = ''
substituteInPlace Makefile --replace "/bin/rm" "rm"
'';
buildInputs = [ zlib ];
buildFlags = [ "STAR" "STARlong" ];
enableParallelBuilding = true;
installPhase = ''
runHook preInstall
install -D STAR STARlong -t $out/bin
runHook postInstall
'';
meta = with lib; {
description = "Spliced Transcripts Alignment to a Reference";
homepage = "https://github.com/alexdobin/STAR";
license = licenses.gpl3Plus;
platforms = platforms.linux;
maintainers = [ maintainers.arcadio ];
};
}