122 lines
4.5 KiB
Nix
122 lines
4.5 KiB
Nix
{ stdenv
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, fetchFromGitHub
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, fetchpatch
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}:
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stdenv.mkDerivation rec {
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version = "8.4";
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name = "sage-src-${version}";
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src = fetchFromGitHub {
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owner = "sagemath";
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repo = "sage";
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rev = version;
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sha256 = "0gips1hagiz9m7s21bg5as8hrrm2x5k47h1bsq0pc46iplfwmv2d";
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};
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nixPatches = [
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# https://trac.sagemath.org/ticket/25358
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(fetchpatch {
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name = "safe-directory-test-without-patch.patch";
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url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463";
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sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7";
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})
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# Unfortunately inclusion in upstream sage was rejected. Instead the bug was
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# fixed in python, but of course not backported to 2.7. So we'll probably
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# have to keep this around until 2.7 is deprecated.
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# https://trac.sagemath.org/ticket/25316
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# https://github.com/python/cpython/pull/7476
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./patches/python-5755-hotpatch.patch
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# Revert the commit that made the sphinx build fork even in the single thread
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# case. For some yet unknown reason, that breaks the docbuild on nix and archlinux.
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# See https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ.
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./patches/revert-sphinx-always-fork.patch
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# Make sure py2/py3 tests are only run when their expected context (all "sage"
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# tests) are also run. That is necessary to test dochtml individually. See
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# https://trac.sagemath.org/ticket/26110 for an upstream discussion.
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./patches/Only-test-py2-py3-optional-tests-when-all-of-sage-is.patch
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];
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packageUpgradePatches = let
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# fetch a diff between base and rev on sage's git server
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# used to fetch trac tickets by setting the base to the release and the
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# revision to the last commit that should be included
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fetchSageDiff = { base, rev, ...}@args: (
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fetchpatch ({
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url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}";
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# We don't care about sage's own build system (which builds all its dependencies).
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# Exclude build system changes to avoid conflicts.
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excludes = [ "build/*" ];
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} // builtins.removeAttrs args [ "rev" "base" ])
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);
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in [
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# New glpk version has new warnings, filter those out until upstream sage has found a solution
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# https://trac.sagemath.org/ticket/24824
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./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply
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(fetchpatch {
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url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch";
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sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp";
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stripLen = 1;
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})
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# https://trac.sagemath.org/ticket/25260
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./patches/numpy-1.15.1.patch
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# ntl upgrade
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(fetchpatch {
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name = "lcalc-c++11.patch";
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url = "https://git.archlinux.org/svntogit/community.git/plain/trunk/sagemath-lcalc-c++11.patch?h=packages/sagemath&id=0e31ae526ab7c6b5c0bfacb3f8b1c4fd490035aa";
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sha256 = "0p5wnvbx65i7cp0bjyaqgp4rly8xgnk12pqwaq3dqby0j2bk6ijb";
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})
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# https://trac.sagemath.org/ticket/26360
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(fetchpatch {
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name = "arb-2.15.1.patch";
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url = "https://git.sagemath.org/sage.git/patch/?id=30cc778d46579bd0c7537ed33e8d7a4f40fd5c31";
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sha256 = "13vc2q799dh745sm59xjjabllfj0sfjzcacf8k59kwj04x755d30";
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})
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# https://trac.sagemath.org/ticket/26326
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# needs to be split because there is a merge commit in between
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(fetchSageDiff {
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name = "networkx-2.2-1.patch";
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base = "8.4";
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rev = "68f5ad068184745b38ba6716bf967c8c956c52c5";
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sha256 = "112b5ywdqgyzgvql2jj5ss8la9i8rgnrzs8vigsfzg4shrcgh9p6";
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})
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(fetchSageDiff {
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name = "networkx-2.2-2.patch";
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base = "626485bbe5f33bf143d6dfba4de9c242f757f59b~1";
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rev = "db10d327ade93711da735a599a67580524e6f7b4";
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sha256 = "09v87id25fa5r9snfn4mv79syhc77jxfawj5aizmdpwdmpgxjk1f";
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})
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];
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patches = nixPatches ++ packageUpgradePatches ++ [
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./patches/known-padics-bug.patch
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];
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postPatch = ''
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# make sure shebangs etc are fixed, but sage-python23 still works
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find . -type f -exec sed \
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-e 's/sage-python23/python/g' \
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-i {} \;
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echo '#!${stdenv.shell}
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python "$@"' > build/bin/sage-python23
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# Do not use sage-env-config (generated by ./configure).
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# Instead variables are set manually.
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echo '# do nothing' > src/bin/sage-env-config
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'';
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configurePhase = "# do nothing";
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buildPhase = "# do nothing";
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installPhase = ''
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cp -r . "$out"
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'';
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}
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