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193 commits

Author SHA1 Message Date
Jean-Philippe Bernardy
d51bd36646 cudnn: add 6.0 2017-09-07 09:28:03 +02:00
jamtrott
c8c0cd4d6c petsc: init at 3.7.6 (#28368) 
* petsc: init at 3.7.6

* petsc: use configureFlagsArray

* petsc: Remove unneeded binaries
 2017-09-03 17:11:16 +01:00
James D. Trotter
518fb60797 fenics: init at 2017.1.0 2017-08-15 16:19:45 +02:00
Frederik Rietdijk
b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0 
samtools: 1.4.0 -> 1.5.0
 2017-08-13 22:32:48 +02:00
mimadrid
302e7825fa
htslib: 1.4.0 -> 1.5.0 2017-08-13 00:16:42 +02:00
mimadrid
09e0cc7cc7
Update homepage attributes: http -> https 
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
 2017-08-03 11:56:15 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
Frederik Rietdijk
ec59e3b3f5 openblas: 0.2.19 -> 0.2.20 2017-07-28 18:08:06 +02:00
Nikolay Amiantov
5fdc1e763f ipopt: 3.12.6 -> 2.12.8 2017-07-27 17:07:44 +03:00
Ben Darwin
d1d0824b2f elastix: change platforms to "linux" from "unix" 2017-07-19 17:41:14 -04:00
Ben Darwin
b21805d972 elastix: init at 4.8 2017-05-23 18:25:15 -04:00
Tyson Whitehead
8fdbc828b9
clblas-cuda: requires ocl-icd now for libOpenCL.so.1 #25902 2017-05-18 18:32:09 -04:00
Jörg Thalheim
be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4 
Update/htslib 1.4
 2017-05-11 07:08:56 +01:00
mimadrid
295a23a2db
htslib: 1.3.2 -> 1.4 2017-05-07 23:15:42 +02:00
Daiderd Jordan
f240276000
blas: fix darwin library id 2017-04-27 23:25:07 +02:00
Vladimír Čunát
6617c8bd87
A fixed version of commit eb750f9a7b 
For detailed explanation see:
https://github.com/NixOS/nixpkgs/commit/24444513fb5#commitcomment-21767916
 2017-04-14 18:59:36 +02:00
Joachim Fasting
540a6412e3
suitesparse_4_4: NIX_CFLAGS -> NIX_CFLAGS_COMPILE 
Tested with nix-build -A suitesparse_4_4
 2017-04-12 19:27:03 +02:00
Joachim Fasting
a883581ddb
suitesparse_4_2: remove bogus NIX_CFLAGS 
NIX_CFLAGS should be NIX_CFLAGS_COMPILE; since pic is the default, we
simply remove the bogus declaration.

Tested with nix-build -A suitesparse_4_2
 2017-04-12 19:26:58 +02:00
Frederik Rietdijk
767e459200 Merge pull request #22726 from matthewbauer/openblas-closure-size 
openblas: disable static libs
 2017-04-10 16:11:19 +02:00
Matthew Daiter
d712c04d25 suitesparse: refining CUDA support 2017-04-04 17:23:20 +02:00
Matthew Daiter
6f721ce534 suitesparse: add CUDA support 2017-03-29 15:47:51 +02:00
Matthew Bauer
bd8654f45d openblas: disable static libs 
Disable static on openblas. This should save about 57M from closure sizes.
 2017-02-12 18:45:44 -06:00
Matthew Daiter
82835f7eb3 cudnn51_cudatoolkit80: hash change 2017-02-08 18:40:32 +01:00
Anthony Cowley
084a76ef6f atlas: change platforms to unix 
The build succeeds on darwin and linux.
 2017-01-10 21:02:04 -05:00
Robert Helgesson
2990cd8aea
clblas-cuda: use system gtest library 
Without this the build attempts to download the library.
 2016-12-28 12:21:07 +01:00
mimadrid
25c984f940
htslib: 1.3.1 -> 1.3.2 2016-12-23 19:31:44 -05:00
Thomas Tuegel
bed668c051
openblas: refactor and set TARGET always 2016-12-10 16:49:45 -06:00
Nikolay Amiantov
be95ceaff2 treewide: quote URLs in my packages 2016-11-24 01:17:52 +03:00
Matthew Daiter
3897b344f3 cudnn51_cudatoolkit80: Init at 5.1-8.0 2016-11-21 14:51:39 +01:00
Falco Peijnenburg
5f5f0614b0 Support for ARM in openblas 
Attempting to build openblas on ARM resulted in the error "unsopported system: armv7l_linux". This PR resolves that issue and some other issues that pop up when trying to build openblas for ARM.
 2016-11-18 12:44:49 +01:00
Matthew Daiter
541b3fc7d2 cudnn5_cudatoolkit80: adding to main repo 2016-11-07 12:07:29 +01:00
Daiderd Jordan
3187b01720 Merge pull request #19816 from veprbl/octave_fixes 
octave: darwin fix
 2016-11-05 10:49:33 +01:00
Frederik Rietdijk
7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Dmitry Kalinkin
a8eb57d953
openblas: silence warnings on darwin 
Without this one gets a lot of build time warnings like:

ld: warning: object file (/tmp/strip.2OzFn8) was built for newer OSX
version (10.9) than being linked (10.7)
 2016-10-23 21:19:14 -04:00
Thomas Tuegel
a58ec829e4
openblas: disable some hardening flags 2016-10-22 12:57:40 -05:00
Frederik Rietdijk
9b66b5c2cc liblapack: use python2 2016-10-18 23:16:05 +02:00
Thomas Tuegel
d94abcb157
openblas: 0.2.17 -> 0.2.19 2016-09-09 19:42:54 -05:00
Michael Raskin
6b075ee8b1 openlibm: 0.4.1 -> 0.5.4 2016-09-06 19:31:38 +02:00
obadz
0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen
a18ee4acb7 treewide: Make explicit that 'dev' output of boost is used 
Also fix one incorrect output in geant.
 2016-08-23 04:32:21 +03:00
Tuomas Tynkkynen
d3705faa56 treewide: Use makeLibraryPath in LD_LIBRARY_PATHs 2016-08-23 00:14:00 +03:00
Robin Gloster
33e1c78ae3 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-16 07:54:01 +00:00
Nikolay Amiantov
0464600859 ipopt: 3.12.4 -> 3.12.6 2016-08-14 22:37:08 +03:00
Robin Gloster
1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen
21f17d69f6 treewide: Add lots of meta.platforms 
Build-tested on x86_64 Linux & Mac.
 2016-08-02 21:42:43 +03:00
Robin Gloster
1f04b4a566 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-21 00:56:43 +00:00
Josef Kemetmueller
f3dc4d9ec3 superlu: init at 5.2.1 2016-07-19 12:37:08 +00:00
Franz Pletz
f597e97236 atlas: Fix hardening 2016-07-13 19:30:52 +02:00
Franz Pletz
26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Joachim Fasting
46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1 
bcftools: init at 1.3.1
 2016-06-24 22:15:51 +02:00