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212 commits

Author SHA1 Message Date
Aaron Andersen
063c82fd2f
Merge pull request #68773 from mimame/update/cytoscape-3.7.2 
cytoscape: 3.7.1 -> 3.7.2
 2019-09-15 09:43:11 -04:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
Miguel Madrid Mencía
40b760e07c
cytoscape: 3.7.1 -> 3.7.2 2019-09-14 10:52:46 +02:00
volth
7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Frederik Rietdijk
98ef78326d Merge staging-next into staging 2019-08-31 18:07:33 +02:00
Frederik Rietdijk
96e5474329 Merge master into staging-next 2019-08-31 18:04:31 +02:00
Alexander
35ac3344e7 colmap: init at 3.5 (#67759) 
* colmap: init at 3.5
 2019-08-31 08:06:46 -04:00
volth
7bb6b373ab treewide: name -> pname (#67513) 2019-08-31 07:41:22 -04:00
volth
08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next 
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
 2019-08-24 08:55:37 +02:00
R. RyanTM
187ec1a8c6 tulip: 5.1.0 -> 5.2.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tulip/versions
 2019-08-20 19:45:43 -07:00
volth
c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
Lancelot SIX
2e955ca4c5
motu_client: drop 
This fork of cls-motu is unmaintained. Remove it from nixpkgs.
 2019-08-05 14:32:25 +02:00
Orivej Desh
b5d1d50aa9 google-gflags: move to aliases.nix 
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012

gflags.name will be updated in staging.
 2019-07-25 09:18:32 +00:00
Frederik Rietdijk
79a03641d5 Merge staging-next into staging 2019-07-09 15:46:26 +02:00
Millian Poquet
0513ae77ff simgrid: 3.22.2 -> 3.23 2019-07-08 14:00:14 +02:00
Daiderd Jordan
da7bcec42f
root: remove cf-private 2019-07-03 22:20:22 +02:00
Alyssa Ross
062210bdff treewide: update cargoSha256 hashes for cargo-vendor upgrade 
A recent upgrade of cargo-vendor changed its output slightly, which
broke all cargoSha256 hashes in nixpkgs.
See https://github.com/NixOS/nixpkgs/issues/60668 for more information.

Since then, a few hashes have been fixed in master by hand, but there
were a lot still to do, so I did all of the ones left over with some
scripts I wrote.

The one hash I wasn’t able to update was habitat's, because it’s
currently broken and the build doesn’t get far enough to produce a
hash anyway.
 2019-06-01 15:17:52 +00:00
Millian Poquet
13aa449bab simgrid: remove unneeded 'name' definition 2019-05-15 12:35:12 +02:00
Millian Poquet
00fc5bd08f simgrid: override checkPhase -> preCheck 
This commit changes how failing tests are ignored.
- Previously, the whole checkPhase was overridden.
- Now, preCheck generates a ctest ignore file.

ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest
 2019-05-14 18:27:51 +02:00
Millian Poquet
aa29b79e8a simgrid: fetchgit -> fetchFromGitLab 2019-05-13 21:26:09 +02:00
Millian Poquet
c7ab2b9499 simgrid: 3.21 -> 3.22.2 
- GitHub -> Framagit (SimGrid main repo has moved)
- Test binaries must now be explicitly compiled (`make tests`)
- Fix broken documentation link
 2019-05-13 18:58:27 +02:00
Daniel Schaefer
bac4d95aa2 treewide: Change URLs to HTTPS 
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
 2019-04-22 10:19:54 +02:00
Matthew Bauer
f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes 
treewide: update homepages to https where available
 2019-04-15 20:47:30 -04:00
Matthew Bauer
290a5d916e treewide: update homepages to https where available 
Based on "problems" from repology:

https://repology.org/repository/nix_unstable/problems

Mostly simple changes to reflect redirects.
 2019-04-15 10:10:05 -04:00
Michael Raskin
796050fedd openmvs: mark as broken 2019-04-14 17:45:21 +02:00
Dmitry Kalinkin
c321b64b3f
snakemake: 5.2.2 -> 5.4.4 2019-04-10 14:18:26 -04:00
Dmitry Kalinkin
c36f841ec7
root5: fix build 2019-03-20 00:26:13 -04:00
Peter Hoeg
136126ceae
Merge pull request #56498 from ariutta/patch-1 
cytoscape: bump 3.6.1 -> 3.7.1
 2019-03-11 11:20:50 +08:00
Jan Tojnar
d3ff902e94
webkit: move to aliases 2019-03-06 00:20:55 +01:00
Dmitry Kalinkin
aa4f5cc4a3
simgrid: Fix the upstream project URL 
Closes: #56849
 2019-03-04 16:42:46 -05:00
Anders Riutta
c792fd107b
cytoscape: bump 3.6.1 -> 3.7.1 
Needed to update URL, because `wget "http://chianti.ucsd.edu/cytoscape-3.7.1/cytoscape-3.7.1.tar.gz"` returns `404`.
 2019-02-27 16:40:50 -08:00
Sebastien Bourdeauducq
3b03b901fb rink: init at 0.4.4 2019-02-03 13:29:18 +08:00
Vladimír Čunát
bde8efe792
Merge branch 'master' into staging-next 
A couple thousand rebuilds have accumulated on master.
 2019-01-12 12:19:34 +01:00
Dmitry Kalinkin
73625f2522 root5: mark as broken on Linux 2019-01-11 20:45:37 -05:00
Dmitry Kalinkin
0c9335fb1c root, root5: fix build on darwin 2019-01-11 20:45:37 -05:00
Vladimír Čunát
287144e342
Merge branch 'master' into staging-next 2019-01-10 13:07:21 +01:00
Piotr Bogdan
71f216b7e6 golly-beta: link with lib{dl,GL} explicitly 2019-01-04 21:44:19 +00:00
Frederik Rietdijk
0a2caa41fe Python: drop python.majorVersion 
Drop `python.majorVersion`. For Python language version, use `python.pythonVersion`.
For implementation version, use `python.sourceVersion`.

Some expressions were broken. Those that were identified were fixed.

fixup major
 2019-01-04 10:45:22 +01:00
c0bw3b
0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Vladimír Čunát
a5de78b7d7
Merge branch 'master' into staging-next 2018-11-26 10:28:00 +01:00
c0bw3b
0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Frederik Rietdijk
c31cb577ae Merge master into staging-next 2018-11-22 09:57:08 +01:00
worldofpeace
2e70b40f58
Merge pull request #49376 from dpaetzel/package-netlogo 
NetLogo: init 6.0.4
 2018-11-21 21:37:01 -05:00
David Pätzel
fa623ad828 netlogo: init 6.0.4 2018-11-21 09:38:22 +01:00
Frederik Rietdijk
0d0d7dcd06 Merge staging-next into staging 2018-11-18 10:41:34 +01:00
Kevin Liu
c93b16829c
boinc: 7.8.0 -> 7.14.2 2018-11-16 15:52:22 -05:00
Patrick Hilhorst
9ec40cc3bf
treewide: Fix overrides having wrong versions 2018-11-06 00:06:21 +01:00
Tristan Helmich (omniIT)
4f8cac02c6 simgrid: 3.20 -> 3.21 2018-11-02 14:23:39 +01:00