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Author SHA1 Message Date
Ryan Burns
813c400edc cntk: fix build with protobuf 3.18+ 2021-09-23 02:16:17 -07:00
Ryan Burns
e12802213e caffe: fix build with protobuf 3.18+ 2021-09-22 21:57:13 -07:00
markuskowa
b4f1a1338f
Merge pull request #138512 from r-burns/csdp 
[staging-next] Revert "csdp: move gfortran to nativeBuildInputs"
 2021-09-20 12:18:40 +02:00
Alyssa Ross
e2bb7997c4
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	nixos/doc/manual/release-notes/rl-2111.section.md
 2021-09-19 17:08:00 +00:00
Ryan Burns
b23afbb866 Revert "csdp: move gfortran to nativeBuildInputs" 
We are not using gfortran as a native binary; we are using its lib.

Fixes build on darwin.

This reverts commit eabbf45b60.
 2021-09-19 02:35:27 -07:00
Bobby Rong
0fd8cc3908
treewide: switch from pantheon.maintainers to lib.teams.pantheon 2021-09-18 23:07:00 +08:00
github-actions[bot]
d370d9ee99
Merge staging-next into staging 2021-09-11 18:01:51 +00:00
Stephen Morgan
28b5133cce geogebra: 5-0-644-0 -> 5-0-662-0 2021-09-11 23:49:13 +10:00
Markus Kowalewski
35a17a0cfe
scilab: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski
74443bc786
jags: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski
eabbf45b60
csdp: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Michael Raskin
df3f3ccc6d
Merge pull request #136250 from collares/sage-networkx 
sage: adapt tests for networkx 2.6
 2021-08-31 07:52:29 +00:00
Mauricio Collares
7194273c77 sage: adapt tests for networkx 2.6 2021-08-30 22:43:24 -03:00
schotts-fired
9ec4fb0cd1 R: add memory profiling compile option 2021-08-30 18:24:42 +02:00
davidak
d18866b1c2 nasc: 0.7.5 -> 0.8.0 2021-08-23 23:23:52 +02:00
Mauricio Collares
46c3703ec1 sage: 9.3 -> 9.4 2021-08-22 09:53:12 -03:00
Mauricio Collares
9be264795c pynac: import segfault fix 2021-08-22 09:53:12 -03:00
Mauricio Collares
b565d30c47 maxima: 5.44.0 -> 5.45.0 2021-08-22 09:53:08 -03:00
Sandro Jäckel
026fb18487
ginac: switch to pname + version, cleanup 2021-08-21 11:20:15 +02:00
Sandro
a9f66e941d
Merge pull request #134390 from smancill/colpack-darwin 
colpack: refactor builder and build on darwin
 2021-08-20 23:58:11 +02:00
Sebastián Mancilla
50062cc371 colpack: refactor builder and build on darwin 
- Use autoreconfHook and set flags with configureFlags.
- Only enable OpenMP on Linux, so it can be built on Darwin.
- Do not install .la file. Other distros also remove them.
- Do not build examples.
- Install example sources into a proper location.
- Fixed license.
 2021-08-19 15:51:23 -04:00
Sandro
ac9f41a782
Merge pull request #134393 from smancill/bump-lp-solve 
lp_solve: 5.5.2.5 -> 5.5.2.11
 2021-08-19 21:36:59 +02:00
Zhenya Vinogradov
6714723bfa sage: fix icon location in the kernel definition 
The icon location is incorrect, `doc` directory exists inside `src`
directory, but not on the top level.
 2021-08-19 12:20:35 +03:00
Sebastián Mancilla
514c8569aa lp_solve: 5.5.2.5 -> 5.5.2.11 
- Use the generic builder and override build and install phases instead
  of using buildCommand and missing phases and hooks, like fixup.

- Fix build on Darwin by using the proper build script (ccc.osx).

  - Add cctools to build inputs because ccc.osx uses the libtool
    command.

  - The install_name of the library is not set so fix it with
    fixDarwinDylibNames.

- Install headers into the expected location $out/include/lpsolve
  instead of $out/include. This follows what other distro do.
 2021-08-17 23:20:47 -04:00
Artturi
8ba3c63144
Merge pull request #133998 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 21.02.0 -> 21.05.2
 2021-08-17 23:00:21 +03:00
R. RyanTM
cbd7e0dec1 qalculate-gtk: 3.19.0 -> 3.20.1 2021-08-17 16:04:54 +00:00
R. RyanTM
0ba50b681e wxmaxima: 21.02.0 -> 21.05.2 2021-08-14 11:51:36 +00:00
Michael Raskin
1350415b52
Merge pull request #127798 from PhDyellow/r_bump_version 
R: 4.0.4 -> 4.1.0
 2021-08-13 13:41:07 +00:00
Phil Dyer
a21caa7f19 Remove unused fetchpatch from inputs 2021-08-13 10:19:31 +10:00
Phil Dyer
7f07184a8e Add Patch for aarch64 2021-08-13 10:16:59 +10:00
Phil Dyer
d37edcd3d5 R: 4.1.0 -> 4.1.1 2021-08-11 16:41:53 +10:00
R. RyanTM
e36200fc36 ginac: 1.8.0 -> 1.8.1 2021-08-10 07:09:09 +00:00
Sandro
fd26f351b5
Merge pull request #131493 from collares/polymake-4.4 
polymake: 3.2.rc4 -> 4.4
 2021-08-08 12:30:59 +02:00
Felix Buehler
7b20eb9e37 scilab-bin: remove phases 2021-08-03 00:03:12 +02:00
Ben Siraphob
2f94991628 treewide: fix redirected URLs 
Using the script in maintainers/scripts/update-redirected-urls.sh
 2021-08-01 00:01:50 +07:00
Frederik Rietdijk
8f6b07c223 maxima: use strictDeps and python3 2021-07-27 20:37:06 +02:00
Phil Dyer
9a88197fe7 R: 4.0.4 -> 4.1.0 
Co-authored-by: Mauricio Collares <244239+collares@users.noreply.github.com>
 2021-07-27 12:32:00 +10:00
Mauricio Collares
045d6f35d9 polymake: 3.2.rc4 -> 4.4 2021-07-25 20:12:21 -03:00
Jörg Thalheim
d4b8356ce2 pcalc: 20141224 -> 20181202 2021-07-18 08:40:09 +02:00
Felix Buehler
82cb33a0ae treewide: remove meta.version 2021-07-18 00:07:38 +02:00
Mauricio Collares
183071d282 pynac: 0.7.27 -> 0.7.29 2021-07-16 19:30:11 -03:00
FliegendeWurst
5a1b72a6b1 mathematica: 12.3.0 -> 12.3.1 2021-07-15 15:29:33 +02:00
R. RyanTM
d342554ec5 engauge-digitizer: 12.1 -> 12.2.2 2021-07-12 14:06:35 +00:00
markuskowa
13b3e91794
Merge pull request #128856 from cburstedde/package-petsc-p4est 
petsc: refactor using mpi and p4est
 2021-07-12 11:46:44 +02:00
Phillip Seeber
5c4d869ada engauge-digitizer: init at 12.1 
code-review hints


engauge-digitizer: code review suggestions
 2021-07-09 13:27:30 +02:00
Carsten Burstedde
25456656ef
Merge branch 'master' into package-petsc-p4est 2021-07-06 07:19:35 +02:00
Sandro
90fa755d73
Merge pull request #123692 from collares/eclib-20210503 2021-07-06 01:59:32 +02:00
Carsten Burstedde
705afbd338
Merge branch 'master' into package-petsc-p4est 2021-07-05 19:30:59 +02:00
github-actions[bot]
a6fdcf8d52
Merge master into staging-next 2021-07-04 12:01:06 +00:00
Gabriel Ebner
5fd14f54c7 qalculate-gtk: 3.18.0 -> 3.19.0 2021-07-04 10:41:23 +02:00
github-actions[bot]
89ee82a6e9
Merge master into staging-next 2021-07-04 06:01:11 +00:00
Mauricio Collares
30cd543b32 eclib: 20190909 -> 20210625, import sage update patch 2021-07-03 12:55:52 -03:00
Robert Schütz
1ec5651913 treewide: use pythonPackages.python-dateutil instead of pythonPackages.dateutil 2021-07-03 13:45:57 +02:00
github-actions[bot]
dcd8f68f13
Merge master into staging-next 2021-07-02 00:01:33 +00:00
Carsten Burstedde
870b2847a4
getdp: align with latest petsc dependency 2021-07-01 22:57:26 +02:00
Mauricio Collares
17e024867f sage: import sphinx and sympy update patches, update pari 2.13 patch 2021-06-30 20:26:16 -03:00
github-actions[bot]
1f528e6ac6
Merge staging-next into staging 2021-06-24 00:06:31 +00:00
Anderson Torres
65db0350fe
Merge pull request #127905 from AndersonTorres/new-4ti2 
4ti2: init at 1.6.9
 2021-06-23 21:01:05 -03:00
AndersonTorres
68dd7bca1b 4ti2: add myself to maintainers 2021-06-23 20:23:30 -03:00
sternenseemann
ba01fb866a glsurf: use ocamlPackages_4_05 
Update to somewhat newer OCaml, so we can hopefully retire older sets in
the future.
 2021-06-23 14:52:32 +00:00
AndersonTorres
4b0789d7c5 4ti2: init at 1.6.9 2021-06-23 10:35:00 -03:00
Sandro
b2a93084f0
Merge pull request #127355 from cjab/programmer-calculator 2021-06-22 17:12:33 +02:00
Chad Jablonski
11b44aaa11 programmer-calculator: init at 2.1 2021-06-22 10:03:56 -04:00
Sandro
5f3ebbc661
Merge pull request #123242 from xworld21/eukleides-texlive-deps-instead-of-buildinputs 2021-06-21 11:57:06 +02:00
Vincenzo Mantova
b0c6bd9211 eukleides: depend on texinfo4 instead of overriding texinfo 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
b88e8d999c eukleides: allow PostScript transparency 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
8fb57a90eb eukleides: add getopt in euktoeps wrapper 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
190ba6ee72 eukleides: specify texlive dependencies instead of buildInputs 2021-06-20 20:17:22 +01:00
Axel Forsman
d8984f8522
gurobi: 8.1.0 -> 9.1.2 (#120525) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-06-18 10:43:39 +02:00
AndersonTorres
e9e5f5f84d Change all alsaLib references to alsa-lib 2021-06-10 01:12:49 -03:00
FliegendeWurst
09127f1415 mathematica: 12.2.0 -> 12.3.0 2021-06-05 11:32:04 +02:00
Stephen Morgan
f12d58f223 geogebra6: 6-0-631-0 -> 6-0-644-0 2021-06-04 23:49:04 +10:00
Stephen Morgan
b6f4313e4a geogebra: 5-0-620-0 -> 5-0-644-0 2021-06-04 23:48:27 +10:00
Mauricio Collares
2c7d2ce295 sageWithDoc: fix documentation symlinks 2021-05-30 13:51:15 -03:00
Mauricio Collares
22c86a0466 sageWithDoc: fix static asset deduplication 2021-05-20 18:29:02 -07:00
Mauricio Collares
874d1aba74 sageWithDoc: update sagedoc.py test for sphinx 3.5 2021-05-20 18:29:02 -07:00
Mauricio Collares
cd9e8e284c sage: fix deprecation warning from matplotlib upgrade 2021-05-20 18:29:02 -07:00
Pavol Rusnak
f7ed00be13
Merge pull request #123689 from prusnak/bcal 
bcal: cleanup package, enable aarch64-darwin build
 2021-05-19 17:47:35 +02:00
Pavol Rusnak
6996896b48
bcal: cleanup package, enable aarch64-darwin build 2021-05-19 16:36:17 +02:00
Timo Kaufmann
6cf6470429
Merge pull request #122624 from collares/pari-2.13 
pari: 2.11.4 -> 2.13.1, update sage test expectations
 2021-05-19 16:07:15 +02:00
Erik Bäckman
5b143ccc91
numworks-epsilon: 15.3.2 -> 15.5.0 (#122760) 
Co-authored-by: erikbackman <erikbackman@users.noreply.github.com>
 2021-05-17 19:16:51 +02:00
Austin Butler
66201e2c1d cntk: fix build 2021-05-16 20:03:06 -07:00
github-actions[bot]
8c6d819143
Merge master into staging-next 2021-05-16 18:32:41 +00:00
Jan Tojnar
684991c696
Merge branch 'master' into staging-next 
- Thunderbird 68 has been dropped on master.
- gccCrossLibcStdenv has been factored out on staging-next in all-packages.nix, while the file has been re-formatted on master.
 2021-05-16 15:34:51 +02:00
Vincenzo Mantova
4ef47f32d7 eukleides: use $CC instead of hardcoded gcc 2021-05-16 12:03:47 +01:00
Stefan Frijters
06e7dc2f43
eukleides: Update license 
See license section in the README.
 2021-05-15 10:18:06 +02:00
Stefan Frijters
30b5330e85
eukleides: Fix build, expose tex package 2021-05-15 10:18:06 +02:00
Mauricio Collares
9847e84d55 pari: 2.11.4 -> 2.13.1, update sage test expectations 2021-05-12 21:21:14 -03:00
github-actions[bot]
d8fb37f470
Merge master into staging-next 2021-05-12 06:21:33 +00:00
Mauricio Collares
b413d3570a sage: 9.3.rc4 -> 9.3 2021-05-11 16:49:32 -03:00
Mauricio Collares
f206ba8ab9 singular: replace local patches by upstream ones 2021-05-11 16:49:10 -03:00
Mauricio Collares
391028eb3a pynac: add more patches, link to sage trac 2021-05-11 16:49:10 -03:00
Mauricio Collares
2a95fe1aea gap: 4.11.0 -> 4.11.1 2021-05-11 16:49:10 -03:00
Vladimír Čunát
5663b2b2d3
Merge branch 'master' into staging-next 
(a trivial conflict in transmission)
 2021-05-09 09:31:55 +02:00
R. RyanTM
5ab09faafb gretl: 2021a -> 2021b 2021-05-08 17:11:36 -07:00
Martin Weinelt
9651084620 Merge remote-tracking branch 'origin/master' into staging-next 2021-05-08 14:43:43 +02:00
Jan Tojnar
468cb5980b gnome: rename from gnome3 
Since GNOME version is now 40, it no longer makes sense to use the old attribute name.
 2021-05-08 09:47:42 +02:00
github-actions[bot]
dbc1478d23
Merge staging-next into staging 2021-05-05 06:21:29 +00:00
R. RyanTM
59cd52dc40 gmsh: 4.8.3 -> 4.8.4 2021-05-05 01:26:49 -04:00
github-actions[bot]
49721bed32
Merge staging-next into staging 2021-05-01 18:26:21 +00:00
Sandro
4b2c9640e7
Merge pull request #120613 from erikbackman/master 2021-05-01 18:42:40 +02:00
John Ericson
17305d2df0
Merge pull request #111487 from Ericson2314/llvm-outputs-and-cross-compile-tools 
llvmPackages: Clean up outputs
 2021-04-30 11:28:08 -04:00
github-actions[bot]
d7882499f8
Merge staging-next into staging 2021-04-30 12:26:14 +00:00
Michael Raskin
ee4684f052
Merge pull request #117716 from idontgetoutmuch/master 
Fix https://github.com/NixOS/nixpkgs/issues/117715
 2021-04-30 07:28:43 +00:00
Andrew Childs
7869d16545 llvmPackages: Multuple outputs for everythting 
Also begin to start work on cross compilation, though that will have to
be finished later.

The patches are based on the first version of
https://reviews.llvm.org/D99484. It's very annoying to do the
back-porting but the review has uncovered nothing super major so I'm
fine sticking with what I've got.

Beyond making the outputs work, I also strove to re-sync the packages,
as they have been drifting pointlessly apart for some time.

----

Other misc notes, highly incomplete

- lvm-config-native and llvm-config are put in `dev` because they are
  tools just for build time.

- Clang no longer has an lld dep. That was introduced in
  db29857eb3, but if clang needs help
  finding lld when it is used we should just pass it flags / put in the
  resource dir. Providing it at build time increases critical path
  length for no good reason.

----

A note on `nativeCC`:

`stdenv` takes tools from the previous stage, so:

1. `pkgsBuildBuild`: `(?1, x, x)`
2. `pkgsBuildBuild.stdenv.cc`: `(?0, ?1, x)`

while:

1. `pkgsBuildBuild`: `(?1, x, x)`
2. `pkgsBuildBuild.targetPackages`: `(x, x, ?2)`
3. `pkgsBuildBuild.targetPackages.stdenv.cc`: `(?1, x, x)`
 2021-04-30 05:41:00 +00:00
Dominic Steinitz
732ab3d4e2 Incorporate suggeston by collares 2021-04-29 17:34:34 +01:00
github-actions[bot]
01105a117a
Merge staging-next into staging 2021-04-29 06:21:55 +00:00
R. RyanTM
5122077801 gmsh: 4.8.1 -> 4.8.3 2021-04-29 00:17:51 -04:00
erikbackman
95b40e4143 (numworks-epsilon): init at 15.3.2 2021-04-27 19:07:25 +02:00
github-actions[bot]
8634c6f7d1
Merge staging-next into staging 2021-04-26 00:17:03 +00:00
Mauricio Collares
e1ad2f5aa4 sage: remove cypari2 override 
This reverts commit c12ef05bda.
 2021-04-25 18:21:58 -03:00
Michael Raskin
14f65f0dc5
Merge pull request #116365 from omasanori/sage-9.3 
sage: 9.2 -> 9.3
 2021-04-25 21:17:32 +00:00
github-actions[bot]
9a945aac72
Merge staging-next into staging 2021-04-25 18:14:18 +00:00
Eduardo Sánchez Muñoz
6b9e396a07 qalculate-gtk: 3.17.0 -> 3.18.0 2021-04-25 16:17:26 +02:00
github-actions[bot]
0d97d9f23b
Merge staging-next into staging 2021-04-23 00:15:42 +00:00
github-actions[bot]
481a9bc47c
Merge master into staging-next 2021-04-23 00:15:39 +00:00
R. RyanTM
e230004975 calc: 2.12.9.1 -> 2.13.0.1 2021-04-22 06:59:52 +00:00
Masanori Ogino
090b71f627 sage: 9.2 -> 9.3.rc4 
Co-authored-by: Mauricio Collares <mauricio@collares.org>
 2021-04-22 14:06:56 +09:00
Mauricio Collares
00d2e24395 eclib: 20210223 -> 20190909 
This reverts commits 003705ef08
and ef615b5a61.
 2021-04-22 14:06:56 +09:00
Garaba Flórián
a0f410646c sage: use threejs fork 2021-04-22 14:06:56 +09:00
Mauricio Collares
090165d7c1 singular: disable vspace on aarch64 2021-04-22 14:06:56 +09:00
Mauricio Collares
cd7cf5942b singular: use older autoconf macro to unbreak aarch64 2021-04-22 09:01:30 +09:00
Mauricio Collares
aebef1703f singular: import aarch64 support patch 2021-04-22 09:01:07 +09:00
Timo Kaufmann
ceaf48fdb2 singular: 4.1.1p2 -> 4.2.0p2 
Adds proper tests. Also removes the "enableFactory" option because
singular actually enables factory by default and explicitly disabling it
breaks the build. So the option was never really available.
 2021-04-22 09:01:07 +09:00
Mauricio Collares
cd215e793a pynac: 0.7.26 -> 0.7.27 2021-04-22 09:01:07 +09:00
Mauricio Collares
79046fb4f8 gap: 4.10.2 -> 4.11.0 2021-04-22 09:01:07 +09:00
github-actions[bot]
cf0edc0dea
Merge staging-next into staging 2021-04-20 06:06:28 +00:00
github-actions[bot]
e605a07cc0
Merge master into staging-next 2021-04-20 06:06:25 +00:00
R. RyanTM
44a83a3cb6 gmsh: 4.8.0 -> 4.8.1 2021-04-19 22:37:39 -04:00
Alyssa Ross
e459db3f81 glsurf: fix license 
The README says GPL 2 or any later version, not LGPL.
 2021-04-16 14:06:10 +00:00
Alyssa Ross
70e33e3ae3 glsurf: use current giflib 
This requires bumping the version of camlimages used by glsurf to a
version that supports current giflib.  The most recent versions of
camlimages (even of 4.x) don't support ocaml 4.01 any more, so I've
upgraded to 4.1.2 here, the last version that supports ocaml 4.01 (and
which happily supports current giflib).
 2021-04-16 14:06:10 +00:00
Alyssa Ross
6e3b5fd046 libungif: remove in favour of giflib 
libungif was merged into giflib in 2006, and hasn't been updated
since.  All non-broken packages still using it build fine with giflib.

See <http://giflib.sourceforge.net/history.html>.
 2021-04-16 14:06:10 +00:00
github-actions[bot]
1bd1969867
Merge staging-next into staging 2021-04-06 18:15:33 +00:00
voidless
b6c315b4fb geogebra6: 6_0_620_0 -> 6_0_631_0 2021-04-06 10:52:30 +02:00
Frederik Rietdijk
1e7ed8b2f3
Merge branch 'staging' into python-unstable 2021-04-04 12:59:12 +02:00
Frederik Rietdijk
c12ef05bda sage: keep cypari2 at 2.1.1 2021-04-03 17:49:44 +02:00
Frederik Rietdijk
7368564f99 gurobi: stay with python2 2021-04-03 17:06:08 +02:00
Frederik Rietdijk
ee258981bf ginac: use python3 2021-04-03 17:06:07 +02:00
R. RyanTM
190a6f04b6 calc: 2.12.9.0 -> 2.12.9.1 2021-03-27 07:21:16 +00:00
Dominic Steinitz
9eb60bee0e Fix https://github.com/NixOS/nixpkgs/issues/117715 2021-03-26 18:18:42 +00:00
Timo Kaufmann
82e1bfa53d
Merge pull request #117123 from collares/cypari-update 
cypari2, cysignals: updates
 2021-03-24 21:38:04 +00:00
Mauricio Collares
812ffed96b gap: backport aarch64 patch 2021-03-23 22:09:29 -03:00
Mauricio Collares
594eda3b7d sage: patch intermittently failing test 2021-03-23 22:09:29 -03:00
Mauricio Collares
15fd117e71 cypari2: 2.1.1 -> 2.1.2 
* cypari2: 2.1.1 -> 2.1.2, patch to fix segfault

* sage: update test expectations
 2021-03-23 22:09:29 -03:00
Sandro
1c3d923aaa
Merge pull request #115685 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 20.06.6 -> 21.02.0
 2021-03-22 01:08:42 +01:00
Mauricio Collares
c0b869f19f sage: re-add pkgconfig input, it's not duplicated 2021-03-20 06:43:23 -03:00
Jan Tojnar
0136206b12
Merge branch 'master' into staging-next 2021-03-18 13:35:59 +01:00
Sandro
fe4a249718
Merge pull request #116594 from NixOS/SuperSandro2000-patch-1 
sage: remove duplicated pkgconfig
 2021-03-17 11:10:10 +01:00
Sandro
2d01f4a96a
sage: remove duplicated pkgconfig 2021-03-17 09:24:07 +01:00
Samuel Gräfenstein
b72ee5775c
treewide: gnome2.gtk -> gtk2 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:16 +01:00