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Author SHA1 Message Date
R. RyanTM
215011c44d gromacs: 2020.2 -> 2020.3 2020-07-13 07:11:49 +00:00
Daniël de Kok
a36e044be2
Merge pull request #92957 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.0.8 -> 4.0.9
 2020-07-12 07:37:29 +02:00
Ben Wolsieffer
060c1ef6a5 qgroundcontrol: 4.0.8 -> 4.0.9 2020-07-11 15:27:23 -04:00
Florian Klink
785b558e66
Merge pull request #92781 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.104 -> 3.3.105
 2020-07-11 13:57:57 +02:00
Timo Kaufmann
9aab32b51c
Merge pull request #92796 from r-ryantm/auto-update/jmol 
jmol: 14.31.0 -> 14.31.2
 2020-07-09 18:43:50 +02:00
Austin Seipp
44f8640ae4
mcy: 2020.03.21 -> 2020.07.06 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-07-09 10:33:09 -05:00
R. RyanTM
46e8ec7927 jmol: 14.31.0 -> 14.31.2 2020-07-09 14:44:34 +00:00
Austin Seipp
a8e8e99458
symbiyosys: 2020.05.18 -> 2020.07.03 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-07-09 09:12:41 -05:00
Austin Seipp
63e55fae00
yosys: 2020.06.19 -> 2020.07.07 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-07-09 09:12:41 -05:00
R. RyanTM
6e3fd6892c gtkwave: 3.3.104 -> 3.3.105 2020-07-09 10:06:28 +00:00
Jörg Thalheim
141f9ce807
cryptominisat: 5.7.1 -> 5.8.0 (#92681) 
Co-authored-by: Jörg Thalheim <joerg@thalheim.io>
 2020-07-09 08:24:55 +01:00
Jörg Thalheim
223c91d032 cryptominisat: use fetchpatch 2020-07-09 08:21:21 +01:00
Jörg Thalheim
e3d703bb92 cryptominisat: fix build on darwin 2020-07-09 08:11:28 +01:00
Daniël de Kok
26d250d4b3
Merge pull request #92738 from r-ryantm/auto-update/yacas 
yacas: 1.8.0 -> 1.9.1
 2020-07-09 09:02:26 +02:00
R. RyanTM
d27df249ee yacas: 1.8.0 -> 1.9.1 2020-07-08 18:25:49 +00:00
R. RyanTM
3628d0d893 cryptominisat: 5.7.1 -> 5.8.0 2020-07-08 04:51:18 +00:00
R. RyanTM
02fe1ec6ec gwyddion: 2.55 -> 2.56 2020-07-07 10:11:50 -07:00
R. RyanTM
e6113be804 seaview: 5.0.2 -> 5.0.4 2020-07-07 13:30:35 +00:00
Benjamin Hipple
0f94e2413d
Merge pull request #91071 from bcdarwin/minc-tools-build-nifti-tools 
minc-tools: actually build Nifti support
 2020-07-06 17:45:48 -04:00
Ben Darwin
28becad9be minc-tools: actually build Nifti support 2020-07-06 11:09:33 -04:00
Justin Bedo
3139597277
whisper: init at 2.0.1 2020-07-06 18:59:45 +10:00
Benjamin Hipple
4f4e0477b7
Merge pull request #90320 from wucke13/apmplanner-2 
apmplanner2: 2.0.27-rc1 -> 2.0.28-rc1
 2020-07-05 20:23:52 -04:00
Benjamin Hipple
b82bdcd3c3
Merge pull request #90311 from wucke13/betaflight-configurator 
betaflight-configurator: 10.6.0 -> 10.7.0
 2020-07-05 19:52:10 -04:00
Ryan Mulligan
9dcf134813
Merge pull request #92317 from r-ryantm/auto-update/last 
last: 1061 -> 1066
 2020-07-05 16:09:42 -07:00
R. RyanTM
c0ebe721a9 marvin: 20.13.0 -> 20.15.0 2020-07-05 15:06:16 +00:00
R. RyanTM
12b36a950b ltl2ba: 1.2 -> 1.3 2020-07-05 14:25:04 +00:00
R. RyanTM
aca998de5e last: 1061 -> 1066 2020-07-05 08:43:25 +00:00
Mario Rodas
c70f0c6548
Merge pull request #92257 from r-ryantm/auto-update/tebreak 
tebreak: 1.0 -> 1.1
 2020-07-04 12:45:00 -05:00
R. RyanTM
d8956ba50e tebreak: 1.0 -> 1.1 2020-07-04 10:45:49 +00:00
Dmitry Kalinkin
b234812a38
Merge pull request #92127 from veprbl/pr/snakemake_5_19_3 
snakemake: 5.17.0 -> 5.19.3
 2020-07-03 14:03:37 -04:00
Mario Rodas
212b0d32ca
Merge pull request #92169 from r-ryantm/auto-update/gmsh 
gmsh: 4.5.6 -> 4.6.0
 2020-07-03 07:59:10 -05:00
R. RyanTM
97c089f2f7 gmsh: 4.5.6 -> 4.6.0 2020-07-03 11:56:48 +00:00
Dmitry Kalinkin
eb121e0901
snakemake: 5.17.0 -> 5.19.3 2020-07-02 23:36:20 -04:00
R. RyanTM
6630edb1bd picard-tools: 2.23.0 -> 2.23.1 2020-07-02 18:09:49 -07:00
R. RyanTM
a07fe7164b workcraft: 3.2.6 -> 3.3.0 2020-07-02 10:07:55 -07:00
Gabriel Ebner
ab4bc959e7
Merge pull request #92044 from r-ryantm/auto-update/lean 
lean: 3.16.2 -> 3.16.5
 2020-07-02 15:27:58 +02:00
R. RyanTM
39ee2ab9c0 lean: 3.16.2 -> 3.16.5 2020-07-02 13:12:58 +00:00
Vincent Laporte
d34bde6ac7 why3: compatibility with JSoO 3.6.0 2020-06-28 09:59:04 +02:00
Markus Kowalewski
187b4a2e04
root: add license 2020-06-27 00:43:21 +02:00
Markus Kowalewski
52f9aebe64
qalculate-gtk: add license 2020-06-27 00:37:44 +02:00
Markus Kowalewski
c317091b5a
mrbayes: fix license 2020-06-26 11:06:35 +02:00
Markus Kowalewski
83dda57082
emboss: fix license 2020-06-26 11:05:24 +02:00
zowoq
c7e61112df treewide: remove deprecated value Application from makeDesktopItem 2020-06-25 12:18:37 +10:00
Daniël de Kok
5f0cf22c59 cadical: enable tests 2020-06-24 15:10:53 -07:00
Maximilian Bosch
44b3530cf1
Merge pull request #90491 from shnarazk/cadical-1.3.0-PR 
cadical: 1.2.1 -> 1.3.0
 2020-06-23 23:33:10 +02:00
Maximilian Bosch
3c3840ecd6
stellarium: 0.20.1 -> 0.20.2 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.2
 2020-06-22 20:30:42 +02:00
Sébastien Maret
b307674e02
gildas: 20200201_a -> 20200601_b (#91096) 2020-06-19 10:40:38 -04:00
Vincent Laporte
a8bb61222f coq_8_12: init at 8.12+β1 2020-06-19 12:28:42 +02:00
Dmitry Kalinkin
df3a188b46
root5: 5.34.36 -> 5.34.38 
Fixes: https://nvd.nist.gov/vuln/detail/CVE-2017-1000203
 2020-06-18 16:42:02 -04:00
R. RyanTM
7b104edf89 eagle: 9.6.1 -> 9.6.2 2020-06-17 11:04:13 -07:00
Austin Seipp
9954d5a583
verilator: 4.034 -> 4.036 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-06-16 11:19:57 -05:00
Narazaki, Shuji
d6c90aea17 cadical: 1.2.1 -> 1.3.0 2020-06-15 22:56:41 +09:00
Ryan Mulligan
c2df0fb59a
Merge pull request #90419 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.9 -> 2.23.0
 2020-06-15 05:48:36 -07:00
R. RyanTM
57a49ce3a4 picard-tools: 2.22.9 -> 2.23.0 2020-06-15 00:57:30 +00:00
Steve Purcell
af76ba6c57 fastdownward: 2019-05-13 -> 19.12 
- Use supplied build.py mechanism instead of working around it
- Freeze release location into resulting Python so fast-downward script actually works
 2020-06-15 10:40:53 +12:00
R. RyanTM
e63bfcef96 lean: 3.15.0 -> 3.16.2 2020-06-14 19:32:20 +00:00
wucke13
6bd79857e9 apmplanner2: 2.0.27-rc1 -> 2.0.28-rc1 2020-06-14 13:27:38 +02:00
wucke13
e4183aaa76 betaflight-configurator: 10.6.0 -> 10.7.0 2020-06-14 12:32:59 +02:00
Steve Purcell
1058f8f8cf fast-downward: also build on darwin 2020-06-14 17:55:14 +12:00
Austin Seipp
23c9c3779d
symbiyosys: 2020.03.24 -> 2020.05.18 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-06-11 23:14:07 -05:00
Austin Seipp
13e52db31e
yosys: 2020.03.24 -> 2020.06.11 
Also includes a bump to `abc-verifier`.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-06-11 23:14:07 -05:00
Vladimír Čunát
a5f5d020c6
Merge branch 'staging-next' 2020-06-10 16:13:48 +02:00
Ryan Mulligan
d456800b17
Merge pull request #90045 from r-ryantm/auto-update/marvin 
marvin: 20.12.0 -> 20.13.0
 2020-06-10 06:01:10 -07:00
markuskowa
86d193c305
Merge pull request #90013 from r-ryantm/auto-update/jmol 
jmol: 14.30.2 -> 14.31.0
 2020-06-10 14:41:33 +02:00
R. RyanTM
0f890be404 marvin: 20.12.0 -> 20.13.0 2020-06-10 12:01:26 +00:00
R. RyanTM
c04e2c41ca jmol: 14.30.2 -> 14.31.0 2020-06-10 03:50:47 +00:00
Jan Tojnar
c637cbe992
Merge branch 'master' into staging-next 2020-06-10 04:10:34 +02:00
R. RyanTM
b1049a61f1 star: 2.7.3a -> 2.7.4a 2020-06-09 02:32:13 +00:00
Symphorien Gibol
0a488516be boolector: 3.0.0 -> 3.2.1 
enable tests
optionnally enable gmp
 2020-06-08 17:32:07 -05:00
Symphorien Gibol
90b75531a5 btor2tools: pre55 -> 1.0.0-pre 
version comes from the VERSION file in the repo
 2020-06-08 17:32:07 -05:00
Frederik Rietdijk
dc33419285 Merge master into staging-next 2020-06-08 12:06:12 +02:00
1000101
277bbb8efe formatting: fix missing leading whitespace 2020-06-08 09:37:17 +02:00
Ryan Mulligan
38b720e653
Merge pull request #89667 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.8 -> 2.22.9
 2020-06-07 15:38:23 -07:00
Frederik Rietdijk
155382cae3
Merge pull request #89515 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 3.5.5 -> 4.0.8
 2020-06-07 15:57:35 +02:00
Frederik Rietdijk
6b8223e634 Merge master into staging-next 2020-06-07 09:25:12 +02:00
Markus Kowalewski
5dbe275aac
molden: 6.2 -> 6.3 2020-06-06 23:41:01 +02:00
R. RyanTM
170ea57065 picard-tools: 2.22.8 -> 2.22.9 2020-06-06 15:43:25 +00:00
R. RyanTM
25300419fd lean: 3.14.0 -> 3.15.0 2020-06-06 10:55:48 +00:00
Sohalt
877af72161
Fixup 
Co-authored-by: puzzlewolf <23097564+puzzlewolf@users.noreply.github.com>
 2020-06-05 12:44:13 +02:00
Ben Wolsieffer
5d3c56822a qgroundcontrol: 3.5.5 -> 4.0.8 2020-06-04 19:06:45 -04:00
Frederik Rietdijk
08900c0554 Merge master into staging-next 2020-06-04 15:25:54 +02:00
Lassulus
a15262665a
Merge pull request #88466 from puzzlewolf/gazebo_remove 
gazebo: remove
 2020-06-04 12:47:42 +02:00
Daiderd Jordan
7b3a2963d1
treewide: replace base64 encoded hashes 2020-06-03 18:35:19 +02:00
zimbatm
9f15e95ff2
Merge pull request #89308 from LnL7/remove-sri-hashes 
Remove sri hashes
 2020-06-02 16:24:01 +02:00
Timo Kaufmann
374016fb1c
Merge pull request #89111 from timokau/gap-cleanup 
gap: cleanup
 2020-06-02 10:55:46 +02:00
Daiderd Jordan
b7ddbd52bd
treewide: replace SRI hashes 2020-06-01 15:24:19 +02:00
puzzlewolf
3b26ba8b91 maintainers: remove pxc 2020-05-30 18:38:37 +02:00
puzzlewolf
c906c45fec gazebo, sdformat: remove 2020-05-30 18:38:28 +02:00
Jonathan Ringer
3a4fec8232 mxnet: use blas.provider, fix build 2020-05-28 15:08:47 -07:00
Timo Kaufmann
6579f814cf gap: remove explicit configreFlags 
System gmp is now the default.
 2020-05-28 16:07:38 +02:00
Timo Kaufmann
d689f3fe72 gap: add readline support 
Technically optional but strongly recommended from upstream. Replaces
their own implementation for input parsing.
 2020-05-28 16:06:34 +02:00
Timo Kaufmann
f15c816584 gap: use https for the homepage 2020-05-28 15:58:41 +02:00
Timo Kaufmann
9e245a0878 gap: fix comment typo 2020-05-28 15:57:50 +02:00
Timo Kaufmann
e2e45e163c gap: remove m4 dependency 
No longer necessary, since the build system was significantly overhauled
/ replaced by Max Horn.
 2020-05-28 15:55:07 +02:00
Timo Kaufmann
c269b51c38 gap: move to new source URL 
GAP downloads moved to a new subdomain. The old one still redirects, but
the new one is the "source of truth" so we should switch to that.
 2020-05-28 15:53:56 +02:00
Timo Kaufmann
a4c76b970c gap: use the check target for install checks 
As suggested by Max Horn.

This exists since gap 4.10 and will only run the install checks once
while also exiting with an appropriate exit code. This new check has
uncovered some test failures, which are harmless and actually disabled
in a future gap release. The error-detection code for the previous test
target was probably broken.
 2020-05-28 15:50:46 +02:00
Timo Kaufmann
d34fa6ed44
Merge pull request #89058 from timokau/palp-2.11-hash-fixup-2 
palp: fix hash
 2020-05-27 22:34:12 +00:00
Timo Kaufmann
b74991703a palp: fix hash 
The file was modified for the second time now. I'll try to contact
upstream about this. Maybe 2.11 is not actually a finished product yet.
 2020-05-28 00:20:30 +02:00
R. RyanTM
8295aa6d8b cryptominisat: 5.7.0 -> 5.7.1 2020-05-27 13:51:14 -07:00
R. RyanTM
f4e01832ed marvin: 20.10.0 -> 20.12.0 2020-05-27 12:11:37 -07:00
R. RyanTM
5841bc46f8 proverif: 2.00 -> 2.01 2020-05-27 12:07:52 -07:00
Jörg Thalheim
660854a266
Merge pull request #88916 from zowoq/patches 2020-05-27 06:54:01 +01:00
Benjamin Hipple
f04a5af0cc
Merge pull request #82180 from bcdarwin/bppcore 
bppsuite: init at 2.4.1
 2020-05-26 21:07:25 -04:00
Lassulus
ed25a12070
Merge pull request #70487 from esclear/xflr5 
xflr5: init at 6.47
 2020-05-27 00:00:05 +02:00
zowoq
cb4cc7a480 sad: use patch file extension 2020-05-26 14:50:50 +10:00
Benjamin Hipple
d3082a31cd
Merge pull request #87544 from bcdarwin/vtk-8 
vtk: 7.1.1 -> 8.2.0
 2020-05-26 00:24:28 -04:00
Ben Darwin
45cd7beeb2 bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
Ryan Mulligan
85898181b0
Merge pull request #88844 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.7 -> 2.22.8
 2020-05-25 06:09:11 -07:00
Mario Rodas
bc4469005e
Merge pull request #88824 from r-ryantm/auto-update/lean 
lean: 3.13.1 -> 3.14.0
 2020-05-24 22:49:35 -05:00
R. RyanTM
a60a040236 picard-tools: 2.22.7 -> 2.22.8 2020-05-25 01:25:17 +00:00
R. RyanTM
7573e99a60 lean: 3.13.1 -> 3.14.0 2020-05-24 22:22:11 +00:00
R. RyanTM
c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 (#88766) 2020-05-24 13:32:14 -04:00
Dmitry Kalinkin
9eb3f39bca
Merge pull request #88713 from veprbl/pr/sherpa_2_2_10 
sherpa: 2.2.9 -> 2.2.10
 2020-05-23 21:56:57 -04:00
Dmitry Kalinkin
e6282f9f6c
sherpa: 2.2.9 -> 2.2.10 2020-05-23 16:22:08 -04:00
Ryan Mulligan
5505be7840
Merge pull request #88568 from r-ryantm/auto-update/last 
last: 1060 -> 1061
 2020-05-23 11:42:47 -07:00
Frederik Rietdijk
bc3c3b4a59 pythonPackages.kicad: bindings to kicad 
Add the Python bindings for kicad.

Following now functions

    $ nix run "(import ./. {}).python3.withPackages(ps: with ps; [ kicad  ])" -c python3 -c "import pcbnew"

Have not tested this any further.
 2020-05-23 15:44:14 +02:00
Mario Rodas
d30b7592c4
Merge pull request #88363 from r-ryantm/auto-update/clp 
clp: 1.17.5 -> 1.17.6
 2020-05-23 00:31:57 -05:00
R. RyanTM
25841d95c5 last: 1060 -> 1061 2020-05-22 02:21:55 +00:00
zimbatm
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol 
fahcontrol: 7.6.9 -> 7.6.13
 2020-05-21 12:12:37 +02:00
zimbatm
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer 
fahviewer: 7.6.9 -> 7.6.13
 2020-05-21 12:12:01 +02:00
R. RyanTM
f52889cd38 fahviewer: 7.6.9 -> 7.6.13 2020-05-21 08:53:14 +00:00
Evils
d798396684 kicad-unstable: 2020-05-06 -> 2020-05-14 2020-05-21 10:49:18 +02:00
Evils
a791245d51 kicad: 5.1.5 -> 5.1.6 2020-05-21 10:49:18 +02:00
R. RyanTM
0cc843b538 fahcontrol: 7.6.9 -> 7.6.13 2020-05-21 06:24:27 +00:00
Vincent Laporte
48f0d8b3c8 coq_8_11: 8.11.1 → 8.11.2 2020-05-20 19:21:42 +02:00
Timo Kaufmann
b811d52b9c
Merge pull request #88428 from timokau/nauty-27r1 
nauty: 26r12 -> 27r1
 2020-05-20 13:22:15 +00:00
Timo Kaufmann
d0e171395a nauty: 26r12 -> 27r1 
Changes: http://pallini.di.uniroma1.it/changes24-27.txt
 2020-05-20 14:59:46 +02:00
Timo Kaufmann
a276c4485c nauty: add meta.changelog 2020-05-20 14:59:46 +02:00
Ryan Mulligan
aae8733f96
Merge pull request #88210 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.4 -> 2.22.7
 2020-05-20 05:08:01 -07:00
R. RyanTM
d1b7e3f8cc clp: 1.17.5 -> 1.17.6 2020-05-20 10:04:01 +00:00
R. RyanTM
3450729658 picard-tools: 2.22.4 -> 2.22.7 2020-05-19 21:56:38 +00:00
Timo Kaufmann
7447395f9d
Merge pull request #88177 from timokau/palp-2.11-hash-fixup 
palp: fix hash
 2020-05-19 18:43:59 +00:00
Timo Kaufmann
aae9af9632 palp: fix hash 
It looks like the upstream tarball was changed since I updated palp 3
days ago. Hopefully that won't happen again.
 2020-05-19 17:50:43 +02:00
Gabriel Ebner
ade0eba99d
Merge pull request #88131 from r-ryantm/auto-update/elan 2020-05-19 09:38:28 +02:00
Lancelot SIX
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0 
cytoscape: 3.7.2 -> 3.8.0
 2020-05-19 08:32:48 +01:00
R. RyanTM
748e2fcf6c elan: 0.10.0 -> 0.10.2 2020-05-19 05:02:43 +00:00
Timo Kaufmann
91da9ed129
Merge pull request #87944 from timokau/palp-2.11 
palp: 2.1 -> 2.11
 2020-05-18 19:58:59 +00:00
Ryan Mulligan
fdf4439acc
Merge pull request #87494 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.0 -> 3.14.1
 2020-05-18 08:06:19 -07:00
Timo Kaufmann
d65850e975 palp: 2.1 -> 2.11 
According to the homepage[1]:

> Small change in Mori.h for compatibility with gcc_10 (thanks to J.
  Puydt) [May 15, 2020].

Disabling the strictoverflow seems to be no longer necessary (I'm
relying on the check phase here).

[1] http://hep.itp.tuwien.ac.at/~kreuzer/CY/CYpalp.html
 2020-05-16 15:07:57 +02:00
Timo Kaufmann
51de320353 palp: add meta.changelog 2020-05-16 15:05:45 +02:00
Mario Rodas
b022ecbf5d
lean: 3.10.0 -> 3.13.1 2020-05-16 04:20:00 -05:00
Matt Huszagh
e8215cd634 colmap: update boost to 1.72 to fix build 2020-05-15 09:42:36 -07:00
R. RyanTM
d11e5f1a4e verilator: 4.032 -> 4.034 2020-05-12 22:27:21 -07:00
R. RyanTM
e07dfd38f1 wxmaxima: 20.02.4 -> 20.04.0 2020-05-12 22:12:53 -07:00
Ben Darwin
5e716bf469 vtk: 7.1.1 -> 8.2.0 
- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5
 2020-05-11 17:54:29 -04:00
Jörg Thalheim
3a9543b778
Merge pull request #82634 from evils/kicad 2020-05-11 10:27:18 +01:00
R. RyanTM
ae4d9cb9a0 stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00
R. RyanTM
92d970c766
snakemake: 5.15.0 -> 5.16.0 (#87496) 2020-05-10 10:09:53 -04:00
R. RyanTM
85b39960b5 SPAdes: 3.14.0 -> 3.14.1 2020-05-10 13:06:19 +00:00
sohalt
7bf616dd77 Correct license 2020-05-10 00:49:56 +02:00