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2159 commits

Author SHA1 Message Date
Frederik Rietdijk
1d196d99be Merge staging-next into staging 2018-10-30 20:35:15 +01:00
Jörg Thalheim
8df0ca2bbc
coq_8_4: remove 
verasco was its only user
 2018-10-30 13:31:11 +00:00
Tuomas Tynkkynen
067d1cf330 Merge remote-tracking branch 'upstream/master' into staging 
Conflicts:
	pkgs/applications/science/math/sage/sage-src.nix
 2018-10-27 19:58:03 +03:00
Timo Kaufmann
2513747356 sage: fix attrname 
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
 2018-10-27 14:18:08 +02:00
Timo Kaufmann
7970a5a475
Merge pull request #49225 from timokau/arb-2.15.1 
arb: 2.14.0 -> 2.15.1
 2018-10-27 12:36:51 +02:00
Timo Kaufmann
fbea2cd77a arb: 2.14.0 -> 2.15.1 2018-10-27 11:27:03 +02:00
Timo Kaufmann
2ce2fcfc30 pythonPackages.cython: 0.28.5 -> 0.29 
Needs a sage patch from
https://trac.sagemath.org/ticket/25292
 2018-10-24 20:05:44 +02:00
Joachim F
b6a5cd8970
Merge pull request #48812 from mpickering/cedille 
cedille bug fixes
 2018-10-24 15:29:47 +00:00
R. RyanTM
c759273e2e star: 2.6.1a -> 2.6.1c 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
 2018-10-24 15:22:22 +02:00
Timo Kaufmann
db75fe7313 sage: fix doctest 
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
 2018-10-22 14:52:19 +02:00
Matthew Pickering
08e5ef20d8 cedille: Make a seperate output for the base library 
For now, for normal usage you need to add `${cedille.lib}` to
the `~/.cedille/options` file so that cedille will find the base
libraries. There is no option to pass options by the command line.
 2018-10-22 08:43:07 +00:00
Matthew Pickering
f7d4bc2c71 cedille: Apply patch which unbreaks the options file 
See https://github.com/cedille/cedille/issues/29
 2018-10-22 08:42:01 +00:00
Timo Kaufmann
b39142cd1f sage: fix dochtml tests 2018-10-21 19:17:07 +02:00
Timo Kaufmann
38c2be5ffe sage: fix docbuild 
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
 2018-10-21 14:16:06 +02:00
Timo Kaufmann
a413dedde1
Merge pull request #44527 from timokau/sage-8.4 
[WIP] sage: 8.3 -> 8.4
 2018-10-20 01:34:34 +02:00
Vincent Laporte
c091e93b99
Merge pull request #48617 from Zimmi48/passthru-ocamlPackages-in-coq-package 
coq: add ocamlPackages in passthru
 2018-10-19 09:38:07 +00:00
Jörg Thalheim
a595b872c8
Merge pull request #48509 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.94 -> 3.3.95
 2018-10-19 09:29:23 +01:00
Jörg Thalheim
02405cfe83
Merge pull request #48565 from rprospero/sasview-4.2.0 
Sasview: unstable -> 4.2.0
 2018-10-18 21:44:25 +01:00
Jörg Thalheim
84890ac196
Merge pull request #48653 from vbgl/why3-1.1.0 
why3: 1.0.0 -> 1.1.0
 2018-10-18 18:55:10 +01:00
Timo Kaufmann
7ca1c31dfa sage: 8.4.rc1 -> 8.4 2018-10-18 09:58:36 +02:00
Vincent Laporte
bc8d25c1ef
why3: 1.0.0 -> 1.1.0 2018-10-18 05:43:36 +00:00
Jörg Thalheim
4057f2107a
Merge pull request #48511 from r-ryantm/auto-update/gmsh 
gmsh: 4.0.1 -> 4.0.2
 2018-10-17 16:02:01 +01:00
Adam Washington
6be90bf8d7
sasmodels: unstable -> 4.2.0 2018-10-17 14:36:46 +01:00
Théo Zimmermann
fa12476755
coq: add ocamlPackages in passthru 
We might need OCaml packages that are not the one Coq is depending on
but they still need to come from the same package set (same OCaml version).
 2018-10-17 13:26:43 +02:00
Timo Kaufmann
d2b5518e1e
Merge pull request #48507 from r-ryantm/auto-update/jmol 
jmol: 14.29.22 -> 14.29.26
 2018-10-16 10:36:39 +02:00
R. RyanTM
eeb2ee296c gmsh: 4.0.1 -> 4.0.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-10-15 21:54:45 -07:00
R. RyanTM
a721411239 gtkwave: 3.3.94 -> 3.3.95 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
 2018-10-15 21:21:29 -07:00
R. RyanTM
fedc17a99d jmol: 14.29.22 -> 14.29.26 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2018-10-15 21:05:03 -07:00
Matthew Pickering
43ae33728b cedille: init at 1.0.0 2018-10-14 19:17:23 +00:00
R. RyanTM
d074fb1940 verilator: 4.002 -> 4.004 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2018-10-14 09:01:56 +02:00
Moritz Kiefer
6738033727
alt-ergo: 1.30->2.2.0, ocplib-simplex: 0.3->0.4 2018-10-13 17:45:45 +00:00
Timo Kaufmann
f89df0b556 sage: 8.4.rc0 -> 8.4.rc1 2018-10-13 13:27:10 +02:00
Sebastien Maret
4f3c13b84f gildas: 20181001_a -> 20181001_b (#48200) 2018-10-11 11:37:38 +02:00
Vincent Laporte
6113d95235
prooftree: cleaning 2018-10-11 05:59:21 +00:00
Théo Zimmermann
2fdd38ed2d
camlp5_transitional: remove in favor of camlp5 (strict) 2018-10-10 19:44:54 +02:00
Théo Zimmermann
7ac0a23194
prooftree: 0.12 -> 0.13 2018-10-10 19:42:50 +02:00
Théo Zimmermann
c76ffb9253
matita: remove broken package 
As requested by Vincent Laporte.
 2018-10-09 09:47:31 +02:00
Théo Zimmermann
34394a38ef
ocamlPackages_3_11_2: remove 
This requires removing also the Coq 8.3 and Matita 0.5.8 packages.

Coq 8.3 was released 8 years ago (2010) and there is no trace left
of users of this version (contrary to Coq 8.4, released 2012).
It is well over time to remove it.

Matita 0.5.8 was released in 2010 and because this version was still
used for teaching according to the official website, a legacy release
(0.5.9) was released in 5 years later to compile with more recent
OCaml libraries.
Updating to 0.5.9 (or a more recent version like 0.99.3) should allow
getting rid of the dependency on older OCaml but it is hard to test
given that the package is already broken before this update.
 2018-10-08 21:10:05 +02:00
Timo Kaufmann
27919e06f1 sage: 8.4.beta7 -> 8.4.rc0 2018-10-07 12:23:10 +02:00
Marco Maggesi
9a5f7b1630 hol_light: 2017-07-06 -> 2018-09-30 
Also handle compatibility with newer version of OCaml (depend on num
library as needed).
 2018-10-06 15:49:09 +00:00
Matthew Bauer
c4f344ac44
Merge pull request #47291 from veprbl/pr/xfitter_init 
xfitter: init at 2.0.0
 2018-10-05 22:38:09 -05:00
Jörg Thalheim
5200167f12
Merge pull request #47831 from r-ryantm/auto-update/calc 
calc: 2.12.6.6 -> 2.12.6.8
 2018-10-04 23:31:38 +01:00
Jörg Thalheim
a24cf5c4f7
Merge pull request #47845 from r-ryantm/auto-update/bowtie2 
bowtie2: 2.3.4.2 -> 2.3.4.3
 2018-10-04 20:19:35 +01:00
Gabriel Ebner
0a7e258012 elan: 0.5.0 -> 0.7.1 2018-10-04 16:33:36 +02:00
R. RyanTM
269efba0aa bowtie2: 2.3.4.2 -> 2.3.4.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions
 2018-10-03 21:49:10 -07:00
R. RyanTM
904fd99bb4 calc: 2.12.6.6 -> 2.12.6.8 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-10-03 16:01:08 -07:00
R. RyanTM
98092f7a67 nauty: 26r10 -> 26r11 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
 2018-10-03 05:54:07 -07:00
R. RyanTM
609f9198f2 verilator: 3.926 -> 4.002 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2018-10-02 09:56:10 -05:00
Sebastien Maret
34ac35dfc6 gildas: 20180901_a -> 20181001_a (#47657) 
- Update gildas to the latest version
 - Remove a patch that has been applied upstream
 2018-10-02 12:49:33 +02:00
Austin Seipp
919a3b7f9c symbiyosys: 2018.07.26 -> 2018.09.12 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2018-10-01 22:32:54 -05:00