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2571 commits

Author SHA1 Message Date
R. RyanTM
9f68f2a7dc verilator: 4.010 -> 4.012 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2019-04-03 13:43:11 -05:00
markuskowa
e2ce5fd7fe
Merge pull request #58860 from r-ryantm/auto-update/quantum-espresso 
quantum-espresso: 6.3 -> 6.4
 2019-04-03 15:42:40 +02:00
Markus Kowalewski
c109aaa5cb
quantum-espresso: remove outdated makefile fix 2019-04-03 15:00:17 +02:00
markuskowa
126e1f8fd0
Merge pull request #58538 from bzizou/stacks 
stacks: init at 2.3e
 2019-04-03 14:41:00 +02:00
Bruno Bzeznik
e7899d2a00 stacks: init at 2.3e 2019-04-03 14:01:32 +02:00
R. RyanTM
882247fc3f quantum-espresso: 6.3 -> 6.4 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/quantum-espresso/versions
 2019-04-02 15:30:36 -07:00
Timo Kaufmann
69555825f8
eclib: 20180815 -> 20190226 (#58801) 
Needs a sage patch, see
https://trac.sagemath.org/ticket/27360.
 2019-04-02 15:39:20 +00:00
R. RyanTM
5f4e5553bc jmol: 14.29.31 -> 14.29.32 (#58698) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-04-01 20:12:53 +00:00
markuskowa
c637aeff19
Merge pull request #58541 from luispedro/add_megahit 
megahit: init at 1.1.4
 2019-03-31 12:51:59 +02:00
Luis Pedro Coelho
bf48451959 megahit: init at 1.1.4 
This is widely used in bioinformatics for assembling genomes &
metagenomes
 2019-03-31 05:56:14 +02:00
Dmitry Kalinkin
ea757ac59f
Merge pull request #58108 from veprbl/pr/root5_fix 
root5: fix build
 2019-03-30 22:36:23 -04:00
R. RyanTM
893abe12e8 bowtie2: 2.3.4.3 -> 2.3.5 (#58014) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions
 2019-03-31 00:37:38 +01:00
Silvan Mosberger
aadb1cbe26
Merge pull request #58494 from markuskowa/upd-octopus 
octopus: 8.3 -> 8.4
 2019-03-29 20:43:28 +01:00
markuskowa
7701fd7603
Merge pull request #58097 from r-ryantm/auto-update/ginac 
ginac: 1.7.4 -> 1.7.5
 2019-03-29 20:27:39 +01:00
Silvan Mosberger
030b845413
Merge pull request #58492 from markuskowa/upd-molden 
molden: 5.9.3 -> 5.9.5
 2019-03-29 20:16:08 +01:00
geistesk
5e6273df68 stellarium: 0.18.3 -> 0.19.0 2019-03-28 21:21:54 +01:00
markuskowa
403aa2dfed
Merge pull request #58180 from luzpaz/gmsh4.2.2 
gmsh 4.2.1->4.2.2
 2019-03-28 18:11:58 +01:00
Markus Kowalewski
3c19324e2a
octopus: 8.3 -> 8.4 2019-03-28 18:00:41 +01:00
Markus Kowalewski
6ea9c0243b
molden: 5.9.3 -> 5.9.5 2019-03-28 17:39:15 +01:00
R. RyanTM
2ce544a8b1 minimap2: 2.15 -> 2.16 (#57319) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/minimap2/versions
 2019-03-27 23:25:52 +01:00
R. RyanTM
1b73fd1954 paml: 4.9h -> 4.9i (#57354) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/paml/versions
 2019-03-27 15:44:21 +01:00
Bruno Bzeznik
00431493c0 itsx: init at 1.1.1 2019-03-26 15:52:35 +01:00
Joachim F
c9cd1356ea
Merge pull request #56522 from bzizou/messer-slim 
messer-slim: init at 3.2.1
 2019-03-26 00:42:58 +00:00
Gabriel Ebner
4446452347
Merge pull request #58163 from dtzWill/update/qalculate-3 
libqalculate,qalculate-gtk: 2.9.0 -> 3.0.0
 2019-03-23 18:50:24 +01:00
luz.paz
13158c692c gmsh 4.2.1->4.2.2 2019-03-23 12:51:12 -04:00
markuskowa
b10799905c
Merge pull request #58162 from r-ryantm/auto-update/gromacs 
gromacs: 2019 -> 2019.1
 2019-03-23 12:29:48 +01:00
Will Dietz
24484b216a qalculate-gtk: 2.9.0 -> 3.0.0 
http://qalculate.github.io/news.html
 2019-03-23 01:09:17 -05:00
R. RyanTM
c70807aa13 gromacs: 2019 -> 2019.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
 2019-03-22 22:05:26 -07:00
Gabriel Ebner
11318d1ba2 elan: 0.7.4 -> 0.7.5 2019-03-22 11:16:44 +01:00
Jörg Thalheim
70d6db9097
Merge pull request #58065 from r-ryantm/auto-update/eagle 
eagle: 9.1.2 -> 9.3.1
 2019-03-22 07:22:58 +00:00
R. RyanTM
34cba0b001 ginac: 1.7.4 -> 1.7.5 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
 2019-03-21 17:54:31 -07:00
R. RyanTM
6c14a2f3f8 eagle: 9.1.2 -> 9.3.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
 2019-03-21 10:40:06 -07:00
worldofpeace
0353967957 nasc: 0.5.1 -> 0.5.2 
Main improvment is that libqalculatenasc.so is now properly linked

Changelog: https://github.com/parnold-x/nasc/compare/0.5.1...0.5.2
 2019-03-20 23:10:33 -04:00
Gabriel Ebner
52c3ee6c4d elan: 0.7.2 -> 0.7.4 2019-03-20 13:33:24 +01:00
Dmitry Kalinkin
c36f841ec7
root5: fix build 2019-03-20 00:26:13 -04:00
Timo Kaufmann
5fc5881221
sage: backport bugfix (#57794) 2019-03-17 14:36:01 +00:00
Timo Kaufmann
8fc3c033cb
pynac: 0.7.23 -> 0.7.24 (#57791) 
Apparently some python3 related fixes: https://trac.sagemath.org/ticket/27241

Also switch to using pname.
 2019-03-17 14:35:28 +00:00
Stephen
a14a7d958f labelimg: fix build (#57714) 
for #56826 see https://hydra.nixos.org/build/90477186/nixlog/2
 2019-03-15 20:50:03 +01:00
Dmitry Kalinkin
d5f97ae600
Merge pull request #57650 from stephengroat/patch-4 
apmplanner2: fix build
 2019-03-14 15:28:57 -04:00
Alex Branham
1e354a7e40 R: 3.5.2 -> 3.5.3 
Closes https://github.com/NixOS/nixpkgs/pull/57400.
 2019-03-14 19:50:37 +01:00
Stephen
08e4d7cf69 apmplanner2: fix build 
see ArduPilot/apm_planner#1166
 2019-03-14 11:23:20 -07:00
Gabriel Ebner
be261a1ede isabelle: refactor 
Fixes #33337
 2019-03-14 11:48:30 +01:00
Gabriel Ebner
308456a7a7
Merge pull request #57567 from gebner/isabelle-2018 
isabelle: 2017 -> 2018
 2019-03-14 11:25:02 +01:00
Gabriel Ebner
c7f43de43c isabelle: 2017 -> 2018 2019-03-12 14:32:48 +01:00
Sébastien Maret
6f81adb7ee
gildas: 20190301_a -> 20190301_b 2019-03-11 21:43:41 +01:00
worldofpeace
988ed26778
Merge pull request #57363 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.18.25 -> 2.18.27
 2019-03-11 07:13:20 -04:00
R. RyanTM
70815de29c picard-tools: 2.18.25 -> 2.18.27 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-03-11 03:37:34 -07:00
Peter Hoeg
136126ceae
Merge pull request #56498 from ariutta/patch-1 
cytoscape: bump 3.6.1 -> 3.7.1
 2019-03-11 11:20:50 +08:00
Timo Kaufmann
ce96994032
sage: fix docbuild (#57294) 
The docbuild (or rather its tests) failed because sphinx built some
English parts of the documentation in Russian. The added debian patch
fixes that by isolating docbuilding threads in sphinx using
proper subprocesses.
 2019-03-10 21:42:54 +00:00
Timo Kaufmann
3b7fb15182
Merge pull request #57126 from timokau/sage-maxima-downgrade 
sage: downgrade maxima to 5.41
 2019-03-09 20:05:01 +00:00