davidak
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1b78608c69
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Merge pull request #135516 from bzizou/stacks
stacks: Changed license to gpl3Plus
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2021-08-26 03:50:48 +02:00 |
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Justin Bedo
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b1b57ec04e
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fastp: 0.20.1 -> 0.22.0
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2021-08-25 09:52:07 +10:00 |
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Ryan Mulligan
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8c2e2ffe95
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Merge pull request #135212 from r-ryantm/auto-update/stacks
stacks: 2.55 -> 2.59
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2021-08-24 09:03:17 -07:00 |
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Bruno Bzeznik
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a240cd9f4f
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stacks: Changed license to gpl3Plus
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2021-08-24 09:47:24 +02:00 |
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Ryan Mulligan
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997f4452a4
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Merge pull request #135255 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.7 -> 2.26.0
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2021-08-23 20:56:38 -07:00 |
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Jörg Thalheim
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11e5c3ac4b
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bowtie: fix homepage
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2021-08-22 16:08:28 +02:00 |
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R. RyanTM
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742cd80071
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picard-tools: 2.25.7 -> 2.26.0
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2021-08-22 10:47:38 +00:00 |
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R. RyanTM
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67c1256ddd
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stacks: 2.55 -> 2.59
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2021-08-22 07:08:39 +00:00 |
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Sebastián Mancilla
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8f94a33b38
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treewide: ensure pre/post phase hooks are strings
Some derivations use lib.optional or lib.optionals when setting pre/post
phase hooks. Ensure the proper lib.optionalString is used.
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2021-08-20 19:08:42 -04:00 |
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Ryan Mulligan
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ad59a67ec0
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Merge pull request #134444 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.1 -> 2.25.7
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2021-08-17 16:47:31 -07:00 |
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R. RyanTM
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1a23a8bb9e
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picard-tools: 2.25.1 -> 2.25.7
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2021-08-17 13:50:42 +00:00 |
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R. RyanTM
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5693a554e2
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minimap2: 2.17 -> 2.22
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2021-08-14 15:55:35 +00:00 |
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Artturi
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e69c8ea78e
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Merge pull request #111691 from jbedo/bowtie2
bowtie2: resolve missing runtime dependencies
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2021-08-07 04:03:47 +03:00 |
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Sandro
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04b5e62d8d
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Merge pull request #132468 from Stunkymonkey/applications-phases1
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2021-08-05 09:37:57 +02:00 |
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Felix Buehler
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be219752d2
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picard-tools: deprecate phases
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2021-08-03 00:04:29 +02:00 |
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Felix Buehler
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4b883542fe
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varscan: deprecate phases
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2021-08-03 00:04:16 +02:00 |
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Artturin
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f173c77476
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perlPackages.ImageMagick: rename from perlPackages.PerlMagick
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2021-08-02 20:05:00 +03:00 |
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Sandro
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1524f36b3e
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Merge pull request #131627 from jbedo/mosdepth
mosdepth: 0.3.1 -> 0.3.2
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2021-07-29 13:56:24 +00:00 |
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Sandro Jäckel
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cebfbdff37
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mrbayes: 3.2.7 -> 3.2.7a
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2021-07-27 14:30:23 +02:00 |
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Sandro Jäckel
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108ad942fb
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mrbayes: modernize
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2021-07-27 11:53:51 +02:00 |
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Justin Bedo
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d885373469
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mosdepth: 0.3.1 -> 0.3.2
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2021-07-27 09:52:22 +10:00 |
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R. RyanTM
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d943e6aa12
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bedops: 2.4.39 -> 2.4.40
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2021-07-23 01:02:40 +00:00 |
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Sandro
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d5bd34ebf2
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treewide: convert phases that contain ":" to dont* = true (#130500)
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2021-07-18 23:42:48 +02:00 |
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R. RyanTM
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7177212409
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bcftools: 1.11 -> 1.13
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2021-07-10 10:15:10 +00:00 |
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scalavision
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c6ca3545ae
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truvari: 2.0.2 -> 2.1.1 (#126839)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
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2021-06-15 22:14:20 +02:00 |
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R. RyanTM
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089915f634
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bowtie2: 2.4.3 -> 2.4.4
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2021-05-26 23:43:08 -07:00 |
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Stéphan Kochen
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c47425a230
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sambamba: fix darwin build
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2021-05-22 20:56:09 +02:00 |
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Stéphan Kochen
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20f36556dc
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samblaster: fix darwin build
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2021-05-18 13:41:51 +02:00 |
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Sandro
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83c5d21320
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Merge pull request #123083 from stephank/fix-est-sfs-darwin
est-sfs: fix darwin build
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2021-05-17 18:58:33 +02:00 |
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R. RyanTM
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9528bf9fd9
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bowtie2: 2.4.2 -> 2.4.3
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2021-05-16 02:53:03 -04:00 |
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Stéphan Kochen
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d707979a73
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est-sfs: fix darwin build
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2021-05-15 12:10:05 +02:00 |
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Stéphan Kochen
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2adca7ae14
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cd-hit: fix darwin build (#123026)
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2021-05-14 17:27:16 -04:00 |
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Justin Bedo
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40eeb2c6d3
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octopus: 0.7.3 -> 0.7.4
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2021-05-11 08:46:00 +10:00 |
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Luke Granger-Brown
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884cf29501
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dcm2niix: 1.0.20201102 -> 1.0.20210317
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2021-05-02 11:10:40 +00:00 |
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R. RyanTM
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ad5f251230
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dcm2niix: 1.0.20200331 -> 1.0.20201102
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2021-05-02 03:14:11 +00:00 |
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Justin Bedo
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def7c82f88
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octopus: 0.7.1 -> 0.7.3
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2021-04-20 10:13:25 +10:00 |
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Sandro
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28fb287d4b
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Merge pull request #118610 from GregorySchwartz/init/macs2
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2021-04-14 21:15:38 +02:00 |
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Gregory W. Schwartz
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b7763a8287
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macs2: init at 2.2.7.1
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Renamed package, updated version, set pypi, and added import test.
Update pkgs/applications/science/biology/MACS2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Add comment about error for checking.
Two spaces indent.
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2021-04-14 10:17:53 -04:00 |
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Gregory Schwartz
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9bf867612d
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meme-suite: init at 5.1.1 (#118603)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
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2021-04-05 22:43:27 +02:00 |
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Sandro Jäckel
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3453b89f4b
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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Ryan Mulligan
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f3262c2a3e
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Merge pull request #117648 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.0 -> 2.25.1
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2021-03-29 16:10:25 -07:00 |
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Justin Bedo
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76bd953162
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bedops: init 2.4.39
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2021-03-28 22:27:51 -04:00 |
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R. RyanTM
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49e4c1e323
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picard-tools: 2.25.0 -> 2.25.1
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2021-03-26 03:16:44 +00:00 |
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Frederik Rietdijk
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5a5cb718a5
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bedtools: use python3
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2021-03-25 10:42:32 +01:00 |
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Frederik Rietdijk
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2c00aed6b1
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bcftools: use python3
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2021-03-25 10:39:47 +01:00 |
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Bruno Bzeznik
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f0eef16f9c
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SPAdes: 3.15.1 -> 3.15.2 + fix license and platform
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2021-03-23 10:51:01 +01:00 |
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Jan Tojnar
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2445e9a681
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Merge branch 'master' into staging-next
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2021-03-18 19:24:39 +01:00 |
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Thomas Mader
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09acdfde94
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sambamba: 0.7.1 -> 0.8.0
Getting rid of dmd dependency and compile with ldc
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2021-03-18 17:41:30 +02:00 |
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Martin Weinelt
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0241873f7f
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Merge branch 'master' into staging-next
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2021-03-14 17:35:32 +01:00 |
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Ryan Mulligan
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0e63a1bb33
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Merge pull request #115579 from r-ryantm/auto-update/stacks
stacks: 2.53 -> 2.55
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2021-03-14 07:47:22 -07:00 |
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