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5434 commits

Author SHA1 Message Date
Christopher Ostrouchov
427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June c0b9308988.
 2018-09-07 09:26:07 +02:00
Christopher Ostrouchov
6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov
b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov
b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
Christopher Ostrouchov
7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
Chris Ostrouchov
1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Matthieu Coudron
13050ccc0b python3Packages.genanki: init at 0.6.0 
Library to generate anki flashcards.
 2018-09-06 18:31:57 +02:00
Jörg Thalheim
89571b255e
Merge pull request #45996 from teto/alot_completion 
[rdy] pythonPackages.alot: install zsh completion
 2018-09-06 11:28:09 +01:00
Jörg Thalheim
9a585658e2
Merge pull request #46132 from costrouc/costrouc/pymatgen-networkx-dependency 
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1
 2018-09-06 09:55:18 +01:00
Sarah Brofeldt
a59f244b2c
Merge pull request #46126 from flokli/gmpy-phe 
pythonPackages: cleanup gmpy[2], add phe
 2018-09-06 10:31:56 +02:00
Sarah Brofeldt
574f893507
Merge pull request #46124 from erosennin/pymetar-1.0 
pythonPackages.pymetar: 0.21 -> 1.0
 2018-09-06 10:26:32 +02:00
Jörg Thalheim
df2cc4121b
Merge pull request #46125 from ashgillman/nipype-futures-py2-only 
python.pkgs.nipype: Futures is python 2 only. Also fix building.
 2018-09-06 08:25:33 +01:00
Chris Ostrouchov
63cf879d6c
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Florian Klink
e053386c92 gmpy2: 2.0.6 -> 2.0.8 
Also move outside python-packages.nix
 2018-09-05 23:56:20 +02:00
Florian Klink
7339a4004c gmpy: move outside python-packages.nix 2018-09-05 23:56:20 +02:00
Florian Klink
f051f66c9a phe: init at 1.4.0 2018-09-05 23:56:20 +02:00
Robert Schütz
041043420f python.pkgs.py3status: fix build 2018-09-05 23:28:31 +02:00
Ashley Gillman
12c0dd5432 python.pkgs.nipype: Futures is python 2 only. Also fix building. 2018-09-05 22:26:34 +01:00
Andrey Golovizin
7de5708e9e pythonPackages.pymetar: enable tests 2018-09-05 23:08:47 +02:00
Andrey Golovizin
ee841c57bf pythonPackages.pymetar: 0.21 -> 1.0 2018-09-05 22:32:57 +02:00
Andrey Golovizin
085cc29323 pythonPackages.pymetar: fix license 2018-09-05 22:32:49 +02:00
Jethro Kuan
a9a380b259 pythonPackages.tflearn: 0.2.1 -> 0.3.2 (#46102) 2018-09-05 17:38:23 +01:00
Daniël de Kok
348a153781 pythonPackages.thinc: fix darwin build (#46092) 
thinc uses Accelerate on macOS as a blas library. Add the necessary
dependencies to allow building on unsandboxed Darwin machines.
 2018-09-05 16:22:52 +02:00
Daniël de Kok
da8475736e spacy: relax dependency versions 2018-09-05 10:39:03 +02:00
Daniël de Kok
ffb094f939 thinc: relax dependency version requirements 2018-09-05 10:29:01 +02:00
Andreas Rammhold
d814c98ec8 python.pkgs.pytest-fixture-config: disable tests (#46021) 
Tests seem to fail on all recent versions even outside of our build
system. The upstream CI tests seem to somehow succeed but I wasn't able
to reproduce that locally. For not it is probably best to disable them.
 2018-09-05 01:02:06 +02:00
xeji
d22e22e2dd
Merge pull request #45987 from danieldk/fix-vowpalwabbit 
vowpalwabbit: fix build against boost-python.
 2018-09-04 08:54:00 +02:00
Daniël de Kok
69d418aeac vowpalwabbit: mark broken on aarch64. 2018-09-04 07:43:53 +02:00
Michiel Leenaars
9692b7997c pythonPackages.authres: fix broken homepage 2018-09-03 23:52:27 +02:00
Daniël de Kok
e33be2ab56 Keras: fix build by updating expected dependencies. (#45992) 
Keras expects keras_preprocessing 1.0.2 and 1.0.4. 1.0.3 and 1.0.5
are respectively in nixpkgs.

ZHF #45960
 2018-09-03 21:59:36 +02:00
Daniël de Kok
fe7e89ba3b vowpal-wabbit: fix Darwin build. 
- Follow the same logic for finding boost-python as for Linux.
- Set DYLD_LIBRARY_PATH so that ctypes find_library can find
  boost-python.
- Do not use '-mt' suffix when linking against boost-serialization
  and boost-program_options on Darwin.
 2018-09-03 21:48:13 +02:00
Matthieu Coudron
97816bed33 pythonPackages.alot: install zsh completion 2018-09-04 02:22:58 +09:00
Daniël de Kok
875bb6bcb9 vowpalwabbit: fix build against boost-python. 
Patch setup.py to look for libboost_python{Major}{Minor}.
 2018-09-03 15:47:04 +02:00
Jörg Thalheim
d1c6c32230
Merge pull request #45964 from Mic92/irc 
python.pkgs.irc: 14.2.2 -> 16.4
 2018-09-03 01:36:07 +01:00
Jörg Thalheim
35c9408ca4 python.pkgs.irc: 14.2.2 -> 16.4 2018-09-03 01:25:03 +01:00
Jörg Thalheim
9bc1b13983 python.pkgs.jaraco_logging: 1.5 -> 1.5.2 2018-09-03 01:25:03 +01:00
Jörg Thalheim
7cd2bf48f7 python.pkgs.jaraco_text: 1.7 -> 1.10.1 2018-09-03 01:25:02 +01:00
Jörg Thalheim
c4bf056c08 python.pkgs.jaraco.collections: 1.3.2 -> 1.5.3 2018-09-03 01:25:02 +01:00
Jörg Thalheim
6b1b6c84bf python.pkgs.jaraco.itertools: 1.7.1 -> 2.4 2018-09-03 01:25:02 +01:00
Jörg Thalheim
b3e9520a0c python.pkgs.jaraco.classes: 1.4 -> 1.5 2018-09-03 01:25:01 +01:00
Jörg Thalheim
97b73d6a58 python.pkgs.jaraco.stream: 1.1.1 -> 1.2 2018-09-03 01:25:01 +01:00
Jörg Thalheim
8e15622cf3 python.pkgs.inflect: 0.2.5 -> 1.0.0 2018-09-03 01:25:01 +01:00
Ryan Mulligan
7b54a50e97
Merge pull request #45730 from Helkafen/snakemake 
snakemake: init at 5.2.2
 2018-09-02 07:54:13 -07:00
Tobias Happ
e6a3ad775f pythonPackages.dependency-injector: init at 3.13.1 (#45871) 2018-09-01 17:29:47 +02:00
Vladimír Čunát
355f19653c
pythonPackages.more-itertools: avoid doCheck on i686 
I expect noone will want to spend time really fixing these,
but it blocks wine from building...
 2018-09-01 15:08:53 +02:00
Frederik Rietdijk
4134048b6f Merge master into staging-next 2018-09-01 10:41:58 +02:00
Frederik Rietdijk
43f6ceabb8 pythonPackages.pandas: fix build 2018-09-01 10:41:37 +02:00
Robert Schütz
5a9270fe57 python.pkgs.h5py: disable tests 2018-09-01 10:41:37 +02:00
Robert Schütz
de151625f2 python.pkgs.natsort: no pyflakes and pep8 checks 2018-09-01 10:41:37 +02:00
Robert Schütz
6c9f7e2742 python.pkgs.cairocffi: remove superfluous patch 2018-09-01 10:41:37 +02:00