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386 commits

Author SHA1 Message Date
R. RyanTM
ac1c96ecec
colmap: 3.6 -> 3.7 
* colmap: 3.6 -> 3.7 (#159198)

* colmap: license is BSD-3-Clause

Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
 2022-02-18 00:29:14 +01:00
Daniel Wheeler
4befe7a89f
snakemake: 6.10.0 -> 6.15.5 (#159026) 
Fetch from GitHub rather than PyPI so tests are included.
 2022-02-17 18:06:23 -05:00
Zhong Jianxin
e8f3914985 treewide: Replace transfig with fig2dev 
Reasons:

- transfig never get upstream update since it was added to nixpkgs 2006,
  according to [fig2dev Debian changelog][1], upstream maintainership
  was taken over at 2016, and renamed to fig2dev.

- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
  transfig.

- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.

- One less package to maintain.

[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
 2022-02-15 10:13:56 +08:00
R. Ryantm
2220d35562 bada-bib: 0.3.0 -> 0.4.1 2022-02-12 22:22:46 -08:00
R. Ryantm
24b505484b cytoscape: 3.9.0 -> 3.9.1 2022-02-12 21:13:11 -08:00
R. Ryantm
1631ffae8d cwltool: 3.1.20220204090313 -> 3.1.20220210171524 2022-02-11 12:44:06 -05:00
R. RyanTM
1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 (#158272) 2022-02-05 15:14:21 -05:00
Sandro
63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts 2022-02-04 18:26:20 +01:00
R. Ryantm
af3af2df32 cwltool: 3.1.20220124184855 -> 3.1.20220202173120 2022-02-03 20:06:12 -05:00
markuskowa
65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib 
bada-bib: init at 0.3.0
 2022-02-01 22:26:26 +01:00
Robert Schütz
a13fe11c59 sasview: 4.2.0 -> 5.0.4 2022-01-30 20:47:10 +00:00
Andrew Fontaine
3c0680b783
fahviewer: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:47:24 -05:00
Andrew Fontaine
ba785adb28
fahcontrol: fix variable substitution for shortcut 
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
 2022-01-28 16:46:52 -05:00
Yipeng Sun
54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD (#157069) 2022-01-27 19:37:36 -05:00
Sandro
27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker 2022-01-27 14:06:36 +01:00
ajs124
3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip 
tulip: 5.2.1 -> 5.6.1
 2022-01-26 23:33:44 +01:00
Felix Buehler
ed7bf9452c treewide: remove *.upstream files from updateWalker 2022-01-26 21:46:07 +01:00
R. Ryantm
6b3bf39220 cwltool: 3.1.20220119140128 -> 3.1.20220124184855 2022-01-25 21:56:09 -05:00
R. Ryantm
f888e66ad4 cwltool: 3.1.20211107152837 -> 3.1.20220119140128 2022-01-21 09:09:34 -05:00
ajs124
479ca09609 tulip: 5.2.1 -> 5.6.1 2022-01-21 03:45:21 +01:00
Robert Schütz
d5cceedbd1 python,pythonPackages: make aliases 
Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
 2022-01-16 18:39:59 +00:00
Bobby Rong
cb3da55ede
Merge pull request #154988 from veprbl/pr/broken_gplates 
gplates: mark as broken on darwin
 2022-01-15 13:24:14 +08:00
Bobby Rong
a6ed245599
Merge pull request #154989 from veprbl/pr/broken_graphia 
graphia: mark as broken on darwin
 2022-01-15 13:23:31 +08:00
Fabian Affolter
49574fc9d5
Merge pull request #154934 from fabaff/fix-toil 
toil: 5.4.0 -> 5.6.0
 2022-01-14 21:16:45 +01:00
Dmitry Kalinkin
2b9f8eb0a2
graphia: mark as broken on darwin 2022-01-14 03:38:54 -05:00
Dmitry Kalinkin
69d78f174a
gplates: mark as broken on darwin 2022-01-14 03:33:15 -05:00
Shamrock Lee
cc5ffb3de4 root: Explicit specify -Dtmva=ON 2022-01-14 14:19:33 +08:00
Shamrock Lee
336cc50b1f root: add openblas and lapack into buildInputs for TMVA 2022-01-14 14:15:22 +08:00
Fabian Affolter
32003c3051 toil: 5.4.0 -> 5.6.0 2022-01-13 21:37:08 +01:00
Fabian Affolter
1a549598b4 cwltool: 3.1.20211104071347 -> 3.1.20211107152837 2022-01-12 18:00:43 +01:00
Fabian Affolter
b9c6bff4f0 nextinspace: 1.0.6 -> 2.0.3 2022-01-09 01:17:23 +01:00
Ben Siraphob
39a0a70d29
treewide: fix homepages with permanent redirect to https 2021-12-29 22:06:47 +07:00
Rasmus Thomsen
83e5da9238
bada-bib: init at 0.3.0 2021-12-28 12:40:39 +01:00
Dmitry Kalinkin
d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex 2021-12-26 00:07:49 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc 
boinc: 7.14.2 -> 7.18.1
 2021-12-18 21:32:22 +08:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink 
rink: 0.6.1 -> 0.6.2
 2021-12-13 14:40:57 +02:00
R. Ryantm
3112fe2ace openmvg: 1.6 -> 2.0 2021-12-07 20:17:43 +00:00
R. Ryantm
5517f74759 rink: 0.6.1 -> 0.6.2 2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output 2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1 2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer 2021-12-06 23:56:05 +01:00
Michael Raskin
65b2df8b45 golly: 3.3 -> 4.1 2021-12-06 16:27:09 +01:00
Bernardo Meurer
51694b0af4 root5: binutils 2.37 fix 
Co-authored-by: TredwellGit <tredwell@tutanota.com>
 2021-11-28 08:49:32 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool 
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
 2021-11-11 23:41:46 -05:00
Felix Buehler
b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Fabian Affolter
18b531b514 cwltool: 3.1.20210628163208 -> 3.1.20211104071347 2021-11-06 13:01:16 +01:00
R. Ryantm
5ba5ff1a84 cytoscape: 3.8.2 -> 3.9.0 2021-10-29 09:08:26 +00:00
Dmitry Kalinkin
49d19b7945
snakemake: 6.7.0 -> 6.10.0 2021-10-24 17:49:14 -04:00
Vladimir Korolev
72d4a1f13d openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers 2021-10-02 12:39:57 +03:00
Robert Schütz
98c8fc6fd0 gplates: 2.2.0 -> 2.3.0 2021-09-26 23:11:29 -07:00