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python311Packages.phik: refactor, disable failing tests

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This commit is contained in:
Fabian Affolter 2023-11-25 12:17:31 +01:00
parent 6011769ece
commit fc1c549b56
1 changed files with 45 additions and 25 deletions
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70
pkgs/development/python-modules/phik/default.nix
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@ -2,27 +2,29 @@
, buildPythonPackage
, cmake
, fetchFromGitHub
, isPy3k
, pytestCheckHook
, nbconvert
, joblib
, jupyter
, jupyter-client
, numpy
, scipy
, pandas
, matplotlib
, nbconvert
, ninja
, numba
, numpy
, pandas
, pybind11
, pytestCheckHook
, pythonOlder
, scikit-build
, scipy
, setuptools
}:
buildPythonPackage rec {
pname = "phik";
version = "0.12.3";
disabled = !isPy3k;
format = "pyproject";
pyproject = true;
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "KaveIO";
@ -31,11 +33,11 @@ buildPythonPackage rec {
hash = "sha256-9o3EDhgmne2J1QfzjjNQc1mUcyCzoVrCnWXqjWkiZU0=";
};
nativeCheckInputs = [
pytestCheckHook
nbconvert
jupyter
jupyter-client
nativeBuildInputs = [
cmake
ninja
scikit-build
setuptools
];
propagatedBuildInputs = [
@ -48,16 +50,19 @@ buildPythonPackage rec {
pybind11
];
# uses setuptools to drive build process
dontUseCmakeConfigure = true;
nativeBuildInputs = [
cmake
ninja
scikit-build
nativeCheckInputs = [
pytestCheckHook
nbconvert
jupyter
jupyter-client
];
pythonImportsCheck = [ "phik" ];
# Uses setuptools to drive build process
dontUseCmakeConfigure = true;
pythonImportsCheck = [
"phik"
];
postInstall = ''
rm -r $out/bin
@ -68,12 +73,27 @@ buildPythonPackage rec {
rm -r phik
'';
disabledTests = [
# TypeError: 'numpy.float64' object cannot be interpreted as an integer
# https://github.com/KaveIO/PhiK/issues/73
"test_significance_matrix_hybrid"
"test_significance_matrix_mc"
];
disabledTestPaths = [
# Don't test integrations
"tests/phik_python/integration/"
];
meta = with lib; {
description = "Phi_K correlation analyzer library";
longDescription = "Phi_K is a new and practical correlation coefficient based on several refinements to Pearson’s hypothesis test of independence of two variables.";
homepage = "https://phik.readthedocs.io/en/latest/";
changelog = "https://github.com/KaveIO/PhiK/blob/${src.rev}/CHANGES.rst";
maintainers = with maintainers; [ melsigl ];
longDescription = ''
Phi_K is a new and practical correlation coefficient based on several refinements to
Pearson’s hypothesis test of independence of two variables.
'';
homepage = "https://phik.readthedocs.io/";
changelog = "https://github.com/KaveIO/PhiK/blob/${version}/CHANGES.rst";
license = licenses.asl20;
maintainers = with maintainers; [ melsigl ];
};
}