r-modules: disable broken packages to avoid Hydra evaluation errors
This commit is contained in:
Peter Simons
parent
c9743be445
commit
d4c810cccd
1 changed files with 273 additions and 5 deletions
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@ -649,97 +649,191 @@ let
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# Packages which cannot be installed due to lack of dependencies or other reasons.
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brokenPackages = [
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"abd" # requires nlopt
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"ACNE" # requires aroma_affymetrix
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"Actigraphy" # SDMTools.so: undefined symbol: X
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"adabag" # requires nlopt
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"adaptsmoFMRI" # requires spatstat
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"ads" # requires spatstat
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"AER" # REQUIRES NLOPT
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"afex" # requires nlopt
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"agRee" # requires nlopt
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"agridat" # requires pcaMethods
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"aLFQ" # requires protiq
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"alr3" # requires nlopt
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"alr4" # requires nlopt
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"anacor" # requires nlopt
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"AntWeb" # requires leafletR
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"aods3" # requires nlopt
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"aoristic" # requires spatstat
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"apmsWAPP" # requires genefilter, Biobase, multtest, edgeR, DESeq, and aroma.light
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"apt" # requires nlopt
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"ArfimaMLM" # Requires Nlopt
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"arm" # requires nlopt
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"aroma_affymetrix" # requires aroma_core
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"aroma_cn" # requires PSCBS
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"aroma_core" # requires PSCBS
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"ArrayBin" # requires SAGx
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"ARTool" # Requires Nlopt
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"babel" # requires edgeR
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"BACA" # requires RDAVIDWebService
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"backShift" # requires pcalg to build
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"bartMachine" # requires nlopt
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"bayesDem" # requires nlopt
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"bayesLife" # requires nlopt
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"bayesPop" # requires nlopt
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"Bayesthresh" # Requires Nlopt
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"BBRecapture" # Requires Nlopt
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"BCA" # REQUIRES NLOPT
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"BcDiag" # requires fabia
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"bdvis" # requres taxize
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"beadarrayFilter" # requires beadarray
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"beadarrayMSV" # requires Biobase, geneplotter, andlimma
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"bgmm" # requires nlopt
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"BIFIEsurvey" # requires DiagrammeR to build
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"bigGP" # requires MPI running. HELP WANTED!
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"bigpca" # requires NCmisc
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"BiodiversityR" # Requires Nlopt
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"Biograph" # requires mvna
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"biotools" # requires rpanel
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"BiSEp" # requires GOSemSim, GO.db, and org.Hs.eg.db
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"BLCOP" # depends on broken fPortfolio
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"blmeco" # requires nlopt
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"blme" # requires nlopt
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"bmd" # requires nlopt
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"bmem" # requires DiagrammeR to build
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"bmrm" # requires clpAPI
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"bootnet" # requires IsingFit
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"boss" # requires nlopt
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"BradleyTerry2" # Requires Nlopt
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"branchLars" # requires Rgraphviz
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"BRugs" # requires OpenBUGS
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"CADFtest" # Requires Nlopt
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"cAIC4" # requires nlopt
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"calmate" # requires aroma_core
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"candisc" # requires nlopt
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"carcass" # requires nlopt
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"caretEnsemble" # requires nlopt
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"caret" # requires nlopt
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"CARrampsOcl" # depends on OpenCL
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"car" # requires nlopt
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"CCpop" # Requires Nlopt
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"ChainLadder" # Requires Nlopt
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"CHAT" # requires DNAcopy
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"ChemoSpec" # depends on broken speaq
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"classGraph" # requires graph, and Rgraphviz
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"climwin" # requires nlopt
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"CLME" # REQUIRES NLOPT
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"clpAPI" # requires clp
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"clusterPower" # requires nlopt
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"compendiumdb" # requires Biobase
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"conformal" # requires nlopt
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"corHMM" # requires nlopt
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"CORM" # requires limma
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"CosmoPhotoz" # Requires Nlopt
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"cp4p" # build is broken
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"cplexAPI" # requires CPLEX
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"crmn" # requires pcaMethods, and Biobase
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"Crossover" # fails self-test
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"CrypticIBDcheck" # requires rJPSGCS
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"cudaBayesreg" # requres Rmath
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"curl" # build is broken
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"curvHDR" # requires flowCore
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"D2C" # requires gRbase
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"DAAGbio" # requires limma
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"daff" # requires V8 to build
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"dagbag" # requires Rlapack
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"DAMisc" # Requires Nlopt
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"DBKGrad" # requires SDD
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"dbmss" # requires spatstat
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"DCGL" # requires limma
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"dcGOR" # requires dnet
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"DeducerExtras" # Requires Nlopt
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"DeducerPlugInExample" # Requires Nlopt
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"DeducerPlugInScaling" # Requires Nlopt
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"Deducer" # Requires Nlopt
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"DeducerSpatial" # Requires Nlopt
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"DeducerSurvival" # Requires Nlopt
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"DeducerText" # Requires Nlopt
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"demi" # requires affy, affxparser, and oligo
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"DepthProc" # requires samr
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"DiagrammeR" # requires V8 to build
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"DiagTest3Grp" # Requires Nlopt
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"DiffCorr" # misses undeclared dependencies 'pcaMethods', 'multtest'
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"difR" # requires nlopt
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"Digiroo2" # requires spatstat
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"discSurv" # requires nlopt
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"DistatisR" # Requires Nlopt
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"diveRsity" # requires DiagrammeR to build
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"dixon" # requires spatstat
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"dnet" # requires supraHex, graph, Rgraphviz, and Biobase
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"doMPI" # requires MPI running. HELP WANTED!
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"dpa" # requires DiagrammeR to build
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"dpcR" # requires spatstat
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"drc" # requires nlopt
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"drfit" # requires nlopt
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"drsmooth" # requires nlopt
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"DSpat" # requires spatstat
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"dynlm" # requires nlopt
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"easyanova" # requires nlopt
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"ecespa" # requires spatstat
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"ecoengine" # requires leafletR
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"ecospat" # requires spatstat
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"edgeRun" # requires edgeR
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"eeptools" # requires nlopt
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"EffectLiteR" # Requires Nlopt
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"effects" # requires nlopt
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"EMA" # requires siggenes, affy, multtest, gcrma, biomaRt, and AnnotationDbi
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"empiricalFDR_DESeq2" # requires DESeq2, and GenomicRanges
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"EnQuireR" # Requires Nlopt
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"episplineDensity" # requires nlopt
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"epoc" # requires graph, and Rgraphviz
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"epr" # requires nlopt
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"erer" # requires nlopt
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"erpR" # requires rpanel
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"ETAS" # requires spatstat
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"eulerian" # requires graph
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"evobiR" # requres taxiz
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"evora" # requires qvalue
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"ExomeDepth" # requires GenomicRanges, and Rsamtools
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"extRemes" # requires nlopt
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"ez" # requires nlopt
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"FactoMineR" # Requires Nlopt
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"Factoshiny" # Requires Nlopt
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"FAMT" # requires impute
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"faoutlier" # requires DiagrammeR to build
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"fastR" # requires nlopt
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"fdrDiscreteNull" # requires edgeR
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"FDRreg" # Requires Nlopt
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"FHtest" # requires interval
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"flexCWM" # depends on broken mixture
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"fPortfolio" # requires rneos
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"freqweights" # requires nlopt
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"fscaret" # requires nlopt
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"FunctionalNetworks" # requires breastCancerVDX, and Biobase
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"fxregime" # requires nlopt
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"gamclass" # requires nlopt
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"gamlss_demo" # requires rpanel
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"gamm4" # requires nlopt
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"gcmr" # requires nlopt
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"GDAtools" # Requires Nlopt
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"GeneticTools" # requires snpStats
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"genridge" # requires nlopt
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"geojsonio" # requires V8 to build
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"GExMap" # requires Biobase and multtest
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"gimme" # requires DiagrammeR to build
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"gitter" # requires EBImage
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"glmgraph" # test suite says: "undefined symbol: dgemv_"
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"gmatrix" # depends on proprietary cudatoolkit
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"gMCP" # fails self-test
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"GOGANPA" # requires WGCNA
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"gplm" # requires nlopt
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"gputools" # depends on proprietary cudatoolkit
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"gRain" # requires gRbase
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"granova" # requires nlopt
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"gRapHD" # requires graph
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"graphicalVAR" # requires DiagrammeR to build
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"GraphPCA" # Requires Nlopt
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"gRbase" # requires RBGL, and graph
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"gRc" # requires gRbase
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"gridDebug" # requires gridGraphviz
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@ -748,51 +842,101 @@ let
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"gRim" # requires gRbase
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"GSAgm" # requires edgeR
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"GUIDE" # requires rpanel
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"GWAF" # REQUIRES NLOPT
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"h2o" # tries to download some h2o.jar during its build
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"h5" # depends on missing h5 system library
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"hasseDiagram" # requires Rgraphviz
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"hbsae" # requires nlopt
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"hddplot" # requires multtest
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"heplots" # requires nlopt
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"HH" # REQUIRES NLOPT
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"HierO" # requires rneos
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"HiPLARM" # requires MAGMA or PLASMA
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"HistDAWass" # Requires Nlopt
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"HLMdiag" # Requires Nlopt
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"hpoPlot" # requires Rgraphviz
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"hsdar" # fails to build
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"HTSCluster" # requires edgeR
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"hysteresis" # requires nlopt
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"IATscores" # requires DiagrammeR to build
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"ibd" # requires nlopt
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"iccbeta" # requires nlopt
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"iFes" # depends on proprietary cudatoolkit
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"imputeLCMD" # requires pcaMethods, and impute
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"imputeR" # requires nlopt
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"in2extRemes" # requires nlopt
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"incReg" # requires nlopt
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"inferference" # requires nlopt
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"influence_ME" # requires nlopt
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"intamapInteractive" # requires spatstat
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"interval" # requires Icens
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"ionflows" # requires Biostrings
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"iRefR" # requires graph, and RBGL
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"IsingFit" # requires DiagrammeR to build
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"IsoGene" # requires Biobase, and affy
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"isva" # requires qvalue
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"ivpack" # requires nlopt
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"JAGUAR" # REQUIRES NLOPT
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"jomo" # linking errors
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"js" # requires broken V8
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"KANT" # requires affy, and Biobase
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"ktspair" # requires Biobase
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"latticeDensity" # requires spatstat
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"lawn" # requires DiagrammeR to build
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"lawn" # requires V8 to build
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"leapp" # requires sva
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"learnstats" # requires nlopt
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"lefse" # SDMTools.so: undefined symbol: X
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"lessR" # requires nlopt
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"lfe" # fails to compile
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"lgcp" # requires rpanel
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"LinRegInteractive" # requires Rpanel
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"lme4" # requires nlopt
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"LMERConvenienceFunctions" # Requires Nlopt
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"lmerTest" # requires nlopt
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"lmSupport" # requires nlopt
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"LogisticDx" # requires gRbase
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"longpower" # requires nlopt
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"LOST" # requires pcaMethods
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"ltsk" # requires Rlapack and Rblas
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"magma" # requires MAGMA
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"MAMA" # requires metaMA
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"marked" # requires nlopt
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"MaxPro" # Requires Nlopt
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"mbest" # requires nlopt
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"meboot" # requires nlopt
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"MEET" # requires pcaMethods, and seqLogo
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"MEMSS" # REQUIRES NLOPT
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"metabolomics" # depends on broken crmn
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"MetaDE" # requires impute, and Biobase
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"metagear" # build is broken
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"MetaLandSim" # requires Biobase
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"metaMA" # requires limma
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"metaMix" # requires MPI running. HELP WANTED!
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"metaplus" # requires nlopt
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"metaSEM" # requires OpenMx
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"Metatron" # Requires Nlopt
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"mGSZ" # requires Biobase, and limma
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"miceadds" # requires DiagrammeR to build
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"micEconAids" # requires nlopt
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"micEconCES" # requires nlopt
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"micEconSNQP" # requires nlopt
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"MigClim" # SDMTools.So: Undefined Symbol: X
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"migui" # requires nlopt
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"minimist" # requires broken V8
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"mi" # requires nlopt
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"miRtest" # requires globaltest, GlobalAncova, and limma
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"missMDA" # requires nlopt
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"mixAK" # requires nlopt
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"MixGHD" # requires mixture to build
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"mixlm" # requires nlopt
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"MixMAP" # Requires Nlopt
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"mixture" # mixture.so: undefined symbol: dtrmm_
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"mlmRev" # requires nlopt
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"mlVAR" # requires DiagrammeR to build
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"MM2S" # BUILD IS BROKEN
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"moduleColor" # requires impute
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"mongolite" # doesn't find OpenSSL
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"mosaic" # requires nlopt
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"msarc" # requires AnnotationDbi
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"MSeasy" # requires mzR, and xcms
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"MSeasyTkGUI" # requires MSeasyTkGUI
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@ -800,106 +944,209 @@ let
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"msSurv" # requires graph
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"muir" # requires DiagrammeR to build
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"multiDimBio" # requires pcaMethods
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"MultiRR" # Requires Nlopt
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"muma" # requires nlopt
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"mutossGUI" # requires mutoss
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"mutoss" # requires multtest
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"mvinfluence" # requires nlopt
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"MXM" # depends on broken gRbase
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"NBPSeq" # requires qvalue
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"nCal" # requires nlopt
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"NCmisc" # requires BiocInstaller
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"netClass" # requires samr
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"nettools" # requires WGCNA
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"netweavers" # requires BiocGenerics, Biobase, and limma
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"NHPoisson" # Requires Nlopt
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"nloptr" # requires nlopt
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"NLPutils" # requires qdap
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"nonrandom" # requires nlopt
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"NORRRM" # can't load SDMTools properly
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"npIntFactRep" # requires nlopt
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"NSA" # requires aroma_core
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"OpenCL" # FIXME: requires CL/opencl.h
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"OpenMx" # Build Is Broken
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"optBiomarker" # requires rpanel
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"ora" # requires ROracle
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"ordBTL" # requires nlopt
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"orQA" # requires genefilter
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"OUwie" # Requires Nlopt
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"PairViz" # requires graph
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"pamm" # requires nlopt
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"PANDA" # requires GO.db
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"pander" # build is broken
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"panelAR" # requires nlopt
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"papeR" # requires nlopt
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"parboost" # requires nlopt
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"ParDNAcopy" # requires DNAcopy
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"parma" # requires nlopt
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"pathClass" # requires affy, and Biobase
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"PatternClass" # SDMTools.So: Undefined Symbol: X
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"pbdBASE" # requires pbdMPI
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"pbdDEMO" # requires pbdMPI
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"pbdDMAT" # requires pbdMPI
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"pbdSLAP" # requires pbdMPI
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"PBImisc" # Requires Nlopt
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"pbkrtest" # requires nlopt
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"PBSddesolve" # fails its test suite for unclear reasons
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"PBSmapping" # fails its test suite for unclear reasons
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"pcaL1" # requires clp
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"pcalg" # requires graph, and RBGL
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"PCGSE" # requires safe
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"PCS" # requires multtest
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"pedigreemm" # requires nlopt
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"pedometrics" # requires nlopt
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"PepPrep" # requires biomaRt
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"pequod" # requires nlopt
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"PerfMeas" # requires limma, graph, and RBGL
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"permGPU" # requires Biobase
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"phia" # requires nlopt
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"PhViD" # requires LBE
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"phylocurve" # requires nlopt
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"phyloTop" # requires nlopt
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"pi0" # requires qvalue
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"plmDE" # requires limma
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"plsRbeta" # requires nlopt
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"plsRcox" # requires survcomp
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"plsRglm" # requires nlopt
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"PMA" # requires impute
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"pmcgd" # depends on broken mixture
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"pmclust" # requires MPI running. HELP WANTED!
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"polyCub" # requires spatstat
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"polytomous" # requires nlopt
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"pomp" # requires nlopt
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"ppiPre" # requires AnnotationDbi, GOSemSim, GO.db
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"predictmeans" # requires nlopt
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"pRF" # requires multtest
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"prLogistic" # requires nlopt
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"propOverlap" # requires Biobase
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"protiq" # requires graph, and RBGL
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"PSAboot" # Requires Nlopt
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"PSCBS" # requires DNAcopy
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"pubmed_mineR" # requires SSOAP
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"PubMedWordcloud" # requires GOsummaries
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"qdap" # requires gender
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"qgraph" # requires DiagrammeR to build
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"qtbase" # build is broken
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"qtlnet" # requires pcalg
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"qtpaint" # can't find QtCore libraries
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"qtutils" # requires qtbase
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"QuACN" # requires graph, RBGL
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"quanteda" # fails to build
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"quantification" # requires nlopt
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"QuasiSeq" # requires edgeR
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"R2STATS" # REQUIRES NLOPT
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"RADami" # requires Biostrings
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"radiant" # requires nlopt
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"raincpc" # SDMTools.so: undefined symbol: X
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"rainfreq" # SDMTools.so: undefined symbol: X
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"RAM" # requires Heatplus
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"RapidPolygonLookup" # depends on broken PBSmapping
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"RAPIDR" # requires Biostrings, Rsamtools, and GenomicRanges
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"rasclass" # requires nlopt
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"RbioRXN" # requires fmcsR, and KEGGREST
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"RcmdrMisc" # Requires Nlopt
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"RcmdrPlugin_BCA" # Requires Nlopt
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"RcmdrPlugin_coin" # requires nlopt
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"RcmdrPlugin_depthTools" # requires nlopt
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"RcmdrPlugin_DoE" # Requires Nlopt
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"RcmdrPlugin_doex" # requires nlopt
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"RcmdrPlugin_EACSPIR" # Requires Nlopt
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"RcmdrPlugin_EBM" # Requires Nlopt
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"RcmdrPlugin_EcoVirtual" # Requires Nlopt
|
||||
"RcmdrPlugin_epack" # requires nlopt
|
||||
"RcmdrPlugin_EZR" # Requires Nlopt
|
||||
"RcmdrPlugin_FactoMineR" # Requires Nlopt
|
||||
"RcmdrPlugin_HH" # Requires Nlopt
|
||||
"RcmdrPlugin_IPSUR" # Requires Nlopt
|
||||
"RcmdrPlugin_KMggplot2" # Requires Nlopt
|
||||
"RcmdrPlugin_lfstat" # requires nlopt
|
||||
"RcmdrPlugin_MA" # Requires Nlopt
|
||||
"RcmdrPlugin_mosaic" # requires nlopt
|
||||
"RcmdrPlugin_MPAStats" # Requires Nlopt
|
||||
"RcmdrPlugin_NMBU" # Requires Nlopt
|
||||
"RcmdrPlugin_orloca" # requires nlopt
|
||||
"RcmdrPlugin_plotByGroup" # requires nlopt
|
||||
"RcmdrPlugin_pointG" # requires nlopt
|
||||
"RcmdrPlugin_qual" # requires nlopt
|
||||
"RcmdrPlugin_RMTCJags" # Requires Nlopt
|
||||
"RcmdrPlugin_ROC" # Requires Nlopt
|
||||
"RcmdrPlugin_sampling" # requires nlopt
|
||||
"RcmdrPlugin_SCDA" # Requires Nlopt
|
||||
"RcmdrPlugin_seeg" # requires seeg
|
||||
"RcmdrPlugin_SLC" # Requires Nlopt
|
||||
"RcmdrPlugin_SM" # Requires Nlopt
|
||||
"RcmdrPlugin_sos" # requires nlopt
|
||||
"RcmdrPlugin_StatisticalURV" # Requires Nlopt
|
||||
"RcmdrPlugin_steepness" # requires nlopt
|
||||
"RcmdrPlugin_survival" # requires nlopt
|
||||
"RcmdrPlugin_TeachingDemos" # Requires Nlopt
|
||||
"RcmdrPlugin_temis" # requires nlopt
|
||||
"RcmdrPlugin_UCA" # Requires Nlopt
|
||||
"Rcmdr" # Requires Nlopt
|
||||
"Rcplex" # requires cplexAPI
|
||||
"RcppAPT" # configure script depends on /bin/sh
|
||||
"RcppOctave" # Build Is Broken
|
||||
"RcppRedis" # requires Hiredis
|
||||
"rdd" # requires nlopt
|
||||
"rDEA" # no such file or directory
|
||||
"RDieHarder" # requires libdieharder
|
||||
"reader" # requires NCmisc
|
||||
"REBayes" # requires Rmosek
|
||||
"referenceIntervals" # requires nlopt
|
||||
"RefFreeEWAS" # requires isva
|
||||
"refund" # requires nlopt
|
||||
"REST" # REQUIRES NLOPT
|
||||
"retistruct" # depends on broken RImageJROI
|
||||
"rgbif" # requires V8 to build
|
||||
"rgp" # fails self-test
|
||||
"rgpui" # depends on broken rgp
|
||||
"RImageJROI" # requires spatstat
|
||||
"rjade" # requires V8 to build
|
||||
"rJPSGCS" # requires chopsticks
|
||||
"rLindo" # requires LINDO API
|
||||
"rmgarch" # requires nlopt
|
||||
"rminer" # requires nlopt
|
||||
"Rmosek" # requires mosek
|
||||
"RnavGraph" # requires graph, and RBGL
|
||||
"rneos" # requires XMLRPC
|
||||
"RNeXML" # requres taxize
|
||||
"RobLoxBioC" # requires Biobase
|
||||
"RobLox" # requires Biobase
|
||||
"robustlmm" # requires nlopt
|
||||
"rockchalk" # requires nlopt
|
||||
"RockFab" # requires EBImage
|
||||
"ROI_plugin_symphony" # depends on broken Rsymphony
|
||||
"ROracle" # requires OCI
|
||||
"rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED!
|
||||
"rpubchem" # requires nlopt
|
||||
"RQuantLib" # requires QuantLib
|
||||
"rr" # requires nlopt
|
||||
"RSAP" # requires SAPNWRFCSDK
|
||||
"rscala" # build is broken
|
||||
"RSDA" # REQUIRES NLOPT
|
||||
"RSeed" # requires RBGL, and graph
|
||||
"rsig" # requires survcomp
|
||||
"RSNPset" # requires qvalue
|
||||
"Rsymphony" # FIXME: requires SYMPHONY
|
||||
"rugarch" # requires nlopt
|
||||
"RVAideMemoire" # Requires Nlopt
|
||||
"RVFam" # Requires Nlopt
|
||||
"RVideoPoker" # requires Rpanel
|
||||
"ryouready" # requires nlopt
|
||||
"rysgran" # requires soiltexture
|
||||
"sampleSelection" # requires nlopt
|
||||
"samr" # requires impute
|
||||
"sdcMicroGUI" # requires nlopt
|
||||
"sdcMicro" # requires nlopt
|
||||
"SDD" # requires rpanel
|
||||
"seeg" # requires spatstat
|
||||
"selectspm" # depends on broken ecespa
|
||||
"semdiag" # requires DiagrammeR to build
|
||||
"semGOF" # requires DiagrammeR to build
|
||||
"semiArtificial" # requires RSNNS
|
||||
"semPlot" # requires DiagrammeR to build
|
||||
"sem" # requires DiagrammeR to build
|
||||
"SensoMineR" # Requires Nlopt
|
||||
"SeqFeatR" # requires Biostrings, qvalue, and widgetTools
|
||||
"SeqGrapheR" # depends on Biostrings
|
||||
"sequenza" # requires copynumber
|
||||
|
|
@ -909,6 +1156,8 @@ let
|
|||
"SimRAD" # requires Biostrings, and ShortRead
|
||||
"SimSeq" # requires edgeR
|
||||
"siplab" # requires spatstat
|
||||
"sirt" # requires DiagrammeR to build
|
||||
"sjPlot" # requires nlopt
|
||||
"smart" # requires PMA
|
||||
"snpEnrichment" # requires snpStats
|
||||
"snplist" # requires biomaRt
|
||||
|
|
@ -916,41 +1165,60 @@ let
|
|||
"SNPtools" # requires IRanges, GenomicRanges, Biostrings, and Rsamtools
|
||||
"SOD" # depends on proprietary cudatoolkit
|
||||
"soilphysics" # requires rpanel
|
||||
"spacom" # requires nlopt
|
||||
"sparr" # requires spatstat
|
||||
"spatialsegregation" # requires spatstat
|
||||
"SpatialVx" # requires spatstat
|
||||
"speaq" # requires MassSpecWavelet
|
||||
"specificity" # requires nlopt
|
||||
"spocc" # requires leafletR
|
||||
"SQDA" # requires limma
|
||||
"ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue'
|
||||
"ssmrob" # requires nlopt
|
||||
"stagePop" # depends on broken PBSddesolve
|
||||
"statar" # depends on broken lfe
|
||||
"Statomica" # requires Biobase, multtest
|
||||
"stcm" # requires nlopt
|
||||
"stepp" # requires nlopt
|
||||
"stpp" # requires spatstat
|
||||
"structSSI" # requires multtest
|
||||
"strum" # requires Rgraphviz
|
||||
"superbiclust" # requires fabia
|
||||
"Surrogate" # Requires Nlopt
|
||||
"surveillance" # requires polyCub
|
||||
"survJamda" # depends on missing survcomp
|
||||
"swamp" # requires impute
|
||||
"switchr" # build is broken
|
||||
"switchrGist" # requires switchr
|
||||
"sybilSBML" # requires libSBML
|
||||
"systemfit" # requires nlopt
|
||||
"taxize" # requres bold
|
||||
"TcGSA" # requires multtest
|
||||
"TDMR" # REQUIRES NLOPT
|
||||
"tigerstats" # requires nlopt
|
||||
"timeSeq" # depends on missing edgeR
|
||||
"topologyGSA" # requires gRbase
|
||||
"TR8" # requres taxize
|
||||
"TriMatch" # Requires Nlopt
|
||||
"trip" # requires spatstat
|
||||
"TROM" # misses undeclared dependencies topGO', 'AnnotationDbi', 'GO.db'
|
||||
"ttScreening" # requires sva, and limma
|
||||
"userfriendlyscience" # requires nlopt
|
||||
"V8" # compilation error
|
||||
"VIMGUI" # REQUIRES NLOPT
|
||||
"VIM" # REQUIRES NLOPT
|
||||
"vmsbase" # depends on broken PBSmapping
|
||||
"vows" # requires rpanel
|
||||
"wfe" # requires nlopt
|
||||
"WGCNA" # requires impute
|
||||
"wgsea" # requires snpStats
|
||||
"WideLM" # depends on proprietary cudatoolkit
|
||||
"x_ent" # requires opencpu
|
||||
"xergm" # requires nlopt
|
||||
"xml2" # build is broken
|
||||
"ZeligMultilevel" # Requires Nlopt
|
||||
"zetadiv" # requires nlopt
|
||||
"zoib" # tarball is invalid on server
|
||||
"timeSeq" # depends on missing edgeR
|
||||
"survJamda" # depends on missing survcomp
|
||||
"ssizeRNA" # depends on missing 'Biobase', 'edgeR', 'limma', 'qvalue'
|
||||
"h5" # depends on missing h5 system library
|
||||
];
|
||||
|
||||
otherOverrides = old: new: {
|
||||
|
|
|
|||
Loading…
Reference in a new issue