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update conda from 4.6.14 to 4.11.0

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This commit is contained in:
Holger Hoefling 2022-04-24 20:36:29 +02:00
parent e66cf9c6c8
commit cfe0988e48
1 changed files with 29 additions and 15 deletions
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44
pkgs/tools/package-management/conda/default.nix
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@ -8,10 +8,11 @@
, libarchive , libarchive
, libGL , libGL
, xorg , xorg
, zlib
# Conda installs its packages and environments under this directory # Conda installs its packages and environments under this directory
, installationPath ? "~/.conda" , installationPath ? "~/.conda"
# Conda manages most pkgs itself, but expects a few to be on the system. # Conda manages most pkgs itself, but expects a few to be on the system.
, condaDeps ? [ stdenv.cc xorg.libSM xorg.libICE xorg.libX11 xorg.libXau xorg.libXi xorg.libXrender libselinux libGL ] , condaDeps ? [ stdenv.cc xorg.libSM xorg.libICE xorg.libX11 xorg.libXau xorg.libXi xorg.libXrender libselinux libGL zlib]
# Any extra nixpkgs you'd like available in the FHS env for Conda to use # Any extra nixpkgs you'd like available in the FHS env for Conda to use
, extraPkgs ? [ ] , extraPkgs ? [ ]
}: }:
@ -30,24 +31,37 @@
# $ conda-shell # $ conda-shell
# $ conda install spyder # $ conda install spyder
let let
version = "4.6.14"; version = "4.11.0";
src = fetchurl { src = fetchurl {
url = "https://repo.continuum.io/miniconda/Miniconda3-${version}-Linux-x86_64.sh"; url = "https://repo.continuum.io/miniconda/Miniconda3-py39_${version}-Linux-x86_64.sh";
sha256 = "1gn43z1y5zw4yv93q1qajwbmmqs83wx5ls5x4i4llaciba4j6sqd"; sha256 = "sha256-TunDqlMynNemO0mHfAurtJsZt+WvKYB7eTp2vbHTYrQ=";
}; };
conda = (
let
libPath = lib.makeLibraryPath [
zlib # libz.so.1
];
in
runCommand "conda-install" { buildInputs = [ makeWrapper zlib]; }
# on line 10, we have 'unset LD_LIBRARY_PATH'
# we have to comment it out however in a way that the number of bytes in the
# file does not change. So we replace the 'u' in the line with a '#'
# The reason is that the binary payload is encoded as number
# of bytes from the top of the installer script
# and unsetting the library path prevents the zlib library from being discovered
''
mkdir -p $out/bin
conda = runCommand "conda-install" { buildInputs = [ makeWrapper ]; } sed 's/unset LD_LIBRARY_PATH/#nset LD_LIBRARY_PATH/' ${src} > $out/bin/miniconda-installer.sh
'' chmod +x $out/bin/miniconda-installer.sh
mkdir -p $out/bin
cp ${src} $out/bin/miniconda-installer.sh
chmod +x $out/bin/miniconda-installer.sh
makeWrapper \ makeWrapper \
$out/bin/miniconda-installer.sh \ $out/bin/miniconda-installer.sh \
$out/bin/conda-install \ $out/bin/conda-install \
--add-flags "-p ${installationPath}" \ --add-flags "-p ${installationPath}" \
--add-flags "-b" --add-flags "-b" \
''; --prefix "LD_LIBRARY_PATH" : "${libPath}"
'');
in in
buildFHSUserEnv { buildFHSUserEnv {
name = "conda-shell"; name = "conda-shell";