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Merge pull request #169382 from mweinelt/python-fixes

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Random python fixes
This commit is contained in:
Martin Weinelt 2022-04-20 14:39:28 +02:00 committed by GitHub
commit cd7dad8b9f
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GPG key ID: 4AEE18F83AFDEB23
15 changed files with 148 additions and 52 deletions
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4
pkgs/development/python-modules/dragonfly/default.nix
View file

@ -24,13 +24,13 @@
buildPythonPackage rec {
pname = "dragonfly";
version = "0.32.0";
version = "0.35.0";
src = fetchFromGitHub {
owner = "dictation-toolbox";
repo = pname;
rev = version;
sha256 = "BUbIhc8as/DVx8/4VeQS9emOLGcWFujNCxesSEEBqKQ=";
sha256 = "sha256-sqEEEr5/KG3cn4rmOGJt9zMNAjeLO6h3NJgg0EyewrM=";
};
postPatch = ''

5
pkgs/development/python-modules/flask-admin/default.nix
View file

@ -62,6 +62,11 @@ buildPythonPackage rec {
wtf-peewee
];
disabledTests = [
# Incompatible with werkzeug 2.1
"test_mockview"
];
disabledTestPaths = [
# Tests have additional requirements
"flask_admin/tests/geoa/test_basic.py"

12
pkgs/development/python-modules/flask-bcrypt/default.nix
View file

@ -8,13 +8,13 @@
buildPythonPackage rec {
pname = "flask-bcrypt";
version = "0.7.1";
version = "1.0.1";
src = fetchFromGitHub {
owner = "maxcountryman";
repo = pname;
rev = version;
sha256 = "0036gag3nj7fzib23lbbpwhlrn1s0kkrfwk5pd90y4cjcfqh8z9x";
sha256 = "sha256-WlIholi/nzq6Ikc0LS6FhG0Q5Kz0kvvAlA2YJ7EksZ4=";
};
propagatedBuildInputs = [
@ -23,9 +23,15 @@ buildPythonPackage rec {
];
checkPhase = ''
${python.interpreter} test_bcrypt.py
runHook preCheck
${python.interpreter} -m unittest discover
runHook postCheck
'';
pythonImportsCheck = [
"flask_bcrypt"
];
meta = with lib; {
description = "Brcrypt hashing for Flask";
homepage = "https://github.com/maxcountryman/flask-bcrypt";

16
pkgs/development/python-modules/flask-seasurf/default.nix
View file

@ -1,19 +1,29 @@
{ lib, fetchFromGitHub, buildPythonPackage, isPy3k, flask }:
{ lib, fetchFromGitHub, buildPythonPackage, isPy3k, flask, mock, python }:
buildPythonPackage rec {
pname = "Flask-SeaSurf";
version = "0.3.0";
version = "1.1.1";
disabled = !isPy3k;
src = fetchFromGitHub {
owner = "maxcountryman";
repo = "flask-seasurf";
rev = version;
sha256 = "02hsvppsz1d93v641f14fdnd22gbc12ilc9k9kn7wl119n5s3pd8";
sha256 = "sha256-L/ZUEqqHmsyXG5eShcITII36ttwQlZN5GBngo+GcCdw=";
};
propagatedBuildInputs = [ flask ];
checkInputs = [
mock
];
checkPhase = ''
runHook preCheck
${python.interpreter} -m unittest discover
runHook postCheck
'';
pythonImportsCheck = [ "flask_seasurf" ];
meta = with lib; {

11
pkgs/development/python-modules/geoalchemy2/default.nix
View file

@ -34,6 +34,12 @@ buildPythonPackage rec {
pytestCheckHook
];
pytestFlagsArray = [
# tests require live postgis database
"--deselect=tests/test_pickle.py::TestPickle::test_pickle_unpickle"
"--deselect=tests/gallery/test_specific_compilation.py::test_specific_compilation"
];
disabledTestPaths = [
# tests require live postgis database
"tests/gallery/test_decipher_raster.py"
@ -41,6 +47,11 @@ buildPythonPackage rec {
"tests/gallery/test_summarystatsagg.py"
"tests/gallery/test_type_decorator.py"
"tests/test_functional.py"
"tests/test_functional_postgresql.py"
];
pythonImportsCheck = [
"geoalchemy2"
];
meta = with lib; {

6
pkgs/development/python-modules/gym/default.nix
View file

@ -7,13 +7,13 @@
buildPythonPackage rec {
pname = "gym";
version = "0.22.0";
version = "0.21.0";
src = fetchFromGitHub {
owner = "openai";
repo = pname;
rev = version;
sha256 = "sha256-JbPWLuQGo+fErUlCKKpMwWdu0KvXBDuH2MeAHdJCTgM=";
rev = "v${version}";
sha256 = "12b545xz0r2g4z5r7f8amxl7nm0lqymkzwcwhg1bni9h0sxwpv6c";
};
propagatedBuildInputs = [

8
pkgs/development/python-modules/kaldi-active-grammar/default.nix
View file

@ -5,6 +5,7 @@
, cmake
, ush
, requests
, six
, numpy
, cffi
, openfst
@ -12,6 +13,11 @@
, callPackage
}:
#
# Maintainer note: only in-tree dependant is `dragonfly`, try to
# update the two alongside eachother.
#
let
kaldi = callPackage ./fork.nix { };
in
@ -48,7 +54,7 @@ buildPythonPackage rec {
buildInputs = [ openfst kaldi ];
nativeBuildInputs = [ scikit-build cmake ];
propagatedBuildInputs = [ ush requests numpy cffi ];
propagatedBuildInputs = [ ush requests numpy cffi six ];
doCheck = false; # no tests exist

69
pkgs/development/python-modules/kbcstorage/default.nix Normal file
View file

@ -0,0 +1,69 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
# build
, setuptools-scm
# propagates
, azure-storage-blob
, boto3
, requests
# tests
, responses
, python
}:
buildPythonPackage rec {
pname = "sapi-python-client";
version = "0.4.1";
format = "setuptools";
src = fetchFromGitHub {
owner = "keboola";
repo = pname;
rev = version;
sha256 = "189dzj06vzp7366h2qsfvbjmw9qgl7jbp8syhynn9yvrjqp4k8h3";
};
SETUPTOOLS_SCM_PRETEND_VERSION = version;
nativeBuildInputs = [
setuptools-scm
];
propagatedBuildInputs = [
azure-storage-blob
boto3
requests
];
# requires API token and an active keboola bucket
# ValueError: Root URL is required.
doCheck = false;
checkInputs = [
responses
];
checkPhase = ''
runHook preCheck
${python.interpreter} -m unittest discover
runHook postCheck
'';
pythonImportsCheck = [
"kbcstorage"
"kbcstorage.buckets"
"kbcstorage.client"
"kbcstorage.tables"
];
meta = with lib; {
description = "Keboola Connection Storage API client";
homepage = "https://github.com/keboola/sapi-python-client";
maintainers = with maintainers; [ mrmebelman ];
license = licenses.mit;
};
}

10
pkgs/development/python-modules/pyfaidx/default.nix
View file

@ -5,6 +5,7 @@
, numpy
, setuptools-scm
, six
, glibcLocales
, pytestCheckHook
}:
@ -27,16 +28,15 @@ buildPythonPackage rec {
];
checkInputs = [
glibcLocales
nose
numpy
pytestCheckHook
];
disabledTests = [
# PyPI releases don't ship all the needed files for the tests
"test_index_zero_length"
"test_fetch_zero_length"
"test_read_back_index"
disabledTestPaths = [
# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
"tests/test_Fasta_bgzip.py"
];
pythonImportsCheck = [

5
pkgs/development/python-modules/python-vagrant/default.nix
View file

@ -3,6 +3,7 @@
buildPythonPackage rec {
version = "1.0.0";
pname = "python-vagrant";
format = "pyproject";
src = fetchPypi {
inherit pname version;
@ -12,6 +13,10 @@ buildPythonPackage rec {
# The tests try to connect to qemu
doCheck = false;
pythonImportsCheck = [
"vagrant"
];
meta = {
description = "Python module that provides a thin wrapper around the vagrant command line executable";
homepage = "https://github.com/todddeluca/python-vagrant";

17
pkgs/development/python-modules/radio_beam/default.nix
View file

@ -3,14 +3,17 @@
, buildPythonPackage
, setuptools-scm
, astropy
, numpy
, scipy
, six
, pytestCheckHook
, pytest-doctestplus
, scipy
}:
buildPythonPackage rec {
pname = "radio_beam";
version = "0.3.3";
format = "pyproject";
src = fetchPypi {
inherit version;
@ -22,9 +25,17 @@ buildPythonPackage rec {
setuptools-scm
];
propagatedBuildInputs = [ astropy ];
propagatedBuildInputs = [
astropy
numpy
scipy
six
];
checkInputs = [ pytestCheckHook pytest-doctestplus scipy ];
checkInputs = [
pytestCheckHook
pytest-doctestplus
];
# Tests must be run in the build directory
preCheck = ''

30
pkgs/development/python-modules/sapi-python-client/default.nix
View file

@ -1,30 +0,0 @@
{ lib, git, setuptools, setuptools-scm, fetchFromGitHub, requests, boto3, buildPythonPackage, responses }:
buildPythonPackage rec {
pname = "sapi-python-client";
version = "0.4.1";
src = fetchFromGitHub {
owner = "keboola";
repo = pname;
rev = version;
sha256 = "189dzj06vzp7366h2qsfvbjmw9qgl7jbp8syhynn9yvrjqp4k8h3";
};
postPatch = ''
sed -i 's|use_scm_version=True|version="${version}"|' setup.py
'';
doCheck = false; # requires API token and an active keboola bucket
nativeBuildInputs = [ git setuptools-scm ];
propagatedBuildInputs = [ setuptools requests boto3 responses ];
meta = with lib; {
description = "Keboola Connection Storage API client";
homepage = "https://github.com/keboola/sapi-python-client";
maintainers = with maintainers; [ mrmebelman ];
license = licenses.mit;
};
}

2
pkgs/development/python-modules/sendgrid/default.nix
View file

@ -7,6 +7,7 @@
, pythonOlder
, pyyaml
, starkbank-ecdsa
, six
, werkzeug
}:
@ -27,6 +28,7 @@ buildPythonPackage rec {
propagatedBuildInputs = [
python-http-client
starkbank-ecdsa
six
];
checkInputs = [

1
pkgs/top-level/python-aliases.nix
View file

@ -121,6 +121,7 @@ mapAliases ({
ruamel_base = ruamel-base; # added 2021-11-01
ruamel_yaml = ruamel-yaml; # added 2021-11-01
ruamel_yaml_clib = ruamel-yaml-clib; # added 2021-11-01
sapi-python-client = kbcstorage; # added 2022-04-20
scikitlearn = scikit-learn; # added 2021-07-21
selectors34 = throw "selectors34 has been removed: functionality provided by Python itself; archived by upstream."; # added 2021-06-10
setuptools_scm = setuptools-scm; # added 2021-06-03

4
pkgs/top-level/python-packages.nix
View file

@ -4485,6 +4485,8 @@ in {
kazoo = callPackage ../development/python-modules/kazoo { };
kbcstorage = callPackage ../development/python-modules/kbcstorage { };
kconfiglib = callPackage ../development/python-modules/kconfiglib { };
keep = callPackage ../development/python-modules/keep { };
@ -9088,8 +9090,6 @@ in {
sanic-testing = callPackage ../development/python-modules/sanic-testing { };
sapi-python-client = callPackage ../development/python-modules/sapi-python-client { };
sarif-om = callPackage ../development/python-modules/sarif-om { };
sarge = callPackage ../development/python-modules/sarge { };