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cmdstan: build from source

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This commit is contained in:
Weijia Wang 2023-01-08 23:57:02 +01:00
parent 7ea4e36ad7
commit bcb37e4aca
1 changed files with 23 additions and 22 deletions
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45
pkgs/development/compilers/cmdstan/default.nix
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@ -1,25 +1,18 @@
{ lib, stdenv, fetchurl, python3, runtimeShell }: { lib, stdenv, fetchFromGitHub, stanc, python3, buildPackages, runtimeShell }:
let
# FIXME: remove conditional on future release
version = if stdenv.isx86_64 then "2.31.0" else "2.30.1";
# includes stanc binaries needed to build cmdstand
srcs = rec {
aarch64-linux = fetchurl {
url = "https://github.com/stan-dev/cmdstan/releases/download/v${version}/cmdstan-${version}-linux-arm64.tar.gz";
sha256 = "sha256-oj/7JHT4LZcRAHiA2KbM6pZbOe6C98Ff//cNsG9DIm8=";
};
x86_64-darwin = fetchurl {
url = "https://github.com/stan-dev/cmdstan/releases/download/v${version}/cmdstan-${version}.tar.gz";
sha256 = "sha256-BMqRRWIC/Z7It2qkESJd9L3ycyxvA6NHiWbAvzVMzIQ=";
};
x86_64-linux = x86_64-darwin;
};
src = srcs.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}");
in
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "cmdstan"; pname = "cmdstan";
inherit version src; version = "2.31.0";
src = fetchFromGitHub {
owner = "stan-dev";
repo = pname;
rev = "v${version}";
fetchSubmodules = true;
sha256 = "sha256-Uh/ZhEnbhQwC8xGFjDzH9No3VRgVbHYk2KoC+e3YhJw=";
};
nativeBuildInputs = [ stanc ];
buildFlags = [ "build" ]; buildFlags = [ "build" ];
enableParallelBuilding = true; enableParallelBuilding = true;
@ -38,6 +31,13 @@ stdenv.mkDerivation rec {
src/test/interface/stansummary_test.cpp src/test/interface/stansummary_test.cpp
''; '';
preConfigure = ''
mkdir -p bin
ln -s ${buildPackages.stanc}/bin/stanc bin/stanc
'';
makeFlags = lib.optional stdenv.isDarwin "arch=${stdenv.hostPlatform.darwinArch}";
checkPhase = '' checkPhase = ''
./runCmdStanTests.py -j$NIX_BUILD_CORES src/test/interface ./runCmdStanTests.py -j$NIX_BUILD_CORES src/test/interface
''; '';
@ -57,7 +57,7 @@ stdenv.mkDerivation rec {
# Hack to ensure that patchelf --shrink-rpath get rids of a $TMPDIR reference. # Hack to ensure that patchelf --shrink-rpath get rids of a $TMPDIR reference.
preFixup = "rm -rf stan"; preFixup = "rm -rf stan";
meta = { meta = with lib; {
description = "Command-line interface to Stan"; description = "Command-line interface to Stan";
longDescription = '' longDescription = ''
Stan is a probabilistic programming language implementing full Bayesian Stan is a probabilistic programming language implementing full Bayesian
@ -66,7 +66,8 @@ stdenv.mkDerivation rec {
likelihood estimation with Optimization (L-BFGS). likelihood estimation with Optimization (L-BFGS).
''; '';
homepage = "https://mc-stan.org/interfaces/cmdstan.html"; homepage = "https://mc-stan.org/interfaces/cmdstan.html";
license = lib.licenses.bsd3; license = licenses.bsd3;
platforms = [ "aarch64-linux" "x86_64-darwin" "x86_64-linux" ]; maintainers = with maintainers; [ wegank ];
platforms = platforms.unix;
}; };
} }