From b3aa5d6bfc58eef848a589707fd9e363b2508dfb Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Tue, 7 Oct 2008 15:12:01 +0000 Subject: [PATCH] Added meta.pkgMaintainer to biology packages - a claim to fame, or you know who to blame! svn path=/nixpkgs/trunk/; revision=12986 --- pkgs/applications/science/biology/emboss/default.nix | 1 + pkgs/applications/science/biology/mrbayes/default.nix | 1 + pkgs/applications/science/biology/ncbi-tools/default.nix | 1 + pkgs/applications/science/biology/pal2nal/default.nix | 2 +- pkgs/applications/science/biology/paml/default.nix | 1 + pkgs/applications/science/biology/slr/default.nix | 4 +++- pkgs/development/libraries/science/biology/biolib/default.nix | 1 + 7 files changed, 9 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/science/biology/emboss/default.nix b/pkgs/applications/science/biology/emboss/default.nix index 96181c8ee6cb..7859e0c760c6 100644 --- a/pkgs/applications/science/biology/emboss/default.nix +++ b/pkgs/applications/science/biology/emboss/default.nix @@ -26,5 +26,6 @@ stdenv.mkDerivation { sequence data from the web.''; license = "GPL2"; homepage = http://emboss.sourceforge.net/; + pkgMaintainer = http://biolib.open-bio.org/; }; } diff --git a/pkgs/applications/science/biology/mrbayes/default.nix b/pkgs/applications/science/biology/mrbayes/default.nix index 78295faf69a8..3ea7cf5796f5 100644 --- a/pkgs/applications/science/biology/mrbayes/default.nix +++ b/pkgs/applications/science/biology/mrbayes/default.nix @@ -16,5 +16,6 @@ stdenv.mkDerivation rec { longDescription = ''Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.''; license = "GPL2"; homepage = http://mrbayes.csit.fsu.edu/; + pkgMaintainer = http://biolib.open-bio.org; }; } diff --git a/pkgs/applications/science/biology/ncbi-tools/default.nix b/pkgs/applications/science/biology/ncbi-tools/default.nix index 45460c4b1aa9..024ae52f77bb 100644 --- a/pkgs/applications/science/biology/ncbi-tools/default.nix +++ b/pkgs/applications/science/biology/ncbi-tools/default.nix @@ -17,6 +17,7 @@ stdenv.mkDerivation rec { description = ''NCBI Bioinformatics toolbox (incl. blast)''; longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support (at this point).''; homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; + pkgMaintainer = http://BioLib.open-bio.org/; license = "GPL"; priority = "5"; # zlib.so gives a conflict with zlib }; diff --git a/pkgs/applications/science/biology/pal2nal/default.nix b/pkgs/applications/science/biology/pal2nal/default.nix index ff9e35d92164..c2a48dc7a788 100644 --- a/pkgs/applications/science/biology/pal2nal/default.nix +++ b/pkgs/applications/science/biology/pal2nal/default.nix @@ -26,6 +26,6 @@ If the input is a pair of sequences, PAL2NAL automatically calculates KS and KA ''; license = "non-commercial"; homepage = http://coot.embl.de/pal2nal/; - pkgMaintainer = "Pjotr Prins"; + pkgMaintainer = http://biolib.open-bio.org; }; } diff --git a/pkgs/applications/science/biology/paml/default.nix b/pkgs/applications/science/biology/paml/default.nix index dc1bb206aaf5..225d28704749 100644 --- a/pkgs/applications/science/biology/paml/default.nix +++ b/pkgs/applications/science/biology/paml/default.nix @@ -28,5 +28,6 @@ stdenv.mkDerivation { longDescription = ''PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained and distributed for academic use free of charge by Ziheng Yang. ANSI C source codes are distributed for UNIX/Linux/Mac OSX, and executables are provided for MS Windows. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.''; license = "non-commercial"; homepage = http://abacus.gene.ucl.ac.uk/software/paml.html; + pkgMaintainer = http://biolib.open-bio.org/; }; } diff --git a/pkgs/applications/science/biology/slr/default.nix b/pkgs/applications/science/biology/slr/default.nix index 981cf2a67031..3268fe32f53b 100644 --- a/pkgs/applications/science/biology/slr/default.nix +++ b/pkgs/applications/science/biology/slr/default.nix @@ -19,11 +19,13 @@ stdenv.mkDerivation { ''; meta = { - description = "Phylogenetic Analysis by Maximum Likelihood (PAML)"; + description = "SLR: Sitewise Likehood Ratio estimation of selection"; longDescription = '' SLR is a program to detect sites in coding DNA that are unusually conserved and/or unusually variable (that is, evolving under purify or positive selection) by analysing the pattern of changes for an alignment of sequences on an evolutionary tree. ''; license = "GPL3"; homepage = http://www.ebi.ac.uk/goldman/SLR/; + pkgMaintainer = http://biolib.open-bio.org/; + }; } diff --git a/pkgs/development/libraries/science/biology/biolib/default.nix b/pkgs/development/libraries/science/biology/biolib/default.nix index cb18a8509bf0..aa935c748fa2 100644 --- a/pkgs/development/libraries/science/biology/biolib/default.nix +++ b/pkgs/development/libraries/science/biology/biolib/default.nix @@ -17,5 +17,6 @@ written in C/C++ and makes them available for major Bio* languages: BioPerl, BioRuby, BioPython''; license = "GPL2"; homepage = http://biolib.open-bio.org/; + pkgMaintainer = http://biolib.open-bio.org/; }; }