snakemake: add missing optional dependenices
These are needed to generate reports
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@ -12,10 +12,13 @@ python3Packages.buildPythonApplication rec {
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docutils
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filelock
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GitPython
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jinja2
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jsonschema
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nbformat
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networkx
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psutil
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pulp
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pygraphviz
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pyyaml
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ratelimiter
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requests
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