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Merge pull request #188536 from bcdarwin/update-dicom2nifti

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Sandro 2022-08-30 18:04:51 +02:00 committed by GitHub
commit 8e48c164f1
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1 changed files with 17 additions and 8 deletions
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25
pkgs/development/python-modules/dicom2nifti/default.nix
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@ -1,9 +1,9 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
, isPy27
, pythonOlder
, pytestCheckHook
, gdcm
, nose
, nibabel
, numpy
, pydicom
@ -13,21 +13,30 @@
buildPythonPackage rec {
pname = "dicom2nifti";
version = "2.3.0";
disabled = isPy27;
version = "2.4.3";
disabled = pythonOlder "3.6";
# no tests in PyPI dist
src = fetchFromGitHub {
owner = "icometrix";
repo = pname;
rev = version;
sha256 = "sha256-QSu9CGXFjDpI25Cy6QSbrwiQ2bwsVezCUxSovRLs6AI=";
hash = "sha256-za2+HdnUhPu3+p29JsF4iL1lyPQVmEv3fam0Yf1oeMQ=";
};
propagatedBuildInputs = [ nibabel numpy pydicom scipy setuptools ];
propagatedBuildInputs = [ gdcm nibabel numpy pydicom scipy setuptools ];
checkInputs = [ nose gdcm ];
checkPhase = "nosetests tests";
# python-gdcm just builds the python interface provided by the "gdcm" package, so
# we should be able to replace "python-gdcm" with "gdcm" but this doesn't work
# (similar to https://github.com/NixOS/nixpkgs/issues/84774)
postPatch = ''
substituteInPlace setup.py --replace "python-gdcm" ""
substituteInPlace tests/test_generic.py --replace "from common" "from dicom2nifti.common"
'';
checkInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "dicom2nifti" ];
meta = with lib; {
homepage = "https://github.com/icometrix/dicom2nifti";