diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix index edf26f7ec230..b2afc4701a55 100644 --- a/pkgs/applications/science/misc/snakemake/default.nix +++ b/pkgs/applications/science/misc/snakemake/default.nix @@ -2,13 +2,14 @@ python3Packages.buildPythonApplication rec { pname = "snakemake"; - version = "5.28.0"; + version = "6.0.5"; propagatedBuildInputs = with python3Packages; [ appdirs ConfigArgParse datrie docutils + filelock GitPython jsonschema nbformat @@ -17,19 +18,20 @@ python3Packages.buildPythonApplication rec { pyyaml ratelimiter requests + smart_open toposort wrapt ]; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "2367ce91baf7f8fa7738d33aff9670ffdf5410bbac49aeb209f73b45a3425046"; + sha256 = "9441169034cce46086a8b45486d75175db645b932e766d28fed312ec837792d3"; }; doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json meta = with lib; { - homepage = "https://snakemake.readthedocs.io"; + homepage = "https://snakemake.github.io"; license = licenses.mit; description = "Python-based execution environment for make-like workflows"; longDescription = ''