From 8419bb2a20ba7d5b9a556a765bd686170809ab2d Mon Sep 17 00:00:00 2001 From: Markus Kowalewski Date: Wed, 20 Nov 2019 22:44:33 +0100 Subject: [PATCH] scalapack: 2.0.2 -> 2.1 --- .../science/math/scalapack/default.nix | 15 +- .../science/math/scalapack/openmpi4.patch | 143 ------------------ 2 files changed, 7 insertions(+), 151 deletions(-) delete mode 100644 pkgs/development/libraries/science/math/scalapack/openmpi4.patch diff --git a/pkgs/development/libraries/science/math/scalapack/default.nix b/pkgs/development/libraries/science/math/scalapack/default.nix index 14277c8c6318..bff0d9a85fa2 100644 --- a/pkgs/development/libraries/science/math/scalapack/default.nix +++ b/pkgs/development/libraries/science/math/scalapack/default.nix @@ -1,20 +1,19 @@ -{ stdenv, fetchurl, cmake, openssh +{ stdenv, fetchFromGitHub, cmake, openssh , gfortran, mpi, openblasCompat } : stdenv.mkDerivation rec { pname = "scalapack"; - version = "2.0.2"; + version = "2.1"; - src = fetchurl { - url = "http://www.netlib.org/scalapack/scalapack-${version}.tgz"; - sha256 = "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c"; + src = fetchFromGitHub { + owner = "Reference-ScaLAPACK"; + repo = pname; + rev = "v${version}"; + sha256 = "042q9kc383h7y0had9a37702z4s0szavss063ljvfdsbjy07gzb1"; }; - # patch to rename outdated MPI functions - patches = [ ./openmpi4.patch ]; - nativeBuildInputs = [ cmake openssh ]; buildInputs = [ mpi gfortran openblasCompat ]; diff --git a/pkgs/development/libraries/science/math/scalapack/openmpi4.patch b/pkgs/development/libraries/science/math/scalapack/openmpi4.patch deleted file mode 100644 index 5d0afb58c027..000000000000 --- a/pkgs/development/libraries/science/math/scalapack/openmpi4.patch +++ /dev/null @@ -1,143 +0,0 @@ -diff --git a/BLACS/SRC/blacs_get_.c b/BLACS/SRC/blacs_get_.c -index e979767..d4b04cf 100644 ---- a/BLACS/SRC/blacs_get_.c -+++ b/BLACS/SRC/blacs_get_.c -@@ -23,7 +23,7 @@ F_VOID_FUNC blacs_get_(int *ConTxt, int *what, int *val) - case SGET_MSGIDS: - if (BI_COMM_WORLD == NULL) Cblacs_pinfo(val, &val[1]); - iptr = &val[1]; -- ierr=MPI_Attr_get(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val); -+ ierr=MPI_Comm_get_attr(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val); - val[0] = 0; - val[1] = *iptr; - break; -diff --git a/BLACS/SRC/cgamn2d_.c b/BLACS/SRC/cgamn2d_.c -index 2db6ccb..6958f32 100644 ---- a/BLACS/SRC/cgamn2d_.c -+++ b/BLACS/SRC/cgamn2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC cgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/cgamx2d_.c b/BLACS/SRC/cgamx2d_.c -index 707c0b6..f802d01 100644 ---- a/BLACS/SRC/cgamx2d_.c -+++ b/BLACS/SRC/cgamx2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC cgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/dgamn2d_.c b/BLACS/SRC/dgamn2d_.c -index dff23b4..a2627ac 100644 ---- a/BLACS/SRC/dgamn2d_.c -+++ b/BLACS/SRC/dgamn2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC dgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/dgamx2d_.c b/BLACS/SRC/dgamx2d_.c -index a51f731..2a644d0 100644 ---- a/BLACS/SRC/dgamx2d_.c -+++ b/BLACS/SRC/dgamx2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC dgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/igamn2d_.c b/BLACS/SRC/igamn2d_.c -index 16bc003..f6a7859 100644 ---- a/BLACS/SRC/igamn2d_.c -+++ b/BLACS/SRC/igamn2d_.c -@@ -218,7 +218,7 @@ F_VOID_FUNC igamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/igamx2d_.c b/BLACS/SRC/igamx2d_.c -index 8165cbe..a7cfcc6 100644 ---- a/BLACS/SRC/igamx2d_.c -+++ b/BLACS/SRC/igamx2d_.c -@@ -218,7 +218,7 @@ F_VOID_FUNC igamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/sgamn2d_.c b/BLACS/SRC/sgamn2d_.c -index d6c95e5..569c797 100644 ---- a/BLACS/SRC/sgamn2d_.c -+++ b/BLACS/SRC/sgamn2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC sgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/sgamx2d_.c b/BLACS/SRC/sgamx2d_.c -index 4b0af6f..8897ece 100644 ---- a/BLACS/SRC/sgamx2d_.c -+++ b/BLACS/SRC/sgamx2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC sgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/zgamn2d_.c b/BLACS/SRC/zgamn2d_.c -index 9de2b23..37897df 100644 ---- a/BLACS/SRC/zgamn2d_.c -+++ b/BLACS/SRC/zgamn2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC zgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType; -diff --git a/BLACS/SRC/zgamx2d_.c b/BLACS/SRC/zgamx2d_.c -index 414c381..0e9d474 100644 ---- a/BLACS/SRC/zgamx2d_.c -+++ b/BLACS/SRC/zgamx2d_.c -@@ -221,7 +221,7 @@ F_VOID_FUNC zgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n, - { - #endif - i = 2; -- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType); -+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType); - ierr=MPI_Type_commit(&MyType); - bp->N = bp2->N = 1; - bp->dtype = bp2->dtype = MyType;