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mpi4py: Add patch to skip broken tests.

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Fixes compilation with openmpi-3.1.2
This commit is contained in:
Markus Kowalewski 2018-09-20 23:31:47 +02:00
parent be02ab2f30
commit 676825f6fe
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GPG key ID: D865C8A91D7025EB
1 changed files with 8 additions and 3 deletions
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11
pkgs/development/python-modules/mpi4py/default.nix
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@ -1,4 +1,4 @@
{ stdenv, fetchPypi, python, buildPythonPackage, mpi, openssh }:
{ stdenv, fetchPypi, fetchpatch, python, buildPythonPackage, mpi, openssh }:
buildPythonPackage rec {
pname = "mpi4py";
@ -13,6 +13,13 @@ buildPythonPackage rec {
inherit mpi;
};
patches = [ (fetchpatch {
# Disable tests failing with 3.1.x and MPI_THREAD_MULTIPLE
url = "https://bitbucket.org/mpi4py/mpi4py/commits/c2b6b7e642a182f9b00a2b8e9db363214470548a/raw";
sha256 = "0n6bz3kj4vcqb6q7d0mlj5vl6apn7i2bvfc9mpg59vh3wy47119q";
})
];
postPatch = ''
substituteInPlace test/test_spawn.py --replace \
"unittest.skipMPI('openmpi(<3.0.0)')" \
@ -37,8 +44,6 @@ buildPythonPackage rec {
# Needed to run the tests reliably. See:
# https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30
export OMPI_MCA_rmaps_base_oversubscribe=yes
export OMPI_MCA_osc=sm
export OMPI_MCA_btl=self,vader
'';
setupPyBuildFlags = ["--mpicc=${mpi}/bin/mpicc"];