From 9eeea0b9efa5c0a07146494e7426278adad44ce7 Mon Sep 17 00:00:00 2001
From: Markus Ankenbrand <markus@ankenbrand.me>
Date: Mon, 2 Jul 2018 17:00:16 +0200
Subject: [PATCH] rPackages.rhdf5: fix installation

Fix #42878
---
 pkgs/development/r-modules/default.nix         |  4 ++++
 pkgs/development/r-modules/patches/rhdf5.patch | 12 ++++++++++++
 2 files changed, 16 insertions(+)
 create mode 100644 pkgs/development/r-modules/patches/rhdf5.patch

diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index 996e3932d2a2..dc8b4d1fb156 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -749,6 +749,10 @@ let
       patches = [ ./patches/BayesXsrc.patch ];
     });
 
+    rhdf5 = old.rhdf5.overrideDerivation (attrs: {
+      patches = [ ./patches/rhdf5.patch ];
+    });
+
     rJava = old.rJava.overrideDerivation (attrs: {
       preConfigure = ''
         export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/
diff --git a/pkgs/development/r-modules/patches/rhdf5.patch b/pkgs/development/r-modules/patches/rhdf5.patch
new file mode 100644
index 000000000000..86ada84c722f
--- /dev/null
+++ b/pkgs/development/r-modules/patches/rhdf5.patch
@@ -0,0 +1,12 @@
+diff --git a/configure b/configure
+index e3e21e8..3d947b6 100755
+--- a/configure
++++ b/configure
+@@ -2859,6 +2859,7 @@ fi;
+ 
+ echo "building the bundled hdf5 library...";
+ cd ${BASEPBNAME};
++sed -i 's#/bin/mv#mv#' configure
+ ./configure  --with-pic --enable-shared=no CXX="${CXX}" CXXFLAGS="${CXXFLAGS}" CC="${CC}" CFLAGS="${CFLAGS}" F77="${F77}"
+ $MAKE lib
+ cd ../../