mathematica: Refactor install process with autoPatchelfHook (#154295)
- Call appropriate hooks at beginning/end of each phase
- No longer assume current working dir in installPhase
- Add support for udev rules installation (required for VernierLink)
- Use -verbose with MathInstaller for detailed progress
- Use patchShebangs or MathInstaller
- Remove broken hostname call, root user check, and Avahi daemon
check in MathInstaller
- Add proper error checking after MathInstaller call
- Skip configure phase
- Create wrappers for relevant executables
- Set $HOME to $TMPDIR/home temporarily so MathInstaller
succeeds
- Replace dd with tail for simplicity and performance
This commit is contained in:
Armeen Mahdian
GitHub
parent
20ae0dae7a
commit
2d207146ee
1 changed files with 113 additions and 108 deletions
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@ -1,167 +1,172 @@
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{ lib, stdenv
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, coreutils
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, patchelf
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, requireFile
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, callPackage
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{ lib
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, stdenv
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, autoPatchelfHook
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, buildEnv
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, makeWrapper
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, requireFile
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, alsa-lib
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, cups
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, dbus
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, flite
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, fontconfig
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, freetype
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, gcc
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, gcc-unwrapped
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, glib
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, libssh2
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, gmpxx
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, keyutils
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, libGL
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, libGLU
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, libpcap
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, libtins
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, libuuid
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, libxkbcommon
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, libxml2
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, llvmPackages_12
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, matio
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, mpfr
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, ncurses
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, opencv4
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, openjdk11
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, openssl
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, pciutils
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, tre
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, unixODBC
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, xkeyboard_config
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, xorg
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, zlib
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, libxml2
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, libuuid
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, lang ? "en"
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, libGL
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, libGLU
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}:
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let
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l10n =
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import ./l10ns.nix {
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lib = lib;
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inherit requireFile lang;
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};
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in
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stdenv.mkDerivation rec {
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l10n = import ./l10ns.nix {
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inherit lib requireFile lang;
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};
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in stdenv.mkDerivation {
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inherit (l10n) version name src;
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buildInputs = [
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coreutils
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patchelf
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nativeBuildInputs = [
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autoPatchelfHook
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makeWrapper
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];
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buildInputs = [
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alsa-lib
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coreutils
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cups.lib
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dbus
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flite
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fontconfig
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freetype
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gcc.cc
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gcc.libc
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glib
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libssh2
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ncurses
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opencv4
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openssl
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stdenv.cc.cc.lib
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unixODBC
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xkeyboard_config
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libxml2
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libuuid
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zlib
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gmpxx
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keyutils.lib
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libGL
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libGLU
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libpcap
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libtins
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libuuid
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libxkbcommon
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libxml2
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llvmPackages_12.libllvm.lib
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matio
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mpfr
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ncurses
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opencv4
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openjdk11
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openssl
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pciutils
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tre
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unixODBC
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xkeyboard_config
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] ++ (with xorg; [
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libX11
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libXext
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libXtst
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libXi
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libXmu
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libXrender
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libxcb
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libXcursor
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libXfixes
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libXrandr
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libICE
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libSM
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libX11
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libXScrnSaver
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libXcomposite
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libXcursor
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libXdamage
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libXext
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libXfixes
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libXi
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libXinerama
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libXmu
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libXrandr
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libXrender
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libXtst
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libxcb
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]);
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ldpath = lib.makeLibraryPath buildInputs
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+ lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux")
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(":" + lib.makeSearchPathOutput "lib" "lib64" buildInputs);
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wrapProgramFlags = [
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"--prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ gcc-unwrapped.lib zlib ]}"
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"--prefix PATH : ${lib.makeBinPath [ stdenv.cc ]}"
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# Fix libQt errors - #96490
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"--set USE_WOLFRAM_LD_LIBRARY_PATH 1"
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# Fix xkeyboard config path for Qt
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"--set QT_XKB_CONFIG_ROOT ${xkeyboard_config}/share/X11/xkb"
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];
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unpackPhase = ''
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echo "=== Extracting makeself archive ==="
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# find offset from file
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runHook preUnpack
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# Find offset from file
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offset=$(${stdenv.shell} -c "$(grep -axm1 -e 'offset=.*' $src); echo \$offset" $src)
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dd if="$src" ibs=$offset skip=1 | tar -xf -
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cd Unix
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tail -c +$(($offset + 1)) $src | tar -xf -
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runHook postUnpack
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'';
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installPhase = ''
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cd Installer
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# don't restrict PATH, that has already been done
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sed -i -e 's/^PATH=/# PATH=/' MathInstaller
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runHook preInstall
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# Fix the installation script as follows:
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# 1. Adjust the shebang
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# 2. Use the wrapper in the desktop items
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cd "$TMPDIR/Unix/Installer"
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mkdir -p "$out/lib/udev/rules.d"
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# Patch MathInstaller's shebangs and udev rules dir
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patchShebangs MathInstaller
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substituteInPlace MathInstaller \
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--replace "/bin/bash" "/bin/sh" \
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--replace "Executables/Mathematica" "../../bin/mathematica"
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--replace /etc/udev/rules.d $out/lib/udev/rules.d
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# Install the desktop items
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export XDG_DATA_HOME="$out/share"
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# Remove PATH restriction, root and avahi daemon checks, and hostname call
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sed -i '
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s/^PATH=/# &/
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s/isRoot="false"/# &/
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s/^checkAvahiDaemon$/# &/
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s/`hostname`/""/
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' MathInstaller
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echo "=== Running MathInstaller ==="
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./MathInstaller -auto -createdir=y -execdir=$out/bin -targetdir=$out/libexec/Mathematica -silent
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# NOTE: some files placed under HOME may be useful
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XDG_DATA_HOME="$out/share" HOME="$TMPDIR/home" vernierLink=y \
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./MathInstaller -execdir="$out/bin" -targetdir="$out/libexec/Mathematica" -auto -verbose -createdir=y
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# Fix library paths
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cd $out/libexec/Mathematica/Executables
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for path in mathematica MathKernel Mathematica WolframKernel wolfram math; do
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sed -i -e "2iexport LD_LIBRARY_PATH=${zlib}/lib:${stdenv.cc.cc.lib}/lib:${libssh2}/lib:\''${LD_LIBRARY_PATH}\n" $path
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done
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# Check if MathInstaller produced any errors
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errLog="$out/libexec/Mathematica/InstallErrors"
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if [ -f "$errLog" ]; then
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echo "Installation errors:"
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cat "$errLog"
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return 1
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fi
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# Fix xkeyboard config path for Qt
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for path in mathematica Mathematica; do
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sed -i -e "2iexport QT_XKB_CONFIG_ROOT=\"${xkeyboard_config}/share/X11/xkb\"\n" $path
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done
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# Remove some broken libraries
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rm -f $out/libexec/Mathematica/SystemFiles/Libraries/Linux-x86-64/libz.so*
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# Set environment variable to fix libQt errors - see https://github.com/NixOS/nixpkgs/issues/96490
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wrapProgram $out/bin/mathematica --set USE_WOLFRAM_LD_LIBRARY_PATH 1
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runHook postInstall
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'';
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preFixup = ''
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echo "=== PatchElfing away ==="
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# This code should be a bit forgiving of errors, unfortunately
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set +e
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find $out/libexec/Mathematica/SystemFiles -type f -perm -0100 | while read f; do
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type=$(readelf -h "$f" 2>/dev/null | grep 'Type:' | sed -e 's/ *Type: *\([A-Z]*\) (.*/\1/')
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if [ -z "$type" ]; then
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:
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elif [ "$type" == "EXEC" ]; then
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echo "patching $f executable <<"
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patchelf --shrink-rpath "$f"
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patchelf \
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--set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
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--set-rpath "$(patchelf --print-rpath "$f"):${ldpath}" \
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"$f" \
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&& patchelf --shrink-rpath "$f" \
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|| echo unable to patch ... ignoring 1>&2
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elif [ "$type" == "DYN" ]; then
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echo "patching $f library <<"
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patchelf \
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--set-rpath "$(patchelf --print-rpath "$f"):${ldpath}" \
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"$f" \
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&& patchelf --shrink-rpath "$f" \
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|| echo unable to patch ... ignoring 1>&2
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else
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echo "not patching $f <<: unknown elf type"
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fi
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for bin in $out/libexec/Mathematica/Executables/*; do
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wrapProgram "$bin" ''${wrapProgramFlags[@]}
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done
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'';
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dontConfigure = true;
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dontBuild = true;
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# This is primarily an IO bound build; there's little benefit to building remotely.
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# This is primarily an IO bound build; there's little benefit to building remotely
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preferLocalBuild = true;
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# all binaries are already stripped
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# All binaries are already stripped
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dontStrip = true;
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# we did this in prefixup already
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dontPatchELF = true;
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# NOTE: Some deps are still not found; ignore for now
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autoPatchelfIgnoreMissingDeps = true;
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meta = with lib; {
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description = "Wolfram Mathematica computational software system";
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