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Merge pull request #10296 from FRidh/pandas

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python packages updates
This commit is contained in:
Domen Kožar 2015-10-26 15:59:14 +01:00
commit 1703d4dc5d
1 changed files with 54 additions and 47 deletions
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101
pkgs/top-level/python-packages.nix
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@ -5936,7 +5936,7 @@ let
url = "https://bitbucket.org/edgimar/crecord/get/${builtins.substring 0 12 rev}.tar.gz";
sha256 = "02003fa5620ec40a5ad0d7cede2e65c2cb398a7fe4e1ee26bd3396a87d63ad35";
};
# crecord comes as just a bare directory
configurePhase = " ";
buildPhase = "${python.executable} -m compileall crecord";
@ -5947,7 +5947,7 @@ let
# there ain't none
doCheck = false;
meta = {
description = "Mercurial extension for selecting graphically which files/hunk/lines to commit";
homepage = https://bitbucket.org/edgimar/crecord;
@ -8098,20 +8098,20 @@ let
description = "A load testing tool";
};
};
llvmlite = buildPythonPackage rec {
name = "llvmlite-${version}";
version = "0.7.0";
disabled = isPyPy;
src = pkgs.fetchurl {
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/l/llvmlite/${name}.tar.gz";
sha256 = "6d780980da05d2d82465991bce42c1b4625018d67feae17c672c6a9d5ad0bb1a";
};
llvm = pkgs.llvm;
propagatedBuildInputs = with self; [ llvm ] ++ optional (!isPy34) enum34;
# Disable static linking
@ -8126,7 +8126,7 @@ let
checkPhase = ''
${self.python.executable} runtests.py
'';
meta = {
description = "A lightweight LLVM python binding for writing JIT compilers";
homepage = "http://llvmlite.pydata.org/";
@ -8134,7 +8134,7 @@ let
maintainers = with maintainers; [ fridh ];
};
};
lockfile = buildPythonPackage rec {
name = "lockfile-0.9.1";
@ -9313,15 +9313,16 @@ let
modules.sqlite3
];
# Test does not work on Py3k because it calls 'python'.
# https://github.com/nipy/nibabel/issues/341
# Test fails with numpy 1.10.1: ERROR: nibabel.tests.test_proxy_api.TestPARRECAPI.test_proxy_slicing
# See https://github.com/nipy/nibabel/pull/358
# and https://github.com/numpy/numpy/issues/6491
preCheck = ''
# Test does not work on Py3k because it calls 'python'.
# https://github.com/nipy/nibabel/issues/341
rm nisext/tests/test_testers.py
# Test fails with numpy 1.10.1: ERROR: nibabel.tests.test_proxy_api.TestPARRECAPI.test_proxy_slicing
# See https://github.com/nipy/nibabel/pull/358
# and https://github.com/numpy/numpy/issues/6491
rm nibabel/tests/test_proxy_api.py
# https://github.com/nipy/nibabel/issues/366
rm nisext/tests/test_doctest_markup.py
'';
meta = {
@ -9337,7 +9338,7 @@ let
# Uses python 2 print. Master seems to be Py3 compatible.
disabled = isPy3k;
src = pkgs.fetchurl {
url = "http://pypi.python.org/packages/source/n/nipype/${name}.tar.gz";
md5 = "480013709633a6d292e2ef668443e0c9";
@ -9387,6 +9388,26 @@ let
};
};
nose-exclude = buildPythonPackage rec {
name = "nose-exclude-${version}";
version = "0.4.1";
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/n/nose-exclude/${name}.tar.gz";
sha256 = "44466a9bcb56d2e568750f91504d1278c74eabb259a305b06e975b87b51635da";
};
propagatedBuildInputs = with self; [ nose ];
meta = {
license = licenses.lgpl21;
description = "Exclude specific directories from nosetests runs";
homepage = https://github.com/kgrandis/nose-exclude;
maintainers = with maintainers; [ fridh ];
};
};
nose-selecttests = buildPythonPackage rec {
version = "0.4";
name = "nose-selecttests-${version}";
@ -9568,12 +9589,12 @@ let
numba = buildPythonPackage rec {
version = "0.21.0";
name = "numba-${version}";
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/n/numba/${name}.tar.gz";
sha256 = "1806d2f6ad49ad891e9ac6fed0cc0b0489cbfcd9ba2dc81081c1c30091e77604";
};
propagatedBuildInputs = with self; [numpy llvmlite argparse] ++ optional (!isPy3k) funcsigs ++ optional (isPy27 || isPy33) singledispatch;
# Future work: add Cuda support.
#propagatedBuildInputs = with self; [numpy llvmlite argparse pkgs.cudatoolkit6];
@ -9590,7 +9611,7 @@ let
maintainers = with maintainers; [ fridh ];
};
};
numexpr = buildPythonPackage rec {
version = "2.4.3";
name = "numexpr-${version}";
@ -10038,14 +10059,15 @@ let
inherit (pkgs.stdenv.lib) optional optionalString;
inherit (pkgs.stdenv) isDarwin;
in buildPythonPackage rec {
name = "pandas-0.16.2";
name = "pandas-${version}";
version = "0.17.0";
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/p/pandas/${name}.tar.gz";
sha256 = "10agmrkps8bi5948vwpipfxds5kj1d076m9i0nhaxwqiw7gm6670";
sha256 = "320d4fdf734b82adebc8fde9d8ca4b05fe155a72b6f7aa95d76242da8748d6a4";
};
buildInputs = [ self.nose ] ++ optional isDarwin pkgs.libcxx;
buildInputs = with self; [ nose ] ++ optional isDarwin pkgs.libcxx;
propagatedBuildInputs = with self; [
dateutil
numpy
@ -10071,31 +10093,16 @@ let
"['pandas/src/klib', 'pandas/src', '$cpp_sdk']"
'';
preCheck = ''
# Broken test, probably https://github.com/pydata/pandas/issues/10312:
rm pandas/io/tests/test_html.py
# Hitting https://github.com/pydata/pandas/pull/7362 on python
# 3.3 and 3.4, not sure why:
rm pandas/tseries/tests/test_daterange.py
# Need to skip this test; insert a line here... hacky but oh well.
badtest=pandas/tseries/tests/test_timezones.py
fixed=$TMPDIR/fixed_test_timezones.py
touch $fixed
head -n 602 $badtest > $fixed
echo ' raise nose.SkipTest("Not working")' >> $fixed
tail -n +603 $badtest >> $fixed
mv $fixed $badtest
'';
# The flag `-A 'not network'` will disable tests that use internet.
# The `-e` flag disables a few problematic tests.
# https://github.com/pydata/pandas/issues/11169
# https://github.com/pydata/pandas/issues/11287
checkPhase = ''
runHook preCheck
# The flag `-A 'not network'` will disable tests that use internet.
# The `-e` flag disables a few problematic tests.
${python.executable} setup.py nosetests -A 'not network' --stop \
-e 'test_clipboard|test_series' --verbosity=3
-e 'test_data|test_excel|test_html|test_json|test_frequencies|test_frame' --verbosity=3
runHook postCheck
'';
@ -13714,7 +13721,7 @@ let
homepage = http://scikit-learn.org;
license = licenses.bsd3;
maintainers = with maintainers; [ fridh ];
};
};
};
scripttest = buildPythonPackage rec {
@ -16159,11 +16166,11 @@ let
xray = buildPythonPackage rec {
name = "xray-${version}";
version = "0.6.0";
version = "0.6.1";
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/x/xray/${name}.tar.gz";
sha256 = "c8c4aadb0d39662a81c259bd609f42708ff31c90012a9dd0a1f9ee56a798196f";
sha256 = "bfbc307203d5433b4da31c210773c8474c237ff97350874b6e436d452fb9dfc8";
};
buildInputs = with self; [nose];
@ -18290,10 +18297,10 @@ let
version = "1.10";
name = "networkx-${version}";
# Currently broken on PyPy.
# Currently broken on PyPy.
# https://github.com/networkx/networkx/pull/1361
disabled = isPyPy;
src = pkgs.fetchurl {
url = "https://pypi.python.org/packages/source/n/networkx/${name}.tar.gz";
sha256 = "ced4095ab83b7451cec1172183eff419ed32e21397ea4e1971d92a5808ed6fb8";