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Merge pull request #224345 from natsukium/blast/darwin

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blast-bin: init at 2.13.0
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Weijia Wang 2023-04-03 09:59:08 +03:00 committed by GitHub
commit 150dcd7ce7
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60
pkgs/applications/science/biology/blast/bin.nix Normal file
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@ -0,0 +1,60 @@
{ lib
, stdenv
, fetchurl
, python3
, perl
, blast
, autoPatchelfHook
, zlib
, bzip2
, glib
, libxml2
, coreutils
}:
let
pname = "blast-bin";
version = "2.13.0";
srcs = rec {
x86_64-linux = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-linux.tar.gz";
hash = "sha256-QPK3OdT++GoNI1NHyEpu2/hB2hqHYPQ/vNXFAVCwVEc=";
};
aarch64-linux = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-arm-linux.tar.gz";
hash = "sha256-vY8K66k7KunpBUjFsJTTb+ur5n1XmU0/mYxhZsi9ycs=";
};
x86_64-darwin = fetchurl {
url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-macosx.tar.gz";
hash = "sha256-Y0JlOUl9Ego6LTxTCNny3P5c1H3fApPXQm7Z6Zhq9RA=";
};
aarch64-darwin = x86_64-darwin;
};
src = srcs.${stdenv.hostPlatform.system};
in
stdenv.mkDerivation {
inherit pname version src;
nativeBuildInputs = lib.optional stdenv.isLinux [ autoPatchelfHook ];
buildInputs = [ python3 perl ] ++ lib.optionals stdenv.isLinux [ zlib bzip2 glib libxml2 ];
installPhase = ''
runHook preInstall
install -Dm755 bin/* -t $out/bin
runHook postInstall
'';
preFixup = ''
substituteInPlace $out/bin/get_species_taxids.sh \
--replace /bin/rm ${coreutils}/bin/rm
'';
meta = with lib; {
inherit (blast.meta) description homepage license;
platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ];
maintainers = with maintainers; [ natsukium ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -36909,6 +36909,8 @@ with pkgs;
inherit (darwin.apple_sdk.frameworks) ApplicationServices;
};
blast-bin = callPackage ../applications/science/biology/blast/bin.nix { };
bpp-core = callPackage ../development/libraries/science/biology/bpp-core {
stdenv = gcc10StdenvCompat;
};